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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 428 |
| AccI | GTMKAC | 1 cut(s) | 560 |
| AciI | CCGC | 1 cut(s) | 106 |
| AclI | AACGTT | 1 cut(s) | 310 |
| AcoI | YGGCCR | 1 cut(s) | 415 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 1 cut(s) | 429 |
| AgsI | TTSAA | 3 cut(s) | 121, 308, 466 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 3 cut(s) | 128, 461, 538 |
| AluI | AGCT | 3 cut(s) | 128, 461, 538 |
| Alw21I | GWGCWC | 1 cut(s) | 540 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AoxI | GGCC | 1 cut(s) | 415 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| AspLEI | GCGC | 2 cut(s) | 431, 472 |
| AspS9I | GGNCC | 1 cut(s) | 317 |
| AsuHPI | GGTGA | 1 cut(s) | 546 |
| AvaII | GGWCC | 1 cut(s) | 317 |
| BaeGI | GKGCMC | 1 cut(s) | 525 |
| BalI | TGGCCA | 1 cut(s) | 417 |
| BanI | GGYRCC | 1 cut(s) | 428 |
| BanII | GRGCYC | 1 cut(s) | 540 |
| BauI | CACGAG | 1 cut(s) | 539 |
| BbsI | GAAGAC | 1 cut(s) | 18 |
| Bbv12I | GWGCWC | 1 cut(s) | 540 |
| BccI | CCATC | 4 cut(s) | 87, 241, 440, 456 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciVI | GTATCC | 1 cut(s) | 292 |
| BclI | TGATCA | 1 cut(s) | 513 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BfoI | RGCGCY | 2 cut(s) | 432, 473 |
| BfuI | GTATCC | 1 cut(s) | 292 |
| Bme18I | GGWCC | 1 cut(s) | 317 |
| BmgT120I | GGNCC | 1 cut(s) | 317 |
| BmiI | GGNNCC | 2 cut(s) | 371, 430 |
| BpiI | GAAGAC | 1 cut(s) | 18 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 1 cut(s) | 429 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| Bse118I | RCCGGY | 1 cut(s) | 348 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseRI | GAGGAG | 1 cut(s) | 400 |
| BseSI | GKGCMC | 1 cut(s) | 525 |
| BshFI | GGCC | 1 cut(s) | 417 |
| BshNI | GGYRCC | 1 cut(s) | 428 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 1 cut(s) | 540 |
| BsiSI | CCGG | 1 cut(s) | 349 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| BsnI | GGCC | 1 cut(s) | 417 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 2 cut(s) | 525, 540 |
| Bsp143I | GATC | 3 cut(s) | 189, 288, 513 |
| BspACI | CCGC | 1 cut(s) | 106 |
| BspANI | GGCC | 1 cut(s) | 417 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspLI | GGNNCC | 2 cut(s) | 371, 430 |
| BspT107I | GGYRCC | 1 cut(s) | 428 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrFI | RCCGGY | 1 cut(s) | 348 |
| BssAI | RCCGGY | 1 cut(s) | 348 |
| BssMI | GATC | 3 cut(s) | 189, 288, 513 |
| BssNI | GRCGYC | 1 cut(s) | 429 |
| BssSI | CACGAG | 1 cut(s) | 539 |
| Bst2BI | CACGAG | 1 cut(s) | 539 |
| Bst4CI | ACNGT | 1 cut(s) | 558 |
| BstACI | GRCGYC | 1 cut(s) | 429 |
| BstDEI | CTNAG | 2 cut(s) | 255, 441 |
| BstEII | GGTNACC | 1 cut(s) | 344 |
| BstH2I | RGCGCY | 2 cut(s) | 432, 473 |
| BstHHI | GCGC | 2 cut(s) | 431, 472 |
