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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 384 |
| AciI | CCGC | 1 cut(s) | 397 |
| AclWI | GGATC | 2 cut(s) | 335, 441 |
| AcoI | YGGCCR | 1 cut(s) | 483 |
| AcvI | CACGTG | 2 cut(s) | 439, 457 |
| AdeI | CACNNNGTG | 1 cut(s) | 442 |
| AfaI | GTAC | 2 cut(s) | 38, 307 |
| AfeI | AGCGCT | 2 cut(s) | 75, 86 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 406, 458, 487 |
| AflIII | ACRYGT | 3 cut(s) | 39, 226, 454 |
| AgsI | TTSAA | 4 cut(s) | 124, 131, 160, 183 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| AjnI | CCWGG | 1 cut(s) | 480 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 3 cut(s) | 64, 188, 244 |
| AluI | AGCT | 3 cut(s) | 64, 188, 244 |
| AlwI | GGATC | 2 cut(s) | 335, 441 |
| Ama87I | CYCGRG | 1 cut(s) | 371 |
| Aor51HI | AGCGCT | 2 cut(s) | 75, 86 |
| AoxI | GGCC | 1 cut(s) | 483 |
| AspLEI | GCGC | 4 cut(s) | 76, 87, 147, 499 |
| AspS9I | GGNCC | 1 cut(s) | 386 |
| AsuHPI | GGTGA | 1 cut(s) | 440 |
| AvaI | CYCGRG | 1 cut(s) | 371 |
| AvaII | GGWCC | 1 cut(s) | 386 |
| BauI | CACGAG | 1 cut(s) | 331 |
| BbrPI | CACGTG | 2 cut(s) | 439, 457 |
| BceAI | ACGGC | 1 cut(s) | 470 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BciT130I | CCWGG | 1 cut(s) | 482 |
| BciVI | GTATCC | 1 cut(s) | 487 |
| BfaI | CTAG | 1 cut(s) | 77 |
| BfoI | RGCGCY | 3 cut(s) | 77, 88, 500 |
| BfuI | GTATCC | 1 cut(s) | 487 |
| Bme1390I | CCNGG | 1 cut(s) | 482 |
| Bme18I | GGWCC | 1 cut(s) | 386 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| BmeT110I | CYCGRG | 1 cut(s) | 371 |
| BmgT120I | GGNCC | 1 cut(s) | 386 |
| BmiI | GGNNCC | 2 cut(s) | 353, 387 |
| BmrFI | CCNGG | 1 cut(s) | 482 |
| BmsI | GCATC | 1 cut(s) | 43 |
| BpuEI | CTTGAG | 1 cut(s) | 326 |
| BsaAI | YACGTR | 2 cut(s) | 439, 457 |
| BsaJI | CCNNGG | 3 cut(s) | 309, 480, 486 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 26, 56, 453, 483 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 406, 458, 487 |
| Bse3DI | GCAATG | 2 cut(s) | 100, 453 |
| BseBI | CCWGG | 1 cut(s) | 482 |
| BseDI | CCNNGG | 3 cut(s) | 309, 480, 486 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 406, 458, 487 |
| BseMI | GCAATG | 2 cut(s) | 100, 453 |
| BseMII | CTCAG | 1 cut(s) | 40 |
| BseRI | GAGGAG | 2 cut(s) | 101, 349 |
| BshFI | GGCC | 1 cut(s) | 485 |
| BsiHKCI | CYCGRG | 1 cut(s) | 371 |
| BslFI | GGGAC | 2 cut(s) | 381, 390 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 406, 458, 487 |
| BsmFI | GGGAC | 2 cut(s) | 381, 390 |
| BsnI | GGCC | 1 cut(s) | 485 |
| BsoBI | CYCGRG | 1 cut(s) | 371 |
| Bsp143I | GATC | 4 cut(s) | 45, 288, 327, 433 |
| BspACI | CCGC | 1 cut(s) | 397 |
| BspANI | GGCC | 1 cut(s) | 485 |
| BspCNI | CTCAG | 1 cut(s) | 39 |
| BspLI | GGNNCC | 2 cut(s) | 353, 387 |
| BspPI | GGATC | 2 cut(s) | 335, 441 |
| BspQI | GCTCTTC | 2 cut(s) | 75, 195 |
| BsrDI | GCAATG | 2 cut(s) | 100, 453 |
