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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 234 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 570 |
| AccB1I | GGYRCC | 1 cut(s) | 410 |
| AccII | CGCG | 1 cut(s) | 510 |
| AccIII | TCCGGA | 1 cut(s) | 490 |
| AciI | CCGC | 1 cut(s) | 202 |
| AcoI | YGGCCR | 1 cut(s) | 277 |
| AcyI | GRCGYC | 1 cut(s) | 411 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 521, 592 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 4 cut(s) | 22, 167, 217, 351 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 4 cut(s) | 155, 245, 403, 425 |
| AluI | AGCT | 4 cut(s) | 155, 245, 403, 425 |
| Alw21I | GWGCWC | 3 cut(s) | 141, 405, 622 |
| Alw26I | GTCTC | 3 cut(s) | 32, 264, 337 |
| Alw44I | GTGCAC | 1 cut(s) | 618 |
| Aor13HI | TCCGGA | 1 cut(s) | 490 |
| AoxI | GGCC | 2 cut(s) | 277, 552 |
| ApaLI | GTGCAC | 1 cut(s) | 618 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 246 |
| AspLEI | GCGC | 4 cut(s) | 50, 81, 413, 512 |
| AspS9I | GGNCC | 3 cut(s) | 67, 552, 572 |
| AvaII | GGWCC | 2 cut(s) | 67, 572 |
| BaeGI | GKGCMC | 1 cut(s) | 622 |
| BalI | TGGCCA | 1 cut(s) | 279 |
| BanI | GGYRCC | 1 cut(s) | 410 |
| BanII | GRGCYC | 1 cut(s) | 405 |
| BbsI | GAAGAC | 1 cut(s) | 317 |
| Bbv12I | GWGCWC | 3 cut(s) | 141, 405, 622 |
| BccI | CCATC | 3 cut(s) | 92, 122, 183 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 3 cut(s) | 32, 264, 337 |
| BfaI | CTAG | 3 cut(s) | 35, 126, 465 |
| BfmI | CTRYAG | 1 cut(s) | 502 |
| BfoI | RGCGCY | 1 cut(s) | 414 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| Bme18I | GGWCC | 2 cut(s) | 67, 572 |
| BmgT120I | GGNCC | 3 cut(s) | 67, 552, 572 |
| BmiI | GGNNCC | 2 cut(s) | 68, 412 |
| BpiI | GAAGAC | 1 cut(s) | 317 |
| BsaBI | GATNNNNATC | 1 cut(s) | 302 |
| BsaHI | GRCGYC | 1 cut(s) | 411 |
| BsaJI | CCNNGG | 2 cut(s) | 471, 630 |
| BsaWI | WCCGGW | 1 cut(s) | 490 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 125, 155 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 521, 592 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse8I | GATNNNNATC | 1 cut(s) | 302 |
| BseAI | TCCGGA | 1 cut(s) | 490 |
| BseDI | CCNNGG | 2 cut(s) | 471, 630 |
| BseGI | GGATG | 2 cut(s) | 114, 303 |
| BseJI | GATNNNNATC | 1 cut(s) | 302 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 521, 592 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseSI | GKGCMC | 1 cut(s) | 622 |
| Bsh1236I | CGCG | 1 cut(s) | 510 |
| BshFI | GGCC | 2 cut(s) | 279, 554 |
| BshNI | GGYRCC | 1 cut(s) | 410 |
| BsiHKAI | GWGCWC | 3 cut(s) | 141, 405, 622 |
| BsiSI | CCGG | 1 cut(s) | 491 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 521, 592 |
| BsmAI | GTCTC | 3 cut(s) | 32, 264, 337 |
| BsmBI | CGTCTC | 1 cut(s) | 337 |
| BsnI | GGCC | 2 cut(s) | 279, 554 |
| Bsp1286I | GDGCHC | 3 cut(s) | 141, 405, 622 |
| Bsp13I | TCCGGA | 1 cut(s) | 490 |
| Bsp143I | GATC | 1 cut(s) | 303 |
| BspACI | CCGC | 1 cut(s) | 202 |
| BspANI | GGCC | 2 cut(s) | 279, 554 |
| BspEI | TCCGGA | 1 cut(s) | 490 |
| BspFNI | CGCG | 1 cut(s) | 510 |
| BspHI | TCATGA | 1 cut(s) | 397 |
| BspLI | GGNNCC | 2 cut(s) | 68, 412 |
| BspQI | GCTCTTC | 1 cut(s) | 252 |
