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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 134 |
| AccIII | TCCGGA | 1 cut(s) | 544 |
| AciI | CCGC | 1 cut(s) | 256 |
| AclWI | GGATC | 1 cut(s) | 4 |
| AcsI | RAATTY | 1 cut(s) | 323 |
| AcuI | CTGAAG | 1 cut(s) | 315 |
| AfaI | GTAC | 3 cut(s) | 7, 149, 279 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 157 |
| AgsI | TTSAA | 1 cut(s) | 271 |
| AjiI | CACGTC | 1 cut(s) | 31 |
| AluBI | AGCT | 5 cut(s) | 50, 74, 95, 457, 479 |
| AluI | AGCT | 5 cut(s) | 50, 74, 95, 457, 479 |
| Alw26I | GTCTC | 1 cut(s) | 391 |
| AlwI | GGATC | 1 cut(s) | 4 |
| Ama87I | CYCGRG | 1 cut(s) | 188 |
| Aor13HI | TCCGGA | 1 cut(s) | 544 |
| ApeKI | GCWGC | 2 cut(s) | 50, 53 |
| ApoI | RAATTY | 1 cut(s) | 323 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 533, 565 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 300 |
| AspLEI | GCGC | 1 cut(s) | 136 |
| AvaI | CYCGRG | 1 cut(s) | 188 |
| BbsI | GAAGAC | 2 cut(s) | 168, 371 |
| BbvI | GCAGC | 2 cut(s) | 37, 40 |
| BccI | CCATC | 3 cut(s) | 110, 237, 313 |
| BcoDI | GTCTC | 1 cut(s) | 391 |
| BfaI | CTAG | 2 cut(s) | 432, 519 |
| BisI | GCNGC | 2 cut(s) | 51, 54 |
| BlsI | GCNGC | 2 cut(s) | 52, 55 |
| BmeT110I | CYCGRG | 1 cut(s) | 188 |
| BmgBI | CACGTC | 1 cut(s) | 31 |
| BmiI | GGNNCC | 1 cut(s) | 532 |
| BmsI | GCATC | 1 cut(s) | 447 |
| BpiI | GAAGAC | 2 cut(s) | 168, 371 |
| BsaBI | GATNNNNATC | 1 cut(s) | 356 |
| BsaJI | CCNNGG | 2 cut(s) | 525, 570 |
| BsaWI | WCCGGW | 1 cut(s) | 544 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 157 |
| Bse3DI | GCAATG | 1 cut(s) | 589 |
| Bse8I | GATNNNNATC | 1 cut(s) | 356 |
| BseAI | TCCGGA | 1 cut(s) | 544 |
| BseDI | CCNNGG | 2 cut(s) | 525, 570 |
| BseJI | GATNNNNATC | 1 cut(s) | 356 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BseMI | GCAATG | 1 cut(s) | 589 |
| BseRI | GAGGAG | 1 cut(s) | 30 |
| BseXI | GCAGC | 2 cut(s) | 37, 40 |
| Bsh1236I | CGCG | 1 cut(s) | 134 |
| BsiHKCI | CYCGRG | 1 cut(s) | 188 |
| BsiSI | CCGG | 1 cut(s) | 545 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BsmAI | GTCTC | 1 cut(s) | 391 |
| BsmBI | CGTCTC | 1 cut(s) | 391 |
| BsoBI | CYCGRG | 1 cut(s) | 188 |
| Bsp13I | TCCGGA | 1 cut(s) | 544 |
| Bsp143I | GATC | 2 cut(s) | 9, 357 |
| BspACI | CCGC | 1 cut(s) | 256 |
| BspEI | TCCGGA | 1 cut(s) | 544 |
| BspFNI | CGCG | 1 cut(s) | 134 |
| BspHI | TCATGA | 1 cut(s) | 451 |
| BspLI | GGNNCC | 1 cut(s) | 532 |
| BspPI | GGATC | 1 cut(s) | 4 |
| BsrDI | GCAATG | 1 cut(s) | 589 |
| BssECI | CCNNGG | 2 cut(s) | 525, 570 |
| BssMI | GATC | 2 cut(s) | 9, 357 |
| BssT1I | CCWWGG | 1 cut(s) | 570 |
| BstDEI | CTNAG | 4 cut(s) | 2, 75, 232, 475 |
