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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 534 |
| Acc36I | ACCTGC | 1 cut(s) | 624 |
| AccB1I | GGYRCC | 3 cut(s) | 710, 731, 752 |
| AccBSI | CCGCTC | 1 cut(s) | 562 |
| AciI | CCGC | 3 cut(s) | 391, 562, 610 |
| AclWI | GGATC | 3 cut(s) | 114, 422, 841 |
| AcsI | RAATTY | 1 cut(s) | 484 |
| AcuI | CTGAAG | 1 cut(s) | 417 |
| AcyI | GRCGYC | 2 cut(s) | 163, 732 |
| AdeI | CACNNNGTG | 2 cut(s) | 656, 782 |
| AfaI | GTAC | 1 cut(s) | 540 |
| AfeI | AGCGCT | 1 cut(s) | 242 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 37, 297, 548, 549, 619, 672, 701, 766 |
| AflII | CTTAAG | 1 cut(s) | 569 |
| AflIII | ACRYGT | 2 cut(s) | 668, 816 |
| AgsI | TTSAA | 5 cut(s) | 69, 286, 381, 495, 889 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 286, 314 |
| AjnI | CCWGG | 2 cut(s) | 90, 694 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 98, 130 |
| AluBI | AGCT | 4 cut(s) | 21, 220, 331, 455 |
| AluI | AGCT | 4 cut(s) | 21, 220, 331, 455 |
| Alw21I | GWGCWC | 2 cut(s) | 787, 909 |
| Alw26I | GTCTC | 1 cut(s) | 855 |
| Alw44I | GTGCAC | 2 cut(s) | 783, 905 |
| AlwI | GGATC | 3 cut(s) | 114, 422, 841 |
| Aor51HI | AGCGCT | 1 cut(s) | 242 |
| AoxI | GGCC | 1 cut(s) | 497 |
| ApaLI | GTGCAC | 2 cut(s) | 783, 905 |
| ApoI | RAATTY | 1 cut(s) | 484 |
| AspA2I | CCTAGG | 1 cut(s) | 764 |
| AspLEI | GCGC | 5 cut(s) | 232, 243, 249, 555, 734 |
| AspS9I | GGNCC | 2 cut(s) | 498, 599 |
| AsuC2I | CCSGG | 1 cut(s) | 104 |
| AsuHPI | GGTGA | 1 cut(s) | 865 |
| AvaII | GGWCC | 1 cut(s) | 599 |
| AvrII | CCTAGG | 1 cut(s) | 764 |
| BaeGI | GKGCMC | 2 cut(s) | 787, 909 |
| BanI | GGYRCC | 3 cut(s) | 710, 731, 752 |
| BauI | CACGAG | 2 cut(s) | 418, 720 |
| Bbv12I | GWGCWC | 2 cut(s) | 787, 909 |
| BccI | CCATC | 1 cut(s) | 876 |
| BciT130I | CCWGG | 2 cut(s) | 92, 696 |
| BciVI | GTATCC | 1 cut(s) | 701 |
| BcnI | CCSGG | 1 cut(s) | 104 |
| BcoDI | GTCTC | 1 cut(s) | 855 |
| BfaI | CTAG | 2 cut(s) | 8, 765 |
| BfmI | CTRYAG | 1 cut(s) | 631 |
| BfoI | RGCGCY | 2 cut(s) | 244, 735 |
| BfrI | CTTAAG | 1 cut(s) | 569 |
| BfuAI | ACCTGC | 1 cut(s) | 624 |
| BfuI | GTATCC | 1 cut(s) | 701 |
| BlnI | CCTAGG | 1 cut(s) | 764 |
| Bme1390I | CCNGG | 3 cut(s) | 92, 104, 696 |
| Bme18I | GGWCC | 1 cut(s) | 599 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 286, 314 |
| BmgT120I | GGNCC | 2 cut(s) | 498, 599 |
| BmiI | GGNNCC | 5 cut(s) | 566, 600, 712, 733, 754 |
| BmrFI | CCNGG | 3 cut(s) | 92, 104, 696 |
| BmsI | GCATC | 2 cut(s) | 147, 199 |
| BoxI | GACNNNNGTC | 1 cut(s) | 819 |
| BpuEI | CTTGAG | 1 cut(s) | 126 |