| BssECI | CCNNGG | 3 cut(s) | 309, 480, 486 |
| BssMI | GATC | 4 cut(s) | 45, 288, 327, 433 |
| BssSI | CACGAG | 1 cut(s) | 331 |
| Bst2BI | CACGAG | 1 cut(s) | 331 |
| Bst2UI | CCWGG | 1 cut(s) | 482 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 195 |
| BstBAI | YACGTR | 2 cut(s) | 439, 457 |
| BstDEI | CTNAG | 2 cut(s) | 26, 357 |
| BstDSI | CCRYGG | 1 cut(s) | 486 |
| BstH2I | RGCGCY | 3 cut(s) | 77, 88, 500 |
| BstHHI | GCGC | 4 cut(s) | 76, 87, 147, 499 |
| BstKTI | GATC | 4 cut(s) | 48, 291, 330, 436 |
| BstMBI | GATC | 4 cut(s) | 45, 288, 327, 433 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 82 |
| BstNI | CCWGG | 1 cut(s) | 482 |
| BstNSI | RCATGY | 2 cut(s) | 43, 230 |
| BstSCI | CCNGG | 1 cut(s) | 480 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 425 |
| BsuI | GTATCC | 1 cut(s) | 487 |
| BsuRI | GGCC | 1 cut(s) | 485 |
| BtgI | CCRYGG | 1 cut(s) | 486 |
| CfoI | GCGC | 4 cut(s) | 76, 87, 147, 499 |
| Cfr13I | GGNCC | 1 cut(s) | 386 |
| Csp6I | GTAC | 2 cut(s) | 37, 306 |
| CviAII | CATG | 3 cut(s) | 40, 205, 227 |
| CviJI | RGCY | 5 cut(s) | 64, 188, 244, 340, 485 |
| CviKI_1 | RGCY | 5 cut(s) | 64, 188, 244, 340, 485 |
| CviQI | GTAC | 2 cut(s) | 37, 306 |
| DdeI | CTNAG | 2 cut(s) | 26, 357 |
| DpnI | GATC | 4 cut(s) | 47, 290, 329, 435 |
| DpnII | GATC | 4 cut(s) | 45, 288, 327, 433 |
| DraIII | CACNNNGTG | 1 cut(s) | 442 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 384 |
| DriI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 384 |
| EaeI | YGGCCR | 1 cut(s) | 483 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 195 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| EarI | CTCTTC | 2 cut(s) | 75, 195 |
| Eco47I | GGWCC | 1 cut(s) | 386 |
| Eco47III | AGCGCT | 2 cut(s) | 75, 86 |
| Eco72I | CACGTG | 2 cut(s) | 439, 457 |
| Eco88I | CYCGRG | 1 cut(s) | 371 |
| EcoRII | CCWGG | 1 cut(s) | 480 |
| FaeI | CATG | 3 cut(s) | 43, 208, 230 |
| FaqI | GGGAC | 2 cut(s) | 381, 390 |
| FatI | CATG | 3 cut(s) | 39, 204, 226 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FspBI | CTAG | 1 cut(s) | 77 |
| GlaI | GCGC | 4 cut(s) | 75, 86, 146, 498 |
| HaeII | RGCGCY | 3 cut(s) | 77, 88, 500 |
| HaeIII | GGCC | 1 cut(s) | 485 |
| HhaI | GCGC | 4 cut(s) | 76, 87, 147, 499 |
| Hin1II | CATG | 3 cut(s) | 43, 208, 230 |
| Hin6I | GCGC | 4 cut(s) | 74, 85, 145, 497 |
| HinP1I | GCGC | 4 cut(s) | 74, 85, 145, 497 |
| HinfI | GANTC | 2 cut(s) | 104, 369 |
| HphI | GGTGA | 1 cut(s) | 440 |
| Hpy166II | GTNNAC | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 1 cut(s) | 29 |
| Hpy188III | TCNNGA | 1 cut(s) | 331 |
| Hpy8I | GTNNAC | 1 cut(s) | 221 |
| HpyAV | CCTTC | 3 cut(s) | 118, 277, 404 |
| HpyCH4IV | ACGT | 3 cut(s) | 379, 438, 456 |
| HpyCH4V | TGCA | 1 cut(s) | 56 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 82 |
| HpyF3I | CTNAG | 2 cut(s) | 26, 357 |