| BstKTI | GATC | 3 cut(s) | 192, 291, 516 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMBI | GATC | 3 cut(s) | 189, 288, 513 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 358, 467 |
| BstPI | GGTNACC | 1 cut(s) | 344 |
| BstSLI | GKGCMC | 1 cut(s) | 525 |
| BstV2I | GAAGAC | 1 cut(s) | 18 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 425 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuI | GTATCC | 1 cut(s) | 292 |
| BsuRI | GGCC | 1 cut(s) | 417 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| CfoI | GCGC | 2 cut(s) | 431, 472 |
| Cfr10I | RCCGGY | 1 cut(s) | 348 |
| Cfr13I | GGNCC | 1 cut(s) | 317 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CviAII | CATG | 2 cut(s) | 419, 612 |
| CviJI | RGCY | 8 cut(s) | 25, 102, 128, 417, 447, 461, 538, 597 |
| CviKI_1 | RGCY | 8 cut(s) | 25, 102, 128, 417, 447, 461, 538, 597 |
| DdeI | CTNAG | 2 cut(s) | 255, 441 |
| DinI | GGCGCC | 1 cut(s) | 430 |
| DpnI | GATC | 3 cut(s) | 191, 290, 515 |
| DpnII | GATC | 3 cut(s) | 189, 288, 513 |
| EaeI | YGGCCR | 1 cut(s) | 415 |
| Ecl136II | GAGCTC | 1 cut(s) | 538 |
| Eco24I | GRGCYC | 1 cut(s) | 540 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 1 cut(s) | 317 |
| Eco53kI | GAGCTC | 1 cut(s) | 538 |
| Eco91I | GGTNACC | 1 cut(s) | 344 |
| EcoICRI | GAGCTC | 1 cut(s) | 538 |
| EcoO65I | GGTNACC | 1 cut(s) | 344 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoT38I | GRGCYC | 1 cut(s) | 540 |
| EgeI | GGCGCC | 1 cut(s) | 430 |
| EheI | GGCGCC | 1 cut(s) | 430 |
| FaeI | CATG | 2 cut(s) | 422, 615 |
| FaiI | YATR | 7 cut(s) | 99, 322, 324, 420, 492, 570, 613 |
| FatI | CATG | 2 cut(s) | 418, 611 |
| FbaI | TGATCA | 1 cut(s) | 513 |
| FblI | GTMKAC | 1 cut(s) | 560 |
| FriOI | GRGCYC | 1 cut(s) | 540 |
| FspBI | CTAG | 1 cut(s) | 83 |
| GlaI | GCGC | 2 cut(s) | 430, 471 |
| HaeII | RGCGCY | 2 cut(s) | 432, 473 |
| HaeIII | GGCC | 1 cut(s) | 417 |
| HapII | CCGG | 1 cut(s) | 349 |
| HhaI | GCGC | 2 cut(s) | 431, 472 |
| Hin1I | GRCGYC | 1 cut(s) | 429 |
| Hin1II | CATG | 2 cut(s) | 422, 615 |
| Hin6I | GCGC | 2 cut(s) | 429, 470 |
| HinP1I | GCGC | 2 cut(s) | 429, 470 |
| HincII | GTYRAC | 1 cut(s) | 383 |
| HindII | GTYRAC | 1 cut(s) | 383 |
| HindIII | AAGCTT | 1 cut(s) | 459 |
| HinfI | GANTC | 2 cut(s) | 65, 267 |
| HpaII | CCGG | 1 cut(s) | 349 |
| HphI | GGTGA | 1 cut(s) | 546 |
| Hpy166II | GTNNAC | 2 cut(s) | 383, 561 |
| Hpy188I | TCNGA | 1 cut(s) | 513 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 131, 484, 497, 541 |
| Hpy8I | GTNNAC | 2 cut(s) | 383, 561 |
| HpyAV | CCTTC | 3 cut(s) | 15, 238, 335 |
| HpyCH4III | ACNGT | 1 cut(s) | 558 |
| HpyCH4IV | ACGT | 3 cut(s) | 57, 310, 385 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 281 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 358, 467 |
| HpyF3I | CTNAG | 2 cut(s) | 255, 441 |