| BpuMI | CCSGG | 1 cut(s) | 104 |
| Bsa29I | ATCGAT | 1 cut(s) | 826 |
| BsaAI | YACGTR | 1 cut(s) | 671 |
| BsaBI | GATNNNNATC | 1 cut(s) | 832 |
| BsaHI | GRCGYC | 2 cut(s) | 163, 732 |
| BsaJI | CCNNGG | 3 cut(s) | 694, 714, 764 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 182, 212, 667, 697, 745, 775 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 37, 297, 548, 549, 619, 672, 701, 766 |
| Bse3DI | GCAATG | 3 cut(s) | 262, 667, 817 |
| Bse8I | GATNNNNATC | 1 cut(s) | 832 |
| BseBI | CCWGG | 2 cut(s) | 92, 696 |
| BseCI | ATCGAT | 1 cut(s) | 826 |
| BseDI | CCNNGG | 3 cut(s) | 694, 714, 764 |
| BseGI | GGATG | 4 cut(s) | 214, 596, 864, 919 |
| BseJI | GATNNNNATC | 1 cut(s) | 832 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 37, 297, 548, 549, 619, 672, 701, 766 |
| BseMI | GCAATG | 3 cut(s) | 262, 667, 817 |
| BseMII | CTCAG | 2 cut(s) | 447, 803 |
| BseRI | GAGGAG | 1 cut(s) | 263 |
| BseSI | GKGCMC | 2 cut(s) | 787, 909 |
| BshFI | GGCC | 1 cut(s) | 499 |
| BshNI | GGYRCC | 3 cut(s) | 710, 731, 752 |
| BshVI | ATCGAT | 1 cut(s) | 826 |
| BsiHKAI | GWGCWC | 2 cut(s) | 787, 909 |
| BsiSI | CCGG | 1 cut(s) | 104 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 37, 297, 548, 549, 619, 672, 701, 766 |
| BsmAI | GTCTC | 1 cut(s) | 855 |
| BsmI | GAATGC | 1 cut(s) | 516 |
| BsnI | GGCC | 1 cut(s) | 499 |
| Bsp1286I | GDGCHC | 2 cut(s) | 787, 909 |
| Bsp143I | GATC | 4 cut(s) | 106, 201, 414, 833 |
| Bsp19I | CCATGG | 1 cut(s) | 714 |
| BspACI | CCGC | 3 cut(s) | 391, 562, 610 |
| BspANI | GGCC | 1 cut(s) | 499 |
| BspCNI | CTCAG | 2 cut(s) | 448, 802 |
| BspDI | ATCGAT | 1 cut(s) | 826 |
| BspHI | TCATGA | 1 cut(s) | 520 |
| BspLI | GGNNCC | 5 cut(s) | 566, 600, 712, 733, 754 |
| BspMAI | CTGCAG | 1 cut(s) | 635 |
| BspMI | ACCTGC | 1 cut(s) | 624 |
| BspPI | GGATC | 3 cut(s) | 114, 422, 841 |
| BspQI | GCTCTTC | 1 cut(s) | 231 |
| BspT107I | GGYRCC | 3 cut(s) | 710, 731, 752 |
| BspTI | CTTAAG | 1 cut(s) | 569 |
| BsrBI | CCGCTC | 1 cut(s) | 562 |
| BsrDI | GCAATG | 3 cut(s) | 262, 667, 817 |
| BssECI | CCNNGG | 3 cut(s) | 694, 714, 764 |
| BssMI | GATC | 4 cut(s) | 106, 201, 414, 833 |
| BssNI | GRCGYC | 2 cut(s) | 163, 732 |
| BssSI | CACGAG | 2 cut(s) | 418, 720 |
| BssT1I | CCWWGG | 2 cut(s) | 714, 764 |
| Bst2BI | CACGAG | 2 cut(s) | 418, 720 |
| Bst2UI | CCWGG | 2 cut(s) | 92, 696 |
| Bst4CI | ACNGT | 1 cut(s) | 35 |
| Bst6I | CTCTTC | 1 cut(s) | 231 |
| BstACI | GRCGYC | 2 cut(s) | 163, 732 |
| BstAFI | CTTAAG | 1 cut(s) | 569 |
| BstBAI | YACGTR | 1 cut(s) | 671 |
| BstC8I | GCNNGC | 2 cut(s) | 138, 245 |