| BstDSI | CCRYGG | 1 cut(s) | 525 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 155 |
| BstFNI | CGCG | 1 cut(s) | 134 |
| BstHHI | GCGC | 1 cut(s) | 136 |
| BstKTI | GATC | 2 cut(s) | 12, 360 |
| BstMAI | GTCTC | 1 cut(s) | 391 |
| BstMBI | GATC | 2 cut(s) | 9, 357 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 62, 71, 92 |
| BstUI | CGCG | 1 cut(s) | 134 |
| BstV1I | GCAGC | 2 cut(s) | 37, 40 |
| BstV2I | GAAGAC | 2 cut(s) | 168, 371 |
| BtgI | CCRYGG | 1 cut(s) | 525 |
| BtrI | CACGTC | 1 cut(s) | 31 |
| BtsI | GCAGTG | 1 cut(s) | 200 |
| BtsIMutI | CAGTG | 2 cut(s) | 200, 342 |
| CciI | TCATGA | 1 cut(s) | 451 |
| CfoI | GCGC | 1 cut(s) | 136 |
| CseI | GACGC | 2 cut(s) | 140, 444 |
| Csp6I | GTAC | 3 cut(s) | 6, 148, 278 |
| CviAII | CATG | 3 cut(s) | 124, 452, 469 |
| CviJI | RGCY | 9 cut(s) | 19, 50, 74, 95, 101, 252, 404, 457, 479 |
| CviKI_1 | RGCY | 9 cut(s) | 19, 50, 74, 95, 101, 252, 404, 457, 479 |
| CviQI | GTAC | 3 cut(s) | 6, 148, 278 |
| DdeI | CTNAG | 4 cut(s) | 2, 75, 232, 475 |
| DpnI | GATC | 2 cut(s) | 11, 359 |
| DpnII | GATC | 2 cut(s) | 9, 357 |
| DraI | TTTAAA | 1 cut(s) | 61 |
| Eco130I | CCWWGG | 1 cut(s) | 570 |
| Eco57I | CTGAAG | 1 cut(s) | 315 |
| Eco88I | CYCGRG | 1 cut(s) | 188 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 155 |
| EcoRI | GAATTC | 1 cut(s) | 323 |
| EcoT14I | CCWWGG | 1 cut(s) | 570 |
| ErhI | CCWWGG | 1 cut(s) | 570 |
| Esp3I | CGTCTC | 1 cut(s) | 391 |
| FaeI | CATG | 3 cut(s) | 127, 455, 472 |
| FatI | CATG | 3 cut(s) | 123, 451, 468 |
| Fnu4HI | GCNGC | 2 cut(s) | 51, 54 |
| Fsp4HI | GCNGC | 2 cut(s) | 51, 54 |
| FspBI | CTAG | 2 cut(s) | 432, 519 |
| GlaI | GCGC | 1 cut(s) | 135 |
| GluI | GCNGC | 2 cut(s) | 51, 54 |
| HapII | CCGG | 1 cut(s) | 545 |
| HgaI | GACGC | 2 cut(s) | 140, 444 |
| HhaI | GCGC | 1 cut(s) | 136 |
| Hin1II | CATG | 3 cut(s) | 127, 455, 472 |
| Hin6I | GCGC | 1 cut(s) | 134 |
| HinP1I | GCGC | 1 cut(s) | 134 |
| HinfI | GANTC | 3 cut(s) | 215, 367, 548 |
| HpaII | CCGG | 1 cut(s) | 545 |
| Hpy166II | GTNNAC | 1 cut(s) | 332 |
| Hpy188I | TCNGA | 2 cut(s) | 295, 417 |
| Hpy188III | TCNNGA | 6 cut(s) | 26, 227, 361, 452, 519, 545 |
| Hpy8I | GTNNAC | 1 cut(s) | 332 |
| HpyAV | CCTTC | 1 cut(s) | 388 |
| HpyCH4IV | ACGT | 1 cut(s) | 30 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 62, 71, 92 |
| HpyF3I | CTNAG | 4 cut(s) | 2, 75, 232, 475 |
| HpySE526I | ACGT | 1 cut(s) | 30 |
| Hsp92II | CATG | 3 cut(s) | 127, 455, 472 |
| HspAI | GCGC | 1 cut(s) | 134 |
| Kpn2I | TCCGGA | 1 cut(s) | 544 |
| Kzo9I | GATC | 2 cut(s) | 9, 357 |
| LmnI | GCTCC | 1 cut(s) | 141 |
| LpnPI | CCDG | 4 cut(s) | 11, 233, 240, 558 |
| Lsp1109I | GCAGC | 2 cut(s) | 37, 40 |
| LweI | GCATC | 1 cut(s) | 447 |