| HpySE526I | ACGT | 3 cut(s) | 379, 438, 456 |
| Hsp92II | CATG | 3 cut(s) | 43, 208, 230 |
| HspAI | GCGC | 4 cut(s) | 74, 85, 145, 497 |
| Kzo9I | GATC | 4 cut(s) | 45, 288, 327, 433 |
| LguI | GCTCTTC | 2 cut(s) | 75, 195 |
| LpnPI | CCDG | 5 cut(s) | 129, 306, 414, 467, 494 |
| LweI | GCATC | 1 cut(s) | 43 |
| MaeI | CTAG | 1 cut(s) | 77 |
| MaeII | ACGT | 3 cut(s) | 379, 438, 456 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MalI | GATC | 4 cut(s) | 47, 290, 329, 435 |
| MboI | GATC | 4 cut(s) | 45, 288, 327, 433 |
| MboII | GAAGA | 2 cut(s) | 92, 182 |
| MfeI | CAATTG | 1 cut(s) | 282 |
| MluCI | AATT | 3 cut(s) | 178, 246, 282 |
| MlyI | GAGTC | 1 cut(s) | 363 |
| MnlI | CCTC | 8 cut(s) | 119, 122, 304, 327, 330, 367, 424, 457 |
| MspR9I | CCNGG | 1 cut(s) | 482 |
| MunI | CAATTG | 1 cut(s) | 282 |
| MvaI | CCWGG | 1 cut(s) | 482 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 82 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 4 cut(s) | 45, 288, 327, 433 |
| NlaIII | CATG | 3 cut(s) | 43, 208, 230 |
| NlaIV | GGNNCC | 2 cut(s) | 353, 387 |
| NmuCI | GTSAC | 1 cut(s) | 229 |
| NspI | RCATGY | 2 cut(s) | 43, 230 |
| PaeR7I | CTCGAG | 1 cut(s) | 371 |
| PciI | ACATGT | 2 cut(s) | 39, 226 |
| PciSI | GCTCTTC | 2 cut(s) | 75, 195 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PleI | GAGTC | 1 cut(s) | 363 |
| PmaCI | CACGTG | 2 cut(s) | 439, 457 |
| PmlI | CACGTG | 2 cut(s) | 439, 457 |
| PpsI | GAGTC | 1 cut(s) | 363 |
| Ppu21I | YACGTR | 2 cut(s) | 439, 457 |
| PscI | ACATGT | 2 cut(s) | 39, 226 |
| Psp6I | CCWGG | 1 cut(s) | 480 |
| PspCI | CACGTG | 2 cut(s) | 439, 457 |
| PspGI | CCWGG | 1 cut(s) | 480 |
| PspN4I | GGNNCC | 2 cut(s) | 353, 387 |
| PspPI | GGNCC | 1 cut(s) | 386 |
| PspXI | VCTCGAGB | 1 cut(s) | 371 |
| RsaI | GTAC | 2 cut(s) | 38, 307 |
| RsaNI | GTAC | 2 cut(s) | 37, 306 |
| SapI | GCTCTTC | 2 cut(s) | 75, 195 |
| Sau3AI | GATC | 4 cut(s) | 45, 288, 327, 433 |
| Sau96I | GGNCC | 1 cut(s) | 386 |
| SchI | GAGTC | 1 cut(s) | 363 |
| ScrFI | CCNGG | 1 cut(s) | 482 |
| SfaNI | GCATC | 1 cut(s) | 43 |
| Sfr274I | CTCGAG | 1 cut(s) | 371 |
| SinI | GGWCC | 1 cut(s) | 386 |
| SlaI | CTCGAG | 1 cut(s) | 371 |
| SmlI | CTYRAG | 2 cut(s) | 341, 371 |
| SmoI | CTYRAG | 2 cut(s) | 341, 371 |
| Sse9I | AATT | 3 cut(s) | 178, 246, 282 |
| SsiI | CCGC | 1 cut(s) | 397 |
| SspMI | CTAG | 1 cut(s) | 77 |
| StyD4I | CCNGG | 1 cut(s) | 480 |
| TaiI | ACGT | 3 cut(s) | 382, 441, 459 |
| TaqI | TCGA | 2 cut(s) | 44, 372 |
| TasI | AATT | 3 cut(s) | 178, 246, 282 |
| TatI | WGTACW | 1 cut(s) | 36 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| TseFI | GTSAC | 1 cut(s) | 229 |
| Tsp45I | GTSAC | 1 cut(s) | 229 |
| TspDTI | ATGAA | 1 cut(s) | 186 |
| TspGWI | ACGGA | 2 cut(s) | 154, 340 |
| VpaK11BI | GGWCC | 1 cut(s) | 386 |
| XceI | RCATGY | 2 cut(s) | 43, 230 |
| XhoI | CTCGAG | 1 cut(s) | 371 |
| XspI | CTAG | 1 cut(s) | 77 |