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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 543 |
| AccB1I | GGYRCC | 1 cut(s) | 701 |
| AciI | CCGC | 3 cut(s) | 175, 249, 606 |
| AclWI | GGATC | 1 cut(s) | 365 |
| AcsI | RAATTY | 1 cut(s) | 242 |
| AcuI | CTGAAG | 1 cut(s) | 145 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 494, 495, 646 |
| AgsI | TTSAA | 2 cut(s) | 190, 737 |
| AjnI | CCWGG | 1 cut(s) | 706 |
| AluBI | AGCT | 5 cut(s) | 44, 50, 376, 386, 643 |
| AluI | AGCT | 5 cut(s) | 44, 50, 376, 386, 643 |
| Alw26I | GTCTC | 1 cut(s) | 310 |
| AlwI | GGATC | 1 cut(s) | 365 |
| Ama87I | CYCGRG | 1 cut(s) | 8 |
| AoxI | GGCC | 1 cut(s) | 758 |
| ApeKI | GCWGC | 3 cut(s) | 68, 608, 611 |
| ApoI | RAATTY | 1 cut(s) | 242 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 219 |
| AspS9I | GGNCC | 1 cut(s) | 759 |
| AsuHPI | GGTGA | 4 cut(s) | 616, 707, 715, 722 |
| AsuNHI | GCTAGC | 1 cut(s) | 650 |
| AvaI | CYCGRG | 1 cut(s) | 8 |
| BaeGI | GKGCMC | 1 cut(s) | 706 |
| BanI | GGYRCC | 1 cut(s) | 701 |
| BbsI | GAAGAC | 3 cut(s) | 162, 172, 290 |
| BbvI | GCAGC | 3 cut(s) | 80, 595, 598 |
| BccI | CCATC | 4 cut(s) | 104, 310, 692, 696 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 329, 363, 610, 644 |
| BciT130I | CCWGG | 1 cut(s) | 708 |
| BciVI | GTATCC | 1 cut(s) | 520 |
| BcoDI | GTCTC | 1 cut(s) | 310 |
| BfaI | CTAG | 2 cut(s) | 15, 651 |
| BfuI | GTATCC | 1 cut(s) | 520 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 77 |
| BisI | GCNGC | 4 cut(s) | 69, 606, 609, 612 |
| BlsI | GCNGC | 4 cut(s) | 70, 607, 610, 613 |
| Bme1390I | CCNGG | 1 cut(s) | 708 |
| BmeT110I | CYCGRG | 1 cut(s) | 8 |
| BmgT120I | GGNCC | 1 cut(s) | 759 |
| BmiI | GGNNCC | 1 cut(s) | 703 |
| BmrFI | CCNGG | 1 cut(s) | 708 |
| BmsI | GCATC | 3 cut(s) | 256, 630, 703 |
| BmtI | GCTAGC | 1 cut(s) | 654 |
| BpiI | GAAGAC | 3 cut(s) | 162, 172, 290 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| Bpu10I | CCTNAGC | 2 cut(s) | 644, 755 |
| BpuEI | CTTGAG | 1 cut(s) | 30 |
| Bsa29I | ATCGAT | 1 cut(s) | 339 |
| BsaAI | YACGTR | 1 cut(s) | 445 |
| BsaJI | CCNNGG | 1 cut(s) | 706 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 494, 495, 646 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| BseBI | CCWGG | 1 cut(s) | 708 |
| BseCI | ATCGAT | 1 cut(s) | 339 |
| BseDI | CCNNGG | 1 cut(s) | 706 |
| BseGI | GGATG | 6 cut(s) | 28, 99, 127, 414, 684, 685 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 494, 495, 646 |
| BseMII | CTCAG | 1 cut(s) | 769 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| BseRI | GAGGAG | 1 cut(s) | 161 |
| BseSI | GKGCMC | 1 cut(s) | 706 |
| BseXI | GCAGC | 3 cut(s) | 80, 595, 598 |
| BshFI | GGCC | 1 cut(s) | 760 |
| BshNI | GGYRCC | 1 cut(s) | 701 |
| BshVI | ATCGAT | 1 cut(s) | 339 |
| BsiHKCI | CYCGRG | 1 cut(s) | 8 |
| BslFI | GGGAC | 1 cut(s) | 644 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 494, 495, 646 |
| BsmAI | GTCTC | 1 cut(s) | 310 |
| BsmBI | CGTCTC | 1 cut(s) | 310 |
| BsmFI | GGGAC | 1 cut(s) | 644 |
| BsnI | GGCC | 1 cut(s) | 760 |
| BsoBI | CYCGRG | 1 cut(s) | 8 |
| Bsp1286I | GDGCHC | 1 cut(s) | 706 |
| Bsp143I | GATC | 2 cut(s) | 258, 357 |
| BspACI | CCGC | 3 cut(s) | 175, 249, 606 |