| MaeI | CTAG | 2 cut(s) | 432, 519 |
| MaeII | ACGT | 1 cut(s) | 30 |
| MaeIII | GTNAC | 1 cut(s) | 560 |
| MalI | GATC | 2 cut(s) | 11, 359 |
| MboI | GATC | 2 cut(s) | 9, 357 |
| MboII | GAAGA | 3 cut(s) | 173, 376, 517 |
| MluCI | AATT | 4 cut(s) | 289, 323, 459, 553 |
| MlyI | GAGTC | 2 cut(s) | 361, 557 |
| MnlI | CCTC | 9 cut(s) | 51, 76, 151, 161, 218, 263, 392, 569, 577 |
| MroI | TCCGGA | 1 cut(s) | 544 |
| MroXI | GAANNNNTTC | 1 cut(s) | 300 |
| MseI | TTAA | 1 cut(s) | 60 |
| MslI | CAYNNNNRTG | 2 cut(s) | 126, 500 |
| MspI | CCGG | 1 cut(s) | 545 |
| MvnI | CGCG | 1 cut(s) | 134 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 62, 71, 92 |
| NdeII | GATC | 2 cut(s) | 9, 357 |
| NlaIII | CATG | 3 cut(s) | 127, 455, 472 |
| NlaIV | GGNNCC | 1 cut(s) | 532 |
| NmuCI | GTSAC | 1 cut(s) | 560 |
| PaeR7I | CTCGAG | 1 cut(s) | 188 |
| PagI | TCATGA | 1 cut(s) | 451 |
| PdmI | GAANNNNTTC | 1 cut(s) | 300 |
| PfeI | GAWTC | 1 cut(s) | 215 |
| PkrI | GCNGC | 2 cut(s) | 52, 55 |
| PleI | GAGTC | 2 cut(s) | 361, 556 |
| PpsI | GAGTC | 2 cut(s) | 361, 556 |
| PspN4I | GGNNCC | 1 cut(s) | 532 |
| PspXI | VCTCGAGB | 1 cut(s) | 188 |
| RsaI | GTAC | 3 cut(s) | 7, 149, 279 |
| RsaNI | GTAC | 3 cut(s) | 6, 148, 278 |
| RseI | CAYNNNNRTG | 2 cut(s) | 126, 500 |
| SaqAI | TTAA | 1 cut(s) | 60 |
| SatI | GCNGC | 2 cut(s) | 51, 54 |
| Sau3AI | GATC | 2 cut(s) | 9, 357 |
| SchI | GAGTC | 2 cut(s) | 361, 557 |
| SetI | ASST | 9 cut(s) | 33, 52, 76, 97, 153, 210, 380, 459, 481 |
| SfaNI | GCATC | 1 cut(s) | 447 |
| Sfr274I | CTCGAG | 1 cut(s) | 188 |
| SlaI | CTCGAG | 1 cut(s) | 188 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 126, 500 |
| SmlI | CTYRAG | 1 cut(s) | 188 |
| SmoI | CTYRAG | 1 cut(s) | 188 |
| Sse9I | AATT | 4 cut(s) | 289, 323, 459, 553 |
| SsiI | CCGC | 1 cut(s) | 256 |
| SspMI | CTAG | 2 cut(s) | 432, 519 |
| StyI | CCWWGG | 1 cut(s) | 570 |
| TaiI | ACGT | 1 cut(s) | 33 |
| TaqI | TCGA | 2 cut(s) | 189, 360 |
| TasI | AATT | 4 cut(s) | 289, 323, 459, 553 |
| TatI | WGTACW | 1 cut(s) | 277 |
| TfiI | GAWTC | 1 cut(s) | 215 |
| Tru1I | TTAA | 1 cut(s) | 60 |
| Tru9I | TTAA | 1 cut(s) | 60 |
| TscAI | CASTG | 2 cut(s) | 200, 349 |
| TseFI | GTSAC | 1 cut(s) | 560 |
| TseI | GCWGC | 2 cut(s) | 50, 53 |
| Tsp45I | GTSAC | 1 cut(s) | 560 |
| TspDTI | ATGAA | 5 cut(s) | 105, 140, 293, 440, 485 |
| TspGWI | ACGGA | 1 cut(s) | 200 |
| TspRI | CASTG | 2 cut(s) | 200, 349 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 155 |
| XapI | RAATTY | 1 cut(s) | 323 |
| XbaI | TCTAGA | 1 cut(s) | 518 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 174 |
| XhoI | CTCGAG | 1 cut(s) | 188 |
| XmnI | GAANNNNTTC | 1 cut(s) | 300 |
| XspI | CTAG | 2 cut(s) | 432, 519 |