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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 696 |
| AccB1I | GGYRCC | 2 cut(s) | 629, 1067 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1220 |
| AccI | GTMKAC | 1 cut(s) | 741 |
| AciI | CCGC | 4 cut(s) | 79, 319, 393, 633 |
| AclWI | GGATC | 3 cut(s) | 509, 579, 955 |
| AcsI | RAATTY | 1 cut(s) | 386 |
| AcyI | GRCGYC | 3 cut(s) | 693, 1068, 1238 |
| AfaI | GTAC | 2 cut(s) | 789, 800 |
| AfeI | AGCGCT | 1 cut(s) | 840 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 659, 1119, 1220 |
| AgsI | TTSAA | 3 cut(s) | 334, 911, 1167 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 129, 715 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 246, 278, 1139, 1171 |
| AluBI | AGCT | 5 cut(s) | 155, 161, 520, 530, 776 |
| AluI | AGCT | 5 cut(s) | 155, 161, 520, 530, 776 |
| Alw21I | GWGCWC | 1 cut(s) | 522 |
| Alw26I | GTCTC | 5 cut(s) | 250, 454, 629, 860, 956 |
| AlwI | GGATC | 3 cut(s) | 509, 579, 955 |
| Ama87I | CYCGRG | 2 cut(s) | 119, 156 |
| Aor51HI | AGCGCT | 1 cut(s) | 840 |
| AoxI | GGCC | 3 cut(s) | 1104, 1110, 1133 |
| ApeKI | GCWGC | 3 cut(s) | 179, 830, 995 |
| ApoI | RAATTY | 1 cut(s) | 386 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 363 |
| AspA2I | CCTAGG | 1 cut(s) | 653 |
| AspLEI | GCGC | 4 cut(s) | 830, 841, 1043, 1070 |
| AspS9I | GGNCC | 2 cut(s) | 1111, 1134 |
| AsuHPI | GGTGA | 2 cut(s) | 436, 716 |
| AsuII | TTCGAA | 1 cut(s) | 1145 |
| AvaI | CYCGRG | 2 cut(s) | 119, 156 |
| AvrII | CCTAGG | 1 cut(s) | 653 |
| BanI | GGYRCC | 2 cut(s) | 629, 1067 |
| BanII | GRGCYC | 2 cut(s) | 522, 715 |
| BbsI | GAAGAC | 3 cut(s) | 231, 434, 865 |
| Bbv12I | GWGCWC | 1 cut(s) | 522 |
| BbvI | GCAGC | 3 cut(s) | 191, 817, 982 |
| BccI | CCATC | 9 cut(s) | 92, 300, 454, 653, 654, 701, 705, 842, 1009 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 473, 507 |
| BciT130I | CCWGG | 2 cut(s) | 131, 717 |
| BcoDI | GTCTC | 5 cut(s) | 250, 454, 629, 860, 956 |
| BfaI | CTAG | 5 cut(s) | 126, 296, 654, 777, 933 |
| BfoI | RGCGCY | 3 cut(s) | 842, 1044, 1071 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 3 cut(s) | 180, 831, 996 |
| BlnI | CCTAGG | 1 cut(s) | 653 |
| BlsI | GCNGC | 3 cut(s) | 181, 832, 997 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 717 |
| BmeT110I | CYCGRG | 2 cut(s) | 119, 156 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 2 cut(s) | 1111, 1134 |
| BmiI | GGNNCC | 4 cut(s) | 631, 712, 1069, 1113 |
| BmrFI | CCNGG | 2 cut(s) | 131, 717 |
| BmrI | ACTGGG | 2 cut(s) | 793, 1109 |
| BmsI | GCATC | 2 cut(s) | 94, 1113 |
| BmuI | ACTGGG | 2 cut(s) | 793, 1109 |
| BpiI | GAAGAC | 3 cut(s) | 231, 434, 865 |
| Bpu14I | TTCGAA | 1 cut(s) | 1145 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| Bsa29I | ATCGAT | 1 cut(s) | 483 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1019 |