| HpySE526I | ACGT | 3 cut(s) | 57, 310, 385 |
| Hsp92I | GRCGYC | 1 cut(s) | 429 |
| Hsp92II | CATG | 2 cut(s) | 422, 615 |
| HspAI | GCGC | 2 cut(s) | 429, 470 |
| KasI | GGCGCC | 1 cut(s) | 428 |
| Ksp22I | TGATCA | 1 cut(s) | 513 |
| Kzo9I | GATC | 3 cut(s) | 189, 288, 513 |
| LpnPI | CCDG | 6 cut(s) | 31, 83, 90, 300, 362, 399 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeII | ACGT | 3 cut(s) | 57, 310, 385 |
| MaeIII | GTNAC | 4 cut(s) | 62, 274, 344, 552 |
| MalI | GATC | 3 cut(s) | 191, 290, 515 |
| MboI | GATC | 3 cut(s) | 189, 288, 513 |
| MboII | GAAGA | 4 cut(s) | 20, 23, 53, 556 |
| MhlI | GDGCHC | 2 cut(s) | 525, 540 |
| MlsI | TGGCCA | 1 cut(s) | 417 |
| MluCI | AATT | 1 cut(s) | 173 |
| MluNI | TGGCCA | 1 cut(s) | 417 |
| Mly113I | GGCGCC | 1 cut(s) | 429 |
| MlyI | GAGTC | 1 cut(s) | 59 |
| MnlI | CCTC | 7 cut(s) | 113, 230, 391, 395, 421, 483, 608 |
| Mox20I | TGGCCA | 1 cut(s) | 417 |
| MscI | TGGCCA | 1 cut(s) | 417 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 2 cut(s) | 423, 610 |
| Msp20I | TGGCCA | 1 cut(s) | 417 |
| MspI | CCGG | 1 cut(s) | 349 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 358, 467 |
| NarI | GGCGCC | 1 cut(s) | 429 |
| NdeII | GATC | 3 cut(s) | 189, 288, 513 |
| NlaIII | CATG | 2 cut(s) | 422, 615 |
| NlaIV | GGNNCC | 2 cut(s) | 371, 430 |
| NmuCI | GTSAC | 2 cut(s) | 62, 552 |
| PfeI | GAWTC | 1 cut(s) | 267 |
| PleI | GAGTC | 1 cut(s) | 59 |
| PluTI | GGCGCC | 1 cut(s) | 432 |
| PpsI | GAGTC | 1 cut(s) | 59 |
| Psp124BI | GAGCTC | 1 cut(s) | 540 |
| Psp1406I | AACGTT | 1 cut(s) | 310 |
| PspEI | GGTNACC | 1 cut(s) | 344 |
| PspN4I | GGNNCC | 2 cut(s) | 371, 430 |
| PspPI | GGNCC | 1 cut(s) | 317 |
| RseI | CAYNNNNRTG | 2 cut(s) | 423, 610 |
| SacI | GAGCTC | 1 cut(s) | 540 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 3 cut(s) | 189, 288, 513 |
| Sau96I | GGNCC | 1 cut(s) | 317 |
| SchI | GAGTC | 1 cut(s) | 59 |
| SduI | GDGCHC | 2 cut(s) | 525, 540 |
| SfoI | GGCGCC | 1 cut(s) | 430 |
| SinI | GGWCC | 1 cut(s) | 317 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 423, 610 |
| Sse9I | AATT | 1 cut(s) | 173 |
| SsiI | CCGC | 1 cut(s) | 106 |
| SspDI | GGCGCC | 1 cut(s) | 428 |
| SspMI | CTAG | 1 cut(s) | 83 |
| SstI | GAGCTC | 1 cut(s) | 540 |
| TaaI | ACNGT | 1 cut(s) | 558 |
| TaiI | ACGT | 3 cut(s) | 60, 313, 388 |
| TaqI | TCGA | 5 cut(s) | 39, 143, 265, 270, 483 |
| TasI | AATT | 1 cut(s) | 173 |
| TfiI | GAWTC | 1 cut(s) | 267 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TseFI | GTSAC | 2 cut(s) | 62, 552 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 552 |
| TspDTI | ATGAA | 2 cut(s) | 17, 21 |
| TspGWI | ACGGA | 2 cut(s) | 50, 382 |
| VpaK11BI | GGWCC | 1 cut(s) | 317 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XmiI | GTMKAC | 1 cut(s) | 560 |
| XspI | CTAG | 1 cut(s) | 83 |