No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 42 - 176 | 4.9e-06 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 3 cut(s) | 686, 740, 782 |
| AccII | CGCG | 2 cut(s) | 726, 951 |
| AccIII | TCCGGA | 1 cut(s) | 44 |
| AciI | CCGC | 3 cut(s) | 724, 901, 951 |
| AcsI | RAATTY | 1 cut(s) | 380 |
| AcuI | CTGAAG | 3 cut(s) | 159, 234, 618 |
| AcvI | CACGTG | 1 cut(s) | 779 |
| AdeI | CACNNNGTG | 1 cut(s) | 782 |
| AfaI | GTAC | 1 cut(s) | 577 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 658, 686, 710, 740, 782, 835 |
| AgeI | ACCGGT | 1 cut(s) | 572 |
| AgsI | TTSAA | 2 cut(s) | 259, 328 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 226, 895 |
| AjiI | CACGTC | 1 cut(s) | 764 |
| AjnI | CCWGG | 3 cut(s) | 318, 733, 829 |
| AluBI | AGCT | 6 cut(s) | 19, 82, 212, 397, 407, 812 |
| AluI | AGCT | 6 cut(s) | 19, 82, 212, 397, 407, 812 |
| Alw21I | GWGCWC | 1 cut(s) | 399 |
| Alw26I | GTCTC | 1 cut(s) | 234 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 407 |
| Ama87I | CYCGRG | 1 cut(s) | 957 |
| Aor13HI | TCCGGA | 1 cut(s) | 44 |
| AoxI | GGCC | 7 cut(s) | 566, 649, 712, 742, 772, 837, 963 |
| ApeKI | GCWGC | 2 cut(s) | 460, 1025 |
| ApoI | RAATTY | 1 cut(s) | 380 |
| AseI | ATTAAT | 1 cut(s) | 503 |
| AsiGI | ACCGGT | 1 cut(s) | 572 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 425 |
| AsuC2I | CCSGG | 1 cut(s) | 647 |
| AsuHPI | GGTGA | 1 cut(s) | 499 |
| AvaI | CYCGRG | 1 cut(s) | 957 |
| AvaII | GGWCC | 6 cut(s) | 66, 220, 454, 701, 833, 897 |
| BanII | GRGCYC | 1 cut(s) | 399 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 396, 428 |
| BbrPI | CACGTG | 1 cut(s) | 779 |
| BbsI | GAAGAC | 1 cut(s) | 147 |
| Bbv12I | GWGCWC | 1 cut(s) | 399 |
| BbvI | GCAGC | 2 cut(s) | 472, 1037 |
| BccI | CCATC | 5 cut(s) | 93, 270, 281, 518, 624 |
| BceAI | ACGGC | 1 cut(s) | 636 |
| BciT130I | CCWGG | 3 cut(s) | 320, 735, 831 |
| BciVI | GTATCC | 2 cut(s) | 988, 1028 |
| BclI | TGATCA | 1 cut(s) | 556 |
| BcnI | CCSGG | 1 cut(s) | 647 |
| BcoDI | GTCTC | 1 cut(s) | 234 |
| BfaI | CTAG | 3 cut(s) | 245, 489, 579 |
| BfmI | CTRYAG | 1 cut(s) | 458 |
| BfuI | GTATCC | 2 cut(s) | 988, 1028 |
| BisI | GCNGC | 2 cut(s) | 461, 1026 |
| BlsI | GCNGC | 2 cut(s) | 462, 1027 |
| Bme1390I | CCNGG | 4 cut(s) | 320, 647, 735, 831 |
| Bme18I | GGWCC | 6 cut(s) | 66, 220, 454, 701, 833, 897 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 226, 895 |
| BmeT110I | CYCGRG | 1 cut(s) | 957 |
| BmgBI | CACGTC | 1 cut(s) | 764 |
| BmiI | GGNNCC | 6 cut(s) | 68, 222, 644, 650, 703, 899 |
| BmrFI | CCNGG | 4 cut(s) | 320, 647, 735, 831 |
| BpiI | GAAGAC | 1 cut(s) | 147 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 332, 364, 381, 413 |
| BpmI | CTGGAG | 1 cut(s) | 437 |
| BpuEI | CTTGAG | 1 cut(s) | 179 |
| BpuMI | CCSGG | 1 cut(s) | 647 |
| BsaAI | YACGTR | 1 cut(s) | 779 |