| BsaHI | GRCGYC | 3 cut(s) | 693, 1068, 1238 |
| BsaI | GGTCTC | 1 cut(s) | 250 |
| BsaJI | CCNNGG | 5 cut(s) | 588, 653, 684, 715, 1107 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 659, 1119, 1220 |
| Bse1I | ACTGG | 3 cut(s) | 49, 788, 1115 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1019 |
| BseBI | CCWGG | 2 cut(s) | 131, 717 |
| BseCI | ATCGAT | 1 cut(s) | 483 |
| BseDI | CCNNGG | 5 cut(s) | 588, 653, 684, 715, 1107 |
| BseGI | GGATG | 7 cut(s) | 115, 558, 664, 694, 857, 1020, 1128 |
| BseJI | GATNNNNATC | 1 cut(s) | 1019 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 659, 1119, 1220 |
| BseMII | CTCAG | 1 cut(s) | 369 |
| BseNI | ACTGG | 3 cut(s) | 49, 788, 1115 |
| BseXI | GCAGC | 3 cut(s) | 191, 817, 982 |
| BshFI | GGCC | 3 cut(s) | 1106, 1112, 1135 |
| BshNI | GGYRCC | 2 cut(s) | 629, 1067 |
| BshVI | ATCGAT | 1 cut(s) | 483 |
| BsiHKAI | GWGCWC | 1 cut(s) | 522 |
| BsiHKCI | CYCGRG | 2 cut(s) | 119, 156 |
| BslFI | GGGAC | 1 cut(s) | 1183 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 659, 1119, 1220 |
| BsmAI | GTCTC | 5 cut(s) | 250, 454, 629, 860, 956 |
| BsmBI | CGTCTC | 1 cut(s) | 454 |
| BsmFI | GGGAC | 1 cut(s) | 1183 |
| BsnI | GGCC | 3 cut(s) | 1106, 1112, 1135 |
| Bso31I | GGTCTC | 1 cut(s) | 250 |
| BsoBI | CYCGRG | 2 cut(s) | 119, 156 |
| Bsp119I | TTCGAA | 1 cut(s) | 1145 |
| Bsp1286I | GDGCHC | 2 cut(s) | 522, 715 |
| Bsp143I | GATC | 5 cut(s) | 402, 501, 584, 960, 980 |
| Bsp19I | CCATGG | 2 cut(s) | 684, 1107 |
| BspACI | CCGC | 4 cut(s) | 79, 319, 393, 633 |
| BspANI | GGCC | 3 cut(s) | 1106, 1112, 1135 |
| BspCNI | CTCAG | 1 cut(s) | 368 |
| BspDI | ATCGAT | 1 cut(s) | 483 |
| BspHI | TCATGA | 1 cut(s) | 514 |
| BspLI | GGNNCC | 4 cut(s) | 631, 712, 1069, 1113 |
| BspPI | GGATC | 3 cut(s) | 509, 579, 955 |
| BspT104I | TTCGAA | 1 cut(s) | 1145 |
| BspT107I | GGYRCC | 2 cut(s) | 629, 1067 |
| BspTNI | GGTCTC | 1 cut(s) | 250 |
| BsrI | ACTGG | 3 cut(s) | 49, 788, 1115 |
| BssECI | CCNNGG | 5 cut(s) | 588, 653, 684, 715, 1107 |
| BssMI | GATC | 5 cut(s) | 402, 501, 584, 960, 980 |
| BssNI | GRCGYC | 3 cut(s) | 693, 1068, 1238 |
| BssT1I | CCWWGG | 3 cut(s) | 653, 684, 1107 |
| Bst2UI | CCWGG | 2 cut(s) | 131, 717 |
| Bst4CI | ACNGT | 3 cut(s) | 145, 448, 871 |
| BstACI | GRCGYC | 3 cut(s) | 693, 1068, 1238 |
| BstBI | TTCGAA | 1 cut(s) | 1145 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 1008 |
| BstDEI | CTNAG | 4 cut(s) | 184, 355, 468, 1248 |
| BstDSI | CCRYGG | 3 cut(s) | 588, 684, 1107 |
| BstF5I | GGATG | 7 cut(s) | 115, 558, 664, 694, 857, 1020, 1128 |
| BstH2I | RGCGCY | 3 cut(s) | 842, 1044, 1071 |
| BstHHI | GCGC | 4 cut(s) | 830, 841, 1043, 1070 |
| BstKTI | GATC | 5 cut(s) | 405, 504, 587, 963, 983 |