| BstDEI | CTNAG | 3 cut(s) | 182, 456, 789 |
| BstDSI | CCRYGG | 1 cut(s) | 714 |
| BstEII | GGTNACC | 1 cut(s) | 40 |
| BstF5I | GGATG | 4 cut(s) | 214, 596, 864, 919 |
| BstH2I | RGCGCY | 2 cut(s) | 244, 735 |
| BstHHI | GCGC | 5 cut(s) | 232, 243, 249, 555, 734 |
| BstKTI | GATC | 4 cut(s) | 109, 204, 417, 836 |
| BstMAI | GTCTC | 1 cut(s) | 855 |
| BstMBI | GATC | 4 cut(s) | 106, 201, 414, 833 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 238, 559 |
| BstNI | CCWGG | 2 cut(s) | 92, 696 |
| BstNSI | RCATGY | 2 cut(s) | 140, 820 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 819 |
| BstPI | GGTNACC | 1 cut(s) | 40 |
| BstSCI | CCNGG | 3 cut(s) | 90, 102, 694 |
| BstSFI | CTRYAG | 1 cut(s) | 631 |
| BstSLI | GKGCMC | 2 cut(s) | 787, 909 |
| Bsu15I | ATCGAT | 1 cut(s) | 826 |
| BsuI | GTATCC | 1 cut(s) | 701 |
| BsuRI | GGCC | 1 cut(s) | 499 |
| BsuTUI | ATCGAT | 1 cut(s) | 826 |
| BtgI | CCRYGG | 1 cut(s) | 714 |
| BtsCI | GGATG | 4 cut(s) | 214, 596, 864, 919 |
| BtsIMutI | CAGTG | 1 cut(s) | 393 |
| BveI | ACCTGC | 1 cut(s) | 624 |
| Cac8I | GCNNGC | 2 cut(s) | 138, 245 |
| CciI | TCATGA | 1 cut(s) | 520 |
| CfoI | GCGC | 5 cut(s) | 232, 243, 249, 555, 734 |
| Cfr13I | GGNCC | 2 cut(s) | 498, 599 |
| ClaI | ATCGAT | 1 cut(s) | 826 |
| CseI | GACGC | 1 cut(s) | 171 |
| Csp6I | GTAC | 1 cut(s) | 539 |
| CviAII | CATG | 7 cut(s) | 137, 292, 464, 521, 701, 715, 817 |
| CviJI | RGCY | 7 cut(s) | 21, 220, 331, 368, 455, 499, 719 |
| CviKI_1 | RGCY | 7 cut(s) | 21, 220, 331, 368, 455, 499, 719 |
| CviQI | GTAC | 1 cut(s) | 539 |
| DdeI | CTNAG | 3 cut(s) | 182, 456, 789 |
| DinI | GGCGCC | 1 cut(s) | 733 |
| DpnI | GATC | 4 cut(s) | 108, 203, 416, 835 |
| DpnII | GATC | 4 cut(s) | 106, 201, 414, 833 |
| DraIII | CACNNNGTG | 2 cut(s) | 656, 782 |
| DriI | GACNNNNNGTC | 2 cut(s) | 286, 314 |
| Eam1104I | CTCTTC | 1 cut(s) | 231 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 286, 314 |
| EarI | CTCTTC | 1 cut(s) | 231 |
| Eco130I | CCWWGG | 2 cut(s) | 714, 764 |
| Eco47I | GGWCC | 1 cut(s) | 599 |
| Eco47III | AGCGCT | 1 cut(s) | 242 |
| Eco57I | CTGAAG | 1 cut(s) | 417 |
| Eco91I | GGTNACC | 1 cut(s) | 40 |
| EcoO65I | GGTNACC | 1 cut(s) | 40 |
| EcoRII | CCWGG | 2 cut(s) | 90, 694 |
| EcoT14I | CCWWGG | 2 cut(s) | 714, 764 |
| EgeI | GGCGCC | 1 cut(s) | 733 |
| EheI | GGCGCC | 1 cut(s) | 733 |
| ErhI | CCWWGG | 2 cut(s) | 714, 764 |
| FaeI | CATG | 7 cut(s) | 140, 295, 467, 524, 704, 718, 820 |
| FatI | CATG | 7 cut(s) | 136, 291, 463, 520, 700, 714, 816 |
| FauNDI | CATATG | 1 cut(s) | 168 |
| FokI | GGATG | 4 cut(s) | 221, 603, 851, 926 |
