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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 79, 286, 781 |
| AclWI | GGATC | 1 cut(s) | 587 |
| AcuI | CTGAAG | 1 cut(s) | 638 |
| AfaI | GTAC | 2 cut(s) | 248, 686 |
| AgsI | TTSAA | 2 cut(s) | 301, 564 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 4 cut(s) | 155, 487, 692, 737 |
| AluI | AGCT | 4 cut(s) | 155, 487, 692, 737 |
| Alw21I | GWGCWC | 1 cut(s) | 489 |
| AlwI | GGATC | 1 cut(s) | 587 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 2 cut(s) | 93, 791 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 701, 733 |
| AspS9I | GGNCC | 3 cut(s) | 38, 704, 758 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 3 cut(s) | 38, 704, 758 |
| BanII | GRGCYC | 1 cut(s) | 489 |
| BbsI | GAAGAC | 2 cut(s) | 273, 401 |
| Bbv12I | GWGCWC | 1 cut(s) | 489 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 6 cut(s) | 92, 215, 421, 422, 770, 818 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BclI | TGATCA | 1 cut(s) | 468 |
| BfaI | CTAG | 1 cut(s) | 641 |
| BfmI | CTRYAG | 1 cut(s) | 459 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 2 cut(s) | 180, 781 |
| BlsI | GCNGC | 2 cut(s) | 181, 782 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 3 cut(s) | 38, 704, 758 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 3 cut(s) | 38, 704, 758 |
| BmiI | GGNNCC | 3 cut(s) | 39, 281, 760 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 2 cut(s) | 273, 401 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 1 cut(s) | 536 |
| BpuEI | CTTGAG | 2 cut(s) | 141, 682 |
| BsaJI | CCNNGG | 1 cut(s) | 90 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 1 cut(s) | 90 |
| BseGI | GGATG | 5 cut(s) | 85, 238, 525, 628, 810 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseRI | GAGGAG | 1 cut(s) | 272 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 2 cut(s) | 95, 793 |
| BsiHKAI | GWGCWC | 1 cut(s) | 489 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslFI | GGGAC | 1 cut(s) | 51 |
| BsmFI | GGGAC | 1 cut(s) | 51 |
| BsnI | GGCC | 2 cut(s) | 95, 793 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 489 |
| Bsp143I | GATC | 5 cut(s) | 369, 468, 552, 576, 592 |
| BspACI | CCGC | 3 cut(s) | 79, 286, 781 |
| BspANI | GGCC | 2 cut(s) | 95, 793 |
| BspHI | TCATGA | 2 cut(s) | 70, 481 |
| BspLI | GGNNCC | 3 cut(s) | 39, 281, 760 |
| BspMAI | CTGCAG | 1 cut(s) | 463 |
| BspPI | GGATC | 1 cut(s) | 587 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssECI | CCNNGG | 1 cut(s) | 90 |
| BssMI | GATC | 5 cut(s) | 369, 468, 552, 576, 592 |
| BssT1I | CCWWGG | 1 cut(s) | 90 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 615 |
| BstC8I | GCNNGC | 5 cut(s) | 83, 153, 223, 791, 795 |
| BstDEI | CTNAG | 6 cut(s) | 184, 435, 536, 584, 688, 738 |
| BstF5I | GGATG | 5 cut(s) | 85, 238, 525, 628, 810 |
| BstKTI | GATC | 5 cut(s) | 372, 471, 555, 579, 595 |
| BstMBI | GATC | 5 cut(s) | 369, 468, 552, 576, 592 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 786 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 1 cut(s) | 459 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 401 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 2 cut(s) | 95, 793 |
| BtgZI | GCGATG | 1 cut(s) | 395 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 5 cut(s) | 85, 238, 525, 628, 810 |
| BtsI | GCAGTG | 1 cut(s) | 729 |
| BtsIMutI | CAGTG | 1 cut(s) | 729 |
| Cac8I | GCNNGC | 5 cut(s) | 83, 153, 223, 791, 795 |
| CciI | TCATGA | 2 cut(s) | 70, 481 |
| Cfr13I | GGNCC | 3 cut(s) | 38, 704, 758 |
| Csp6I | GTAC | 2 cut(s) | 247, 685 |
| CviAII | CATG | 4 cut(s) | 71, 482, 518, 574 |
| CviQI | GTAC | 2 cut(s) | 247, 685 |
| DdeI | CTNAG | 6 cut(s) | 184, 435, 536, 584, 688, 738 |
| DpnI | GATC | 5 cut(s) | 371, 470, 554, 578, 594 |
| DpnII | GATC | 5 cut(s) | 369, 468, 552, 576, 592 |
| Eam1104I | CTCTTC | 1 cut(s) | 615 |
| EarI | CTCTTC | 1 cut(s) | 615 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 487 |
| Eco130I | CCWWGG | 1 cut(s) | 90 |
| Eco24I | GRGCYC | 1 cut(s) | 489 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 3 cut(s) | 38, 704, 758 |
| Eco53kI | GAGCTC | 1 cut(s) | 487 |
| Eco57I | CTGAAG | 1 cut(s) | 638 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 487 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 1 cut(s) | 90 |
| EcoT38I | GRGCYC | 1 cut(s) | 489 |