| BstMAI | GTCTC | 5 cut(s) | 250, 454, 629, 860, 956 |
| BstMBI | GATC | 5 cut(s) | 402, 501, 584, 960, 980 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 827, 836, 1103, 1132 |
| BstNI | CCWGG | 2 cut(s) | 131, 717 |
| BstNSI | RCATGY | 2 cut(s) | 413, 1006 |
| BstSCI | CCNGG | 2 cut(s) | 129, 715 |
| BstV1I | GCAGC | 3 cut(s) | 191, 817, 982 |
| BstV2I | GAAGAC | 3 cut(s) | 231, 434, 865 |
| BstX2I | RGATCY | 1 cut(s) | 584 |
| BstYI | RGATCY | 1 cut(s) | 584 |
| Bsu15I | ATCGAT | 1 cut(s) | 483 |
| BsuRI | GGCC | 3 cut(s) | 1106, 1112, 1135 |
| BsuTUI | ATCGAT | 1 cut(s) | 483 |
| BtgI | CCRYGG | 3 cut(s) | 588, 684, 1107 |
| BtgZI | GCGATG | 1 cut(s) | 428 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 7 cut(s) | 115, 558, 664, 694, 857, 1020, 1128 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 1008 |
| CciI | TCATGA | 1 cut(s) | 514 |
| CfoI | GCGC | 4 cut(s) | 830, 841, 1043, 1070 |
| Cfr13I | GGNCC | 2 cut(s) | 1111, 1134 |
| ClaI | ATCGAT | 1 cut(s) | 483 |
| CseI | GACGC | 1 cut(s) | 1246 |
| Csp6I | GTAC | 2 cut(s) | 788, 799 |
| CviAII | CATG | 9 cut(s) | 275, 410, 515, 551, 685, 701, 1003, 1108, 1202 |
| CviQI | GTAC | 2 cut(s) | 788, 799 |
| DdeI | CTNAG | 4 cut(s) | 184, 355, 468, 1248 |
| DinI | GGCGCC | 1 cut(s) | 1069 |
| DpnI | GATC | 5 cut(s) | 404, 503, 586, 962, 982 |
| DpnII | GATC | 5 cut(s) | 402, 501, 584, 960, 980 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 520 |
| Eco130I | CCWWGG | 3 cut(s) | 653, 684, 1107 |
| Eco24I | GRGCYC | 2 cut(s) | 522, 715 |
| Eco31I | GGTCTC | 1 cut(s) | 250 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47III | AGCGCT | 1 cut(s) | 840 |
| Eco53kI | GAGCTC | 1 cut(s) | 520 |
| Eco88I | CYCGRG | 2 cut(s) | 119, 156 |
| EcoICRI | GAGCTC | 1 cut(s) | 520 |
| EcoRI | GAATTC | 1 cut(s) | 386 |
| EcoRII | CCWGG | 2 cut(s) | 129, 715 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 3 cut(s) | 653, 684, 1107 |
| EcoT38I | GRGCYC | 2 cut(s) | 522, 715 |
| EgeI | GGCGCC | 1 cut(s) | 1069 |
| EheI | GGCGCC | 1 cut(s) | 1069 |
| ErhI | CCWWGG | 3 cut(s) | 653, 684, 1107 |
| Esp3I | CGTCTC | 1 cut(s) | 454 |
| FaeI | CATG | 9 cut(s) | 278, 413, 518, 554, 688, 704, 1006, 1111, 1205 |
| FaqI | GGGAC | 1 cut(s) | 1183 |
| FatI | CATG | 9 cut(s) | 274, 409, 514, 550, 684, 700, 1002, 1107, 1201 |
| FblI | GTMKAC | 1 cut(s) | 741 |
| Fnu4HI | GCNGC | 3 cut(s) | 180, 831, 996 |
| FokI | GGATG | 7 cut(s) | 122, 545, 671, 701, 864, 1027, 1135 |
| FriOI | GRGCYC | 2 cut(s) | 522, 715 |
| Fsp4HI | GCNGC | 3 cut(s) | 180, 831, 996 |
| FspBI | CTAG | 5 cut(s) | 126, 296, 654, 777, 933 |
| GlaI | GCGC | 4 cut(s) | 829, 840, 1042, 1069 |
| GluI | GCNGC | 3 cut(s) | 180, 831, 996 |
| HaeII | RGCGCY | 3 cut(s) | 842, 1044, 1071 |
| HaeIII | GGCC | 3 cut(s) | 1106, 1112, 1135 |