| BspANI | GGCC | 1 cut(s) | 760 |
| BspCNI | CTCAG | 1 cut(s) | 768 |
| BspDI | ATCGAT | 1 cut(s) | 339 |
| BspLI | GGNNCC | 1 cut(s) | 703 |
| BspOI | GCTAGC | 1 cut(s) | 654 |
| BspPI | GGATC | 1 cut(s) | 365 |
| BspT107I | GGYRCC | 1 cut(s) | 701 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssECI | CCNNGG | 1 cut(s) | 706 |
| BssMI | GATC | 2 cut(s) | 258, 357 |
| Bst2UI | CCWGG | 1 cut(s) | 708 |
| Bst4CI | ACNGT | 2 cut(s) | 34, 628 |
| BstBAI | YACGTR | 1 cut(s) | 445 |
| BstC8I | GCNNGC | 2 cut(s) | 42, 652 |
| BstDEI | CTNAG | 5 cut(s) | 521, 593, 644, 755, 822 |
| BstF5I | GGATG | 6 cut(s) | 28, 99, 127, 414, 684, 685 |
| BstKTI | GATC | 2 cut(s) | 261, 360 |
| BstMAI | GTCTC | 1 cut(s) | 310 |
| BstMBI | GATC | 2 cut(s) | 258, 357 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 56, 65, 77, 86, 505, 564, 611, 790 |
| BstNI | CCWGG | 1 cut(s) | 708 |
| BstSCI | CCNGG | 1 cut(s) | 706 |
| BstSLI | GKGCMC | 1 cut(s) | 706 |
| BstV1I | GCAGC | 3 cut(s) | 80, 595, 598 |
| BstV2I | GAAGAC | 3 cut(s) | 162, 172, 290 |
| Bsu15I | ATCGAT | 1 cut(s) | 339 |
| BsuI | GTATCC | 1 cut(s) | 520 |
| BsuRI | GGCC | 1 cut(s) | 760 |
| BsuTUI | ATCGAT | 1 cut(s) | 339 |
| BtsCI | GGATG | 6 cut(s) | 28, 99, 127, 414, 684, 685 |
| Cac8I | GCNNGC | 2 cut(s) | 42, 652 |
| Cfr13I | GGNCC | 1 cut(s) | 759 |
| ClaI | ATCGAT | 1 cut(s) | 339 |
| CseI | GACGC | 1 cut(s) | 760 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 4 cut(s) | 407, 568, 668, 692 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 5 cut(s) | 521, 593, 644, 755, 822 |
| DpnI | GATC | 2 cut(s) | 260, 359 |
| DpnII | GATC | 2 cut(s) | 258, 357 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 543 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 543 |
| Eco57I | CTGAAG | 1 cut(s) | 145 |
| Eco88I | CYCGRG | 1 cut(s) | 8 |
| EcoRII | CCWGG | 1 cut(s) | 706 |
| Esp3I | CGTCTC | 1 cut(s) | 310 |
| FaeI | CATG | 4 cut(s) | 410, 571, 671, 695 |
| FaqI | GGGAC | 1 cut(s) | 644 |
| FatI | CATG | 4 cut(s) | 406, 567, 667, 691 |
| FauNDI | CATATG | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 4 cut(s) | 69, 606, 609, 612 |
| FokI | GGATG | 6 cut(s) | 35, 86, 134, 401, 671, 692 |
| Fsp4HI | GCNGC | 4 cut(s) | 69, 606, 609, 612 |
| FspBI | CTAG | 2 cut(s) | 15, 651 |
| GluI | GCNGC | 4 cut(s) | 69, 606, 609, 612 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HaeIII | GGCC | 1 cut(s) | 760 |
| HgaI | GACGC | 1 cut(s) | 760 |
| Hin1II | CATG | 4 cut(s) | 410, 571, 671, 695 |
| HindIII | AAGCTT | 1 cut(s) | 48 |
| HinfI | GANTC | 8 cut(s) | 4, 125, 168, 286, 336, 467, 571, 583 |
| HphI | GGTGA | 4 cut(s) | 616, 707, 715, 722 |
| Hpy166II | GTNNAC | 1 cut(s) | 634 |
| Hpy188I | TCNGA | 2 cut(s) | 164, 750 |
| Hpy188III | TCNNGA | 4 cut(s) | 8, 200, 438, 464 |
| Hpy8I | GTNNAC | 1 cut(s) | 634 |
| Hpy99I | CGWCG | 1 cut(s) | 632 |
| HpyCH4III | ACNGT | 2 cut(s) | 34, 628 |
| HpyCH4IV | ACGT | 2 cut(s) | 444, 538 |
| HpyCH4V | TGCA | 2 cut(s) | 350, 567 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 56, 65, 77, 86, 505, 564, 611, 790 |
| HpyF3I | CTNAG | 5 cut(s) | 521, 593, 644, 755, 822 |
| HpySE526I | ACGT | 2 cut(s) | 444, 538 |
| Hsp92II | CATG | 4 cut(s) | 410, 571, 671, 695 |