| ErhI | CCWWGG | 1 cut(s) | 90 |
| FaeI | CATG | 4 cut(s) | 74, 485, 521, 577 |
| FaqI | GGGAC | 1 cut(s) | 51 |
| FatI | CATG | 4 cut(s) | 70, 481, 517, 573 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FbaI | TGATCA | 1 cut(s) | 468 |
| Fnu4HI | GCNGC | 2 cut(s) | 180, 781 |
| FokI | GGATG | 5 cut(s) | 72, 245, 512, 635, 797 |
| FriOI | GRGCYC | 1 cut(s) | 489 |
| Fsp4HI | GCNGC | 2 cut(s) | 180, 781 |
| FspBI | CTAG | 1 cut(s) | 641 |
| GluI | GCNGC | 2 cut(s) | 180, 781 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 2 cut(s) | 95, 793 |
| Hin1II | CATG | 4 cut(s) | 74, 485, 521, 577 |
| HinfI | GANTC | 7 cut(s) | 47, 102, 115, 236, 397, 605, 753 |
| Hpy166II | GTNNAC | 1 cut(s) | 727 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 325, 618, 758 |
| Hpy188III | TCNNGA | 7 cut(s) | 71, 119, 158, 311, 482, 590, 596 |
| Hpy8I | GTNNAC | 1 cut(s) | 727 |
| HpyAV | CCTTC | 5 cut(s) | 270, 418, 570, 613, 831 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 4 cut(s) | 422, 461, 699, 722 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 786 |
| HpyF3I | CTNAG | 6 cut(s) | 184, 435, 536, 584, 688, 738 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92II | CATG | 4 cut(s) | 74, 485, 521, 577 |
| Ksp22I | TGATCA | 1 cut(s) | 468 |
| Kzo9I | GATC | 5 cut(s) | 369, 468, 552, 576, 592 |
| LmnI | GCTCC | 4 cut(s) | 34, 148, 246, 285 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 641 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 2 cut(s) | 5, 454 |
| MalI | GATC | 5 cut(s) | 371, 470, 554, 578, 594 |
| MboI | GATC | 5 cut(s) | 369, 468, 552, 576, 592 |
| MboII | GAAGA | 5 cut(s) | 275, 278, 406, 602, 644 |
| MhlI | GDGCHC | 1 cut(s) | 489 |
| MluCI | AATT | 3 cut(s) | 17, 353, 447 |
| MlyI | GAGTC | 2 cut(s) | 41, 391 |
| MnlI | CCTC | 4 cut(s) | 181, 293, 488, 637 |
| MseI | TTAA | 3 cut(s) | 215, 339, 347 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 530, 572 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 786 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 5 cut(s) | 369, 468, 552, 576, 592 |
| NlaIII | CATG | 4 cut(s) | 74, 485, 521, 577 |
| NlaIV | GGNNCC | 3 cut(s) | 39, 281, 760 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 2 cut(s) | 70, 481 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 236, 605, 753 |
| PfoI | TCCNGGA | 1 cut(s) | 129 |
| PkrI | GCNGC | 2 cut(s) | 181, 782 |
| PleI | GAGTC | 2 cut(s) | 41, 391 |
| PpsI | GAGTC | 2 cut(s) | 41, 391 |
| Psp124BI | GAGCTC | 1 cut(s) | 489 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 3 cut(s) | 39, 281, 760 |
| PspPI | GGNCC | 3 cut(s) | 38, 704, 758 |
| PstI | CTGCAG | 1 cut(s) | 463 |
| RsaI | GTAC | 2 cut(s) | 248, 686 |
| RsaNI | GTAC | 2 cut(s) | 247, 685 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 530, 572 |
| SacI | GAGCTC | 1 cut(s) | 489 |
| SaqAI | TTAA | 3 cut(s) | 215, 339, 347 |
| SatI | GCNGC | 2 cut(s) | 180, 781 |
| Sau3AI | GATC | 5 cut(s) | 369, 468, 552, 576, 592 |
| Sau96I | GGNCC | 3 cut(s) | 38, 704, 758 |
| SchI | GAGTC | 2 cut(s) | 41, 391 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 489 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 1 cut(s) | 459 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 3 cut(s) | 38, 704, 758 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 530, 572 |
| SmlI | CTYRAG | 3 cut(s) | 119, 156, 661 |
| SmoI | CTYRAG | 3 cut(s) | 119, 156, 661 |
| Sse9I | AATT | 3 cut(s) | 17, 353, 447 |
| SsiI | CCGC | 3 cut(s) | 79, 286, 781 |
| SspMI | CTAG | 1 cut(s) | 641 |
| SstI | GAGCTC | 1 cut(s) | 489 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| StyI | CCWWGG | 1 cut(s) | 90 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 2 cut(s) | 120, 445 |
| TasI | AATT | 3 cut(s) | 17, 353, 447 |
| TatI | WGTACW | 1 cut(s) | 684 |
| TauI | GCSGC | 1 cut(s) | 783 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 236, 605, 753 |
| Tru1I | TTAA | 3 cut(s) | 215, 339, 347 |
| Tru9I | TTAA | 3 cut(s) | 215, 339, 347 |
| TscAI | CASTG | 1 cut(s) | 729 |
| TseI | GCWGC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 6 cut(s) | 59, 272, 276, 325, 470, 515 |
| TspRI | CASTG | 1 cut(s) | 729 |
| VpaK11BI | GGWCC | 3 cut(s) | 38, 704, 758 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 214 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 1 cut(s) | 641 |