| FspBI | CTAG | 2 cut(s) | 8, 765 |
| GlaI | GCGC | 5 cut(s) | 231, 242, 248, 554, 733 |
| HaeII | RGCGCY | 2 cut(s) | 244, 735 |
| HaeIII | GGCC | 1 cut(s) | 499 |
| HapII | CCGG | 1 cut(s) | 104 |
| HgaI | GACGC | 1 cut(s) | 171 |
| HhaI | GCGC | 5 cut(s) | 232, 243, 249, 555, 734 |
| Hin1I | GRCGYC | 2 cut(s) | 163, 732 |
| Hin1II | CATG | 7 cut(s) | 140, 295, 467, 524, 704, 718, 820 |
| Hin6I | GCGC | 5 cut(s) | 230, 241, 247, 553, 732 |
| HinP1I | GCGC | 5 cut(s) | 230, 241, 247, 553, 732 |
| HinfI | GANTC | 2 cut(s) | 11, 266 |
| HpaII | CCGG | 1 cut(s) | 104 |
| HphI | GGTGA | 1 cut(s) | 865 |
| Hpy166II | GTNNAC | 3 cut(s) | 308, 785, 907 |
| Hpy188I | TCNGA | 1 cut(s) | 25 |
| Hpy188III | TCNNGA | 3 cut(s) | 154, 418, 521 |
| Hpy8I | GTNNAC | 3 cut(s) | 308, 785, 907 |
| Hpy99I | CGWCG | 1 cut(s) | 165 |
| HpyAV | CCTTC | 2 cut(s) | 364, 617 |
| HpyCH4III | ACNGT | 1 cut(s) | 35 |
| HpyCH4IV | ACGT | 2 cut(s) | 670, 781 |
| HpyCH4V | TGCA | 5 cut(s) | 212, 633, 785, 810, 907 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 238, 559 |
| HpyF3I | CTNAG | 3 cut(s) | 182, 456, 789 |
| HpySE526I | ACGT | 2 cut(s) | 670, 781 |
| Hsp92I | GRCGYC | 2 cut(s) | 163, 732 |
| Hsp92II | CATG | 7 cut(s) | 140, 295, 467, 524, 704, 718, 820 |
| HspAI | GCGC | 5 cut(s) | 230, 241, 247, 553, 732 |
| KasI | GGCGCC | 1 cut(s) | 731 |
| Kzo9I | GATC | 4 cut(s) | 106, 201, 414, 833 |
| LguI | GCTCTTC | 1 cut(s) | 231 |
| LmnI | GCTCC | 1 cut(s) | 559 |
| LweI | GCATC | 2 cut(s) | 147, 199 |
| MaeI | CTAG | 2 cut(s) | 8, 765 |
| MaeII | ACGT | 2 cut(s) | 670, 781 |
| MaeIII | GTNAC | 2 cut(s) | 40, 316 |
| MalI | GATC | 4 cut(s) | 108, 203, 416, 835 |
| MbiI | CCGCTC | 1 cut(s) | 562 |
| MboI | GATC | 4 cut(s) | 106, 201, 414, 833 |
| MboII | GAAGA | 4 cut(s) | 248, 854, 857, 860 |
| MhlI | GDGCHC | 2 cut(s) | 787, 909 |
| MluCI | AATT | 4 cut(s) | 333, 484, 490, 529 |
| Mly113I | GGCGCC | 1 cut(s) | 732 |
| MlyI | GAGTC | 1 cut(s) | 5 |
| MseI | TTAA | 3 cut(s) | 489, 570, 794 |
| MslI | CAYNNNNRTG | 4 cut(s) | 476, 705, 828, 912 |
| MspCI | CTTAAG | 1 cut(s) | 569 |
| MspI | CCGG | 1 cut(s) | 104 |
| MspR9I | CCNGG | 3 cut(s) | 92, 104, 696 |
| Mva1269I | GAATGC | 1 cut(s) | 516 |
| MvaI | CCWGG | 2 cut(s) | 92, 696 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 238, 559 |
| NarI | GGCGCC | 1 cut(s) | 732 |
| NciI | CCSGG | 1 cut(s) | 104 |
| NcoI | CCATGG | 1 cut(s) | 714 |
| NdeI | CATATG | 1 cut(s) | 168 |
| NdeII | GATC | 4 cut(s) | 106, 201, 414, 833 |
| NlaIII | CATG | 7 cut(s) | 140, 295, 467, 524, 704, 718, 820 |