| HgaI | GACGC | 1 cut(s) | 1246 |
| HhaI | GCGC | 4 cut(s) | 830, 841, 1043, 1070 |
| Hin1I | GRCGYC | 3 cut(s) | 693, 1068, 1238 |
| Hin1II | CATG | 9 cut(s) | 278, 413, 518, 554, 688, 704, 1006, 1111, 1205 |
| Hin6I | GCGC | 4 cut(s) | 828, 839, 1041, 1068 |
| HinP1I | GCGC | 4 cut(s) | 828, 839, 1041, 1068 |
| HinfI | GANTC | 8 cut(s) | 102, 115, 278, 430, 480, 611, 1186, 1207 |
| HphI | GGTGA | 2 cut(s) | 436, 716 |
| Hpy166II | GTNNAC | 2 cut(s) | 643, 742 |
| Hpy188I | TCNGA | 2 cut(s) | 328, 358 |
| Hpy8I | GTNNAC | 2 cut(s) | 643, 742 |
| HpyAV | CCTTC | 2 cut(s) | 228, 451 |
| HpyCH4III | ACNGT | 3 cut(s) | 145, 448, 871 |
| HpyCH4IV | ACGT | 4 cut(s) | 135, 270, 693, 1036 |
| HpyCH4V | TGCA | 3 cut(s) | 494, 998, 1010 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 827, 836, 1103, 1132 |
| HpyF3I | CTNAG | 4 cut(s) | 184, 355, 468, 1248 |
| HpySE526I | ACGT | 4 cut(s) | 135, 270, 693, 1036 |
| Hsp92I | GRCGYC | 3 cut(s) | 693, 1068, 1238 |
| Hsp92II | CATG | 9 cut(s) | 278, 413, 518, 554, 688, 704, 1006, 1111, 1205 |
| HspAI | GCGC | 4 cut(s) | 828, 839, 1041, 1068 |
| KasI | GGCGCC | 1 cut(s) | 1067 |
| Kzo9I | GATC | 5 cut(s) | 402, 501, 584, 960, 980 |
| LmnI | GCTCC | 3 cut(s) | 34, 527, 710 |
| Lsp1109I | GCAGC | 3 cut(s) | 191, 817, 982 |
| LweI | GCATC | 2 cut(s) | 94, 1113 |
| MaeI | CTAG | 5 cut(s) | 126, 296, 654, 777, 933 |
| MaeII | ACGT | 4 cut(s) | 135, 270, 693, 1036 |
| MaeIII | GTNAC | 5 cut(s) | 5, 779, 854, 1085, 1098 |
| MalI | GATC | 5 cut(s) | 404, 503, 586, 962, 982 |
| MboI | GATC | 5 cut(s) | 402, 501, 584, 960, 980 |
| MboII | GAAGA | 7 cut(s) | 233, 236, 266, 439, 580, 865, 1202 |
| MfeI | CAATTG | 1 cut(s) | 823 |
| MflI | RGATCY | 1 cut(s) | 584 |
| MhlI | GDGCHC | 2 cut(s) | 522, 715 |
| MluCI | AATT | 7 cut(s) | 17, 386, 577, 616, 823, 926, 1090 |
| Mly113I | GGCGCC | 1 cut(s) | 1068 |
| MlyI | GAGTC | 3 cut(s) | 272, 424, 1180 |
| MnlI | CCTC | 8 cut(s) | 181, 326, 646, 773, 952, 1025, 1125, 1251 |
| MroXI | GAANNNNTTC | 1 cut(s) | 363 |
| MseI | TTAA | 3 cut(s) | 372, 380, 969 |
| MslI | CAYNNNNRTG | 6 cut(s) | 563, 702, 705, 861, 990, 1025 |
| MspR9I | CCNGG | 2 cut(s) | 131, 717 |
| MunI | CAATTG | 1 cut(s) | 823 |
| MvaI | CCWGG | 2 cut(s) | 131, 717 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 827, 836, 1103, 1132 |
| NarI | GGCGCC | 1 cut(s) | 1068 |
| NcoI | CCATGG | 2 cut(s) | 684, 1107 |
| NdeII | GATC | 5 cut(s) | 402, 501, 584, 960, 980 |
| NlaIII | CATG | 9 cut(s) | 278, 413, 518, 554, 688, 704, 1006, 1111, 1205 |
| NlaIV | GGNNCC | 4 cut(s) | 631, 712, 1069, 1113 |
| NmeAIII | GCCGAG | 1 cut(s) | 606 |
| NmuCI | GTSAC | 3 cut(s) | 779, 854, 1085 |
| NspI | RCATGY | 2 cut(s) | 413, 1006 |
| NspV | TTCGAA | 1 cut(s) | 1145 |
| PaeR7I | CTCGAG | 2 cut(s) | 119, 156 |
| PagI | TCATGA | 1 cut(s) | 514 |