| Kzo9I | GATC | 2 cut(s) | 258, 357 |
| LmnI | GCTCC | 2 cut(s) | 135, 383 |
| LpnPI | CCDG | 9 cut(s) | 146, 336, 449, 528, 603, 653, 693, 720, 742 |
| Lsp1109I | GCAGC | 3 cut(s) | 80, 595, 598 |
| LweI | GCATC | 3 cut(s) | 256, 630, 703 |
| MaeI | CTAG | 2 cut(s) | 15, 651 |
| MaeII | ACGT | 2 cut(s) | 444, 538 |
| MaeIII | GTNAC | 1 cut(s) | 598 |
| MalI | GATC | 2 cut(s) | 260, 359 |
| MboI | GATC | 2 cut(s) | 258, 357 |
| MboII | GAAGA | 4 cut(s) | 167, 177, 295, 436 |
| MhlI | GDGCHC | 1 cut(s) | 706 |
| MluCI | AATT | 5 cut(s) | 184, 195, 242, 433, 472 |
| MlyI | GAGTC | 2 cut(s) | 162, 280 |
| MnlI | CCTC | 5 cut(s) | 182, 488, 625, 783, 804 |
| MroXI | GAANNNNTTC | 1 cut(s) | 219 |
| MseI | TTAA | 3 cut(s) | 74, 228, 236 |
| MslI | CAYNNNNRTG | 5 cut(s) | 104, 120, 419, 693, 696 |
| MspA1I | CMGCKG | 1 cut(s) | 608 |
| MspR9I | CCNGG | 1 cut(s) | 708 |
| MvaI | CCWGG | 1 cut(s) | 708 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 56, 65, 77, 86, 505, 564, 611, 790 |
| NdeI | CATATG | 1 cut(s) | 117 |
| NdeII | GATC | 2 cut(s) | 258, 357 |
| NheI | GCTAGC | 1 cut(s) | 650 |
| NlaIII | CATG | 4 cut(s) | 410, 571, 671, 695 |
| NlaIV | GGNNCC | 1 cut(s) | 703 |
| NmuCI | GTSAC | 1 cut(s) | 598 |
| PaeR7I | CTCGAG | 1 cut(s) | 8 |
| PdmI | GAANNNNTTC | 1 cut(s) | 219 |
| PfeI | GAWTC | 6 cut(s) | 4, 125, 336, 467, 571, 583 |
| PkrI | GCNGC | 4 cut(s) | 70, 607, 610, 613 |
| PleI | GAGTC | 2 cut(s) | 162, 280 |
| PpsI | GAGTC | 2 cut(s) | 162, 280 |
| Ppu21I | YACGTR | 1 cut(s) | 445 |
| Psp6I | CCWGG | 1 cut(s) | 706 |
| PspGI | CCWGG | 1 cut(s) | 706 |
| PspN4I | GGNNCC | 1 cut(s) | 703 |
| PspPI | GGNCC | 1 cut(s) | 759 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 5 cut(s) | 104, 120, 419, 693, 696 |
| SaqAI | TTAA | 3 cut(s) | 74, 228, 236 |
| SatI | GCNGC | 4 cut(s) | 69, 606, 609, 612 |
| Sau3AI | GATC | 2 cut(s) | 258, 357 |
| Sau96I | GGNCC | 1 cut(s) | 759 |
| SchI | GAGTC | 2 cut(s) | 162, 280 |
| ScrFI | CCNGG | 1 cut(s) | 708 |
| SduI | GDGCHC | 1 cut(s) | 706 |
| SfaNI | GCATC | 3 cut(s) | 256, 630, 703 |
| Sfr274I | CTCGAG | 1 cut(s) | 8 |
| SlaI | CTCGAG | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 104, 120, 419, 693, 696 |
| SmlI | CTYRAG | 2 cut(s) | 8, 45 |
| SmoI | CTYRAG | 2 cut(s) | 8, 45 |
| Sse9I | AATT | 5 cut(s) | 184, 195, 242, 433, 472 |
| SsiI | CCGC | 3 cut(s) | 175, 249, 606 |
| SspMI | CTAG | 2 cut(s) | 15, 651 |
| StyD4I | CCNGG | 1 cut(s) | 706 |
| TaaI | ACNGT | 2 cut(s) | 34, 628 |
| TaiI | ACGT | 2 cut(s) | 447, 541 |
| TaqI | TCGA | 4 cut(s) | 9, 334, 339, 437 |
| TasI | AATT | 5 cut(s) | 184, 195, 242, 433, 472 |
| TauI | GCSGC | 1 cut(s) | 608 |
| TfiI | GAWTC | 6 cut(s) | 4, 125, 336, 467, 571, 583 |
| Tru1I | TTAA | 3 cut(s) | 74, 228, 236 |
| Tru9I | TTAA | 3 cut(s) | 74, 228, 236 |
| TseFI | GTSAC | 1 cut(s) | 598 |
| TseI | GCWGC | 3 cut(s) | 68, 608, 611 |
| Tsp45I | GTSAC | 1 cut(s) | 598 |
| TspDTI | ATGAA | 5 cut(s) | 161, 228, 254, 359, 584 |
| TspGWI | ACGGA | 1 cut(s) | 370 |
| XapI | RAATTY | 1 cut(s) | 242 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 695 |
| XhoI | CTCGAG | 1 cut(s) | 8 |
| XmnI | GAANNNNTTC | 1 cut(s) | 219 |
| XspI | CTAG | 2 cut(s) | 15, 651 |