| BspT107I | GGYRCC | 1 cut(s) | 410 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 2 cut(s) | 471, 630 |
| BssMI | GATC | 1 cut(s) | 303 |
| BssNI | GRCGYC | 1 cut(s) | 411 |
| Bst4CI | ACNGT | 1 cut(s) | 631 |
| Bst6I | CTCTTC | 1 cut(s) | 252 |
| BstACI | GRCGYC | 1 cut(s) | 411 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 618 |
| BstDEI | CTNAG | 2 cut(s) | 480, 543 |
| BstDSI | CCRYGG | 2 cut(s) | 471, 630 |
| BstF5I | GGATG | 2 cut(s) | 114, 303 |
| BstFNI | CGCG | 1 cut(s) | 510 |
| BstH2I | RGCGCY | 1 cut(s) | 414 |
| BstHHI | GCGC | 4 cut(s) | 50, 81, 413, 512 |
| BstKTI | GATC | 1 cut(s) | 306 |
| BstMAI | GTCTC | 3 cut(s) | 32, 264, 337 |
| BstMBI | GATC | 1 cut(s) | 303 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 167 |
| BstSFI | CTRYAG | 1 cut(s) | 502 |
| BstSLI | GKGCMC | 1 cut(s) | 622 |
| BstUI | CGCG | 1 cut(s) | 510 |
| BstV2I | GAAGAC | 1 cut(s) | 317 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 2 cut(s) | 279, 554 |
| BtgI | CCRYGG | 2 cut(s) | 471, 630 |
| BtgZI | GCGATG | 1 cut(s) | 202 |
| BtsCI | GGATG | 2 cut(s) | 114, 303 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 618 |
| CciI | TCATGA | 1 cut(s) | 397 |
| CfoI | GCGC | 4 cut(s) | 50, 81, 413, 512 |
| Cfr13I | GGNCC | 3 cut(s) | 67, 552, 572 |
| CseI | GACGC | 1 cut(s) | 534 |
| CviAII | CATG | 2 cut(s) | 398, 415 |
| DdeI | CTNAG | 2 cut(s) | 480, 543 |
| DinI | GGCGCC | 1 cut(s) | 412 |
| DpnI | GATC | 1 cut(s) | 305 |
| DpnII | GATC | 1 cut(s) | 303 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 570 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 570 |
| EaeI | YGGCCR | 1 cut(s) | 277 |
| Eam1104I | CTCTTC | 1 cut(s) | 252 |
| EarI | CTCTTC | 1 cut(s) | 252 |
| Ecl136II | GAGCTC | 1 cut(s) | 403 |
| Eco24I | GRGCYC | 1 cut(s) | 405 |
| Eco47I | GGWCC | 2 cut(s) | 67, 572 |
| Eco53kI | GAGCTC | 1 cut(s) | 403 |
| EcoICRI | GAGCTC | 1 cut(s) | 403 |
| EcoT38I | GRGCYC | 1 cut(s) | 405 |
| EgeI | GGCGCC | 1 cut(s) | 412 |
| EheI | GGCGCC | 1 cut(s) | 412 |
| Esp3I | CGTCTC | 1 cut(s) | 337 |
| FaeI | CATG | 2 cut(s) | 401, 418 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 2 cut(s) | 397, 414 |
| FauNDI | CATATG | 1 cut(s) | 577 |
| FokI | GGATG | 2 cut(s) | 101, 310 |
| FriOI | GRGCYC | 1 cut(s) | 405 |
| FspBI | CTAG | 3 cut(s) | 35, 126, 465 |
| GlaI | GCGC | 4 cut(s) | 49, 80, 412, 511 |
| HaeII | RGCGCY | 1 cut(s) | 414 |
| HaeIII | GGCC | 2 cut(s) | 279, 554 |
| HapII | CCGG | 1 cut(s) | 491 |
| HgaI | GACGC | 1 cut(s) | 534 |
| HhaI | GCGC | 4 cut(s) | 50, 81, 413, 512 |
| Hin1I | GRCGYC | 1 cut(s) | 411 |
| Hin1II | CATG | 2 cut(s) | 401, 418 |
| Hin6I | GCGC | 4 cut(s) | 48, 79, 411, 510 |
| HinP1I | GCGC | 4 cut(s) | 48, 79, 411, 510 |
| HinfI | GANTC | 2 cut(s) | 313, 494 |
| HpaII | CCGG | 1 cut(s) | 491 |
| Hpy166II | GTNNAC | 1 cut(s) | 620 |
| Hpy188I | TCNGA | 3 cut(s) | 71, 132, 363 |
| Hpy188III | TCNNGA | 5 cut(s) | 107, 307, 398, 491, 561 |
| Hpy8I | GTNNAC | 1 cut(s) | 620 |
| HpyAV | CCTTC | 2 cut(s) | 334, 590 |
| HpyCH4III | ACNGT | 1 cut(s) | 631 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 382, 420 |