| NlaIV | GGNNCC | 5 cut(s) | 566, 600, 712, 733, 754 |
| NmuCI | GTSAC | 1 cut(s) | 316 |
| NspI | RCATGY | 2 cut(s) | 140, 820 |
| PaeI | GCATGC | 1 cut(s) | 140 |
| PagI | TCATGA | 1 cut(s) | 520 |
| PciI | ACATGT | 1 cut(s) | 816 |
| PciSI | GCTCTTC | 1 cut(s) | 231 |
| PctI | GAATGC | 1 cut(s) | 516 |
| PfeI | GAWTC | 1 cut(s) | 266 |
| PleI | GAGTC | 1 cut(s) | 5 |
| PluTI | GGCGCC | 1 cut(s) | 735 |
| PpsI | GAGTC | 1 cut(s) | 5 |
| Ppu21I | YACGTR | 1 cut(s) | 671 |
| PscI | ACATGT | 1 cut(s) | 816 |
| PshAI | GACNNNNGTC | 1 cut(s) | 819 |
| PsiI | TTATAA | 1 cut(s) | 534 |
| Psp6I | CCWGG | 2 cut(s) | 90, 694 |
| PspEI | GGTNACC | 1 cut(s) | 40 |
| PspGI | CCWGG | 2 cut(s) | 90, 694 |
| PspN4I | GGNNCC | 5 cut(s) | 566, 600, 712, 733, 754 |
| PspPI | GGNCC | 2 cut(s) | 498, 599 |
| PstI | CTGCAG | 1 cut(s) | 635 |
| RsaI | GTAC | 1 cut(s) | 540 |
| RsaNI | GTAC | 1 cut(s) | 539 |
| RseI | CAYNNNNRTG | 4 cut(s) | 476, 705, 828, 912 |
| SapI | GCTCTTC | 1 cut(s) | 231 |
| SaqAI | TTAA | 3 cut(s) | 489, 570, 794 |
| Sau3AI | GATC | 4 cut(s) | 106, 201, 414, 833 |
| Sau96I | GGNCC | 2 cut(s) | 498, 599 |
| SchI | GAGTC | 1 cut(s) | 5 |
| ScrFI | CCNGG | 3 cut(s) | 92, 104, 696 |
| SduI | GDGCHC | 2 cut(s) | 787, 909 |
| SfaNI | GCATC | 2 cut(s) | 147, 199 |
| SfcI | CTRYAG | 1 cut(s) | 631 |
| SfoI | GGCGCC | 1 cut(s) | 733 |
| SinI | GGWCC | 1 cut(s) | 599 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 476, 705, 828, 912 |
| SmlI | CTYRAG | 2 cut(s) | 141, 569 |
| SmoI | CTYRAG | 2 cut(s) | 141, 569 |
| SphI | GCATGC | 1 cut(s) | 140 |
| Sse9I | AATT | 4 cut(s) | 333, 484, 490, 529 |
| SsiI | CCGC | 3 cut(s) | 391, 562, 610 |
| SspDI | GGCGCC | 1 cut(s) | 731 |
| SspI | AATATT | 1 cut(s) | 78 |
| SspMI | CTAG | 2 cut(s) | 8, 765 |
| StyD4I | CCNGG | 3 cut(s) | 90, 102, 694 |
| StyI | CCWWGG | 2 cut(s) | 714, 764 |
| TaaI | ACNGT | 1 cut(s) | 35 |
| TaiI | ACGT | 2 cut(s) | 673, 784 |
| TaqI | TCGA | 2 cut(s) | 200, 826 |
| TasI | AATT | 4 cut(s) | 333, 484, 490, 529 |
| TfiI | GAWTC | 1 cut(s) | 266 |
| Tru1I | TTAA | 3 cut(s) | 489, 570, 794 |
| Tru9I | TTAA | 3 cut(s) | 489, 570, 794 |
| TscAI | CASTG | 1 cut(s) | 400 |
| TseFI | GTSAC | 1 cut(s) | 316 |
| Tsp45I | GTSAC | 1 cut(s) | 316 |
| TspDTI | ATGAA | 4 cut(s) | 17, 416, 509, 915 |
| TspGWI | ACGGA | 1 cut(s) | 427 |
| TspRI | CASTG | 1 cut(s) | 400 |
| Vha464I | CTTAAG | 1 cut(s) | 569 |
| VneI | GTGCAC | 2 cut(s) | 783, 905 |
| VpaK11BI | GGWCC | 1 cut(s) | 599 |
| XapI | RAATTY | 1 cut(s) | 484 |
| XceI | RCATGY | 2 cut(s) | 140, 820 |
| XmaJI | CCTAGG | 1 cut(s) | 764 |
| XspI | CTAG | 2 cut(s) | 8, 765 |