| PdmI | GAANNNNTTC | 1 cut(s) | 363 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 480, 611, 1207 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1220 |
| PkrI | GCNGC | 3 cut(s) | 181, 832, 997 |
| PleI | GAGTC | 3 cut(s) | 272, 424, 1180 |
| PluTI | GGCGCC | 1 cut(s) | 1071 |
| PpsI | GAGTC | 3 cut(s) | 272, 424, 1180 |
| Psp124BI | GAGCTC | 1 cut(s) | 522 |
| Psp6I | CCWGG | 2 cut(s) | 129, 715 |
| PspGI | CCWGG | 2 cut(s) | 129, 715 |
| PspN4I | GGNNCC | 4 cut(s) | 631, 712, 1069, 1113 |
| PspPI | GGNCC | 2 cut(s) | 1111, 1134 |
| PspXI | VCTCGAGB | 1 cut(s) | 156 |
| PsuI | RGATCY | 1 cut(s) | 584 |
| RsaI | GTAC | 2 cut(s) | 789, 800 |
| RsaNI | GTAC | 2 cut(s) | 788, 799 |
| RseI | CAYNNNNRTG | 6 cut(s) | 563, 702, 705, 861, 990, 1025 |
| SacI | GAGCTC | 1 cut(s) | 522 |
| SaqAI | TTAA | 3 cut(s) | 372, 380, 969 |
| SatI | GCNGC | 3 cut(s) | 180, 831, 996 |
| Sau3AI | GATC | 5 cut(s) | 402, 501, 584, 960, 980 |
| Sau96I | GGNCC | 2 cut(s) | 1111, 1134 |
| SchI | GAGTC | 3 cut(s) | 272, 424, 1180 |
| ScrFI | CCNGG | 2 cut(s) | 131, 717 |
| SduI | GDGCHC | 2 cut(s) | 522, 715 |
| SfaNI | GCATC | 2 cut(s) | 94, 1113 |
| SfoI | GGCGCC | 1 cut(s) | 1069 |
| Sfr274I | CTCGAG | 2 cut(s) | 119, 156 |
| SfuI | TTCGAA | 1 cut(s) | 1145 |
| SlaI | CTCGAG | 2 cut(s) | 119, 156 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 563, 702, 705, 861, 990, 1025 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 7 cut(s) | 17, 386, 577, 616, 823, 926, 1090 |
| SsiI | CCGC | 4 cut(s) | 79, 319, 393, 633 |
| SspDI | GGCGCC | 1 cut(s) | 1067 |
| SspMI | CTAG | 5 cut(s) | 126, 296, 654, 777, 933 |
| SstI | GAGCTC | 1 cut(s) | 522 |
| StyD4I | CCNGG | 2 cut(s) | 129, 715 |
| StyI | CCWWGG | 3 cut(s) | 653, 684, 1107 |
| TaaI | ACNGT | 3 cut(s) | 145, 448, 871 |
| TaiI | ACGT | 4 cut(s) | 138, 273, 696, 1039 |
| TaqI | TCGA | 8 cut(s) | 120, 157, 252, 478, 483, 581, 959, 1145 |
| TasI | AATT | 7 cut(s) | 17, 386, 577, 616, 823, 926, 1090 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 480, 611, 1207 |
| Tru1I | TTAA | 3 cut(s) | 372, 380, 969 |
| Tru9I | TTAA | 3 cut(s) | 372, 380, 969 |
| TseFI | GTSAC | 3 cut(s) | 779, 854, 1085 |
| TseI | GCWGC | 3 cut(s) | 179, 830, 995 |
| Tsp45I | GTSAC | 3 cut(s) | 779, 854, 1085 |
| TspDTI | ATGAA | 4 cut(s) | 230, 234, 503, 548 |
| TspGWI | ACGGA | 3 cut(s) | 514, 577, 1185 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1220 |
| XapI | RAATTY | 1 cut(s) | 386 |
| XceI | RCATGY | 2 cut(s) | 413, 1006 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 704 |
| XhoI | CTCGAG | 2 cut(s) | 119, 156 |
| XmaJI | CCTAGG | 1 cut(s) | 653 |
| XmiI | GTMKAC | 1 cut(s) | 741 |
| XmnI | GAANNNNTTC | 1 cut(s) | 363 |
| XspI | CTAG | 5 cut(s) | 126, 296, 654, 777, 933 |
| ZraI | GACGTC | 1 cut(s) | 694 |