| BsaBI | GATNNNNATC | 1 cut(s) | 167 |
| BsaI | GGTCTC | 1 cut(s) | 234 |
| BsaJI | CCNNGG | 8 cut(s) | 224, 646, 652, 680, 733, 746, 829, 1002 |
| BsaWI | WCCGGW | 2 cut(s) | 44, 572 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 424, 454 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 658, 686, 710, 740, 782, 835 |
| Bse118I | RCCGGY | 1 cut(s) | 572 |
| Bse1I | ACTGG | 1 cut(s) | 420 |
| Bse3DI | GCAATG | 1 cut(s) | 745 |
| Bse8I | GATNNNNATC | 1 cut(s) | 167 |
| BseAI | TCCGGA | 1 cut(s) | 44 |
| BseBI | CCWGG | 3 cut(s) | 320, 735, 831 |
| BseDI | CCNNGG | 8 cut(s) | 224, 646, 652, 680, 733, 746, 829, 1002 |
| BseGI | GGATG | 1 cut(s) | 510 |
| BseJI | GATNNNNATC | 1 cut(s) | 167 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 658, 686, 710, 740, 782, 835 |
| BseMI | GCAATG | 1 cut(s) | 745 |
| BseNI | ACTGG | 1 cut(s) | 420 |
| BseRI | GAGGAG | 1 cut(s) | 771 |
| BseXI | GCAGC | 2 cut(s) | 472, 1037 |
| Bsh1236I | CGCG | 2 cut(s) | 726, 951 |
| BshFI | GGCC | 7 cut(s) | 568, 651, 714, 744, 774, 839, 965 |
| BshTI | ACCGGT | 1 cut(s) | 572 |
| BsiHKAI | GWGCWC | 1 cut(s) | 399 |
| BsiHKCI | CYCGRG | 1 cut(s) | 957 |
| BsiSI | CCGG | 6 cut(s) | 45, 284, 361, 573, 646, 836 |
| BslFI | GGGAC | 2 cut(s) | 883, 971 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 658, 686, 710, 740, 782, 835 |
| BsmAI | GTCTC | 1 cut(s) | 234 |
| BsmFI | GGGAC | 2 cut(s) | 883, 971 |
| BsnI | GGCC | 7 cut(s) | 568, 651, 714, 744, 774, 839, 965 |
| Bso31I | GGTCTC | 1 cut(s) | 234 |
| BsoBI | CYCGRG | 1 cut(s) | 957 |
| Bsp1286I | GDGCHC | 1 cut(s) | 399 |
| Bsp13I | TCCGGA | 1 cut(s) | 44 |
| Bsp143I | GATC | 2 cut(s) | 107, 556 |
| BspACI | CCGC | 3 cut(s) | 724, 901, 951 |
| BspANI | GGCC | 7 cut(s) | 568, 651, 714, 744, 774, 839, 965 |
| BspEI | TCCGGA | 1 cut(s) | 44 |
| BspFNI | CGCG | 2 cut(s) | 726, 951 |
| BspLI | GGNNCC | 6 cut(s) | 68, 222, 644, 650, 703, 899 |
| BspMAI | CTGCAG | 1 cut(s) | 462 |
| BspQI | GCTCTTC | 2 cut(s) | 243, 387 |
| BspTNI | GGTCTC | 1 cut(s) | 234 |
| BsrDI | GCAATG | 1 cut(s) | 745 |
| BsrFI | RCCGGY | 1 cut(s) | 572 |
| BsrI | ACTGG | 1 cut(s) | 420 |
| BssAI | RCCGGY | 1 cut(s) | 572 |
| BssECI | CCNNGG | 8 cut(s) | 224, 646, 652, 680, 733, 746, 829, 1002 |
| BssMI | GATC | 2 cut(s) | 107, 556 |
| BssT1I | CCWWGG | 3 cut(s) | 680, 746, 1002 |
| Bst2UI | CCWGG | 3 cut(s) | 320, 735, 831 |
| Bst4CI | ACNGT | 2 cut(s) | 228, 334 |
| Bst6I | CTCTTC | 5 cut(s) | 210, 243, 387, 918, 972 |
| BstBAI | YACGTR | 1 cut(s) | 779 |
| BstC8I | GCNNGC | 1 cut(s) | 522 |
| BstDSI | CCRYGG | 2 cut(s) | 224, 652 |
| BstF5I | GGATG | 1 cut(s) | 510 |
| BstFNI | CGCG | 2 cut(s) | 726, 951 |
| BstKTI | GATC | 2 cut(s) | 110, 559 |
| BstMAI | GTCTC | 1 cut(s) | 234 |
| BstMBI | GATC | 2 cut(s) | 107, 556 |
| BstNI | CCWGG | 3 cut(s) | 320, 735, 831