| HpyCH4V | TGCA | 3 cut(s) | 338, 377, 620 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 167 |
| HpyF3I | CTNAG | 2 cut(s) | 480, 543 |
| HpySE526I | ACGT | 3 cut(s) | 135, 382, 420 |
| Hsp92I | GRCGYC | 1 cut(s) | 411 |
| Hsp92II | CATG | 2 cut(s) | 401, 418 |
| HspAI | GCGC | 4 cut(s) | 48, 79, 411, 510 |
| KasI | GGCGCC | 1 cut(s) | 410 |
| Kpn2I | TCCGGA | 1 cut(s) | 490 |
| Kzo9I | GATC | 1 cut(s) | 303 |
| LguI | GCTCTTC | 1 cut(s) | 252 |
| LmnI | GCTCC | 1 cut(s) | 532 |
| LpnPI | CCDG | 8 cut(s) | 23, 30, 36, 92, 363, 504, 546, 555 |
| MaeI | CTAG | 3 cut(s) | 35, 126, 465 |
| MaeII | ACGT | 3 cut(s) | 135, 382, 420 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 1 cut(s) | 305 |
| MboI | GATC | 1 cut(s) | 303 |
| MboII | GAAGA | 3 cut(s) | 239, 322, 463 |
| MhlI | GDGCHC | 3 cut(s) | 141, 405, 622 |
| MlsI | TGGCCA | 1 cut(s) | 279 |
| MluCI | AATT | 2 cut(s) | 355, 556 |
| MluNI | TGGCCA | 1 cut(s) | 279 |
| Mly113I | GGCGCC | 1 cut(s) | 411 |
| MlyI | GAGTC | 2 cut(s) | 307, 503 |
| MnlI | CCTC | 5 cut(s) | 209, 515, 586, 606, 628 |
| Mox20I | TGGCCA | 1 cut(s) | 279 |
| MroI | TCCGGA | 1 cut(s) | 490 |
| MroXI | GAANNNNTTC | 1 cut(s) | 246 |
| MscI | TGGCCA | 1 cut(s) | 279 |
| MseI | TTAA | 1 cut(s) | 90 |
| Msp20I | TGGCCA | 1 cut(s) | 279 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 491 |
| MvnI | CGCG | 1 cut(s) | 510 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 167 |
| NarI | GGCGCC | 1 cut(s) | 411 |
| NdeI | CATATG | 1 cut(s) | 577 |
| NdeII | GATC | 1 cut(s) | 303 |
| NlaIII | CATG | 2 cut(s) | 401, 418 |
| NlaIV | GGNNCC | 2 cut(s) | 68, 412 |
| PagI | TCATGA | 1 cut(s) | 397 |
| PciSI | GCTCTTC | 1 cut(s) | 252 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 532 |
| PdmI | GAANNNNTTC | 1 cut(s) | 246 |
| PleI | GAGTC | 2 cut(s) | 307, 502 |
| PluTI | GGCGCC | 1 cut(s) | 414 |
| PpsI | GAGTC | 2 cut(s) | 307, 502 |
| PsiI | TTATAA | 1 cut(s) | 234 |
| Psp124BI | GAGCTC | 1 cut(s) | 405 |
| PspN4I | GGNNCC | 2 cut(s) | 68, 412 |
| PspPI | GGNCC | 3 cut(s) | 67, 552, 572 |
| SacI | GAGCTC | 1 cut(s) | 405 |
| SapI | GCTCTTC | 1 cut(s) | 252 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| Sau3AI | GATC | 1 cut(s) | 303 |
| Sau96I | GGNCC | 3 cut(s) | 67, 552, 572 |
| SchI | GAGTC | 2 cut(s) | 307, 503 |
| SduI | GDGCHC | 3 cut(s) | 141, 405, 622 |
| SfcI | CTRYAG | 1 cut(s) | 502 |
| SfoI | GGCGCC | 1 cut(s) | 412 |
| SinI | GGWCC | 2 cut(s) | 67, 572 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 2 cut(s) | 355, 556 |
| SsiI | CCGC | 1 cut(s) | 202 |
| SspDI | GGCGCC | 1 cut(s) | 410 |
| SspI | AATATT | 1 cut(s) | 442 |
| SspMI | CTAG | 3 cut(s) | 35, 126, 465 |
| SstI | GAGCTC | 1 cut(s) | 405 |
| TaaI | ACNGT | 1 cut(s) | 631 |
| TaiI | ACGT | 3 cut(s) | 138, 385, 423 |
| TaqI | TCGA | 1 cut(s) | 306 |
| TasI | AATT | 2 cut(s) | 355, 556 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TspDTI | ATGAA | 2 cut(s) | 386, 431 |
| TspGWI | ACGGA | 1 cut(s) | 637 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 618 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 572 |
| XmnI | GAANNNNTTC | 1 cut(s) | 246 |
| XspI | CTAG | 3 cut(s) | 35, 126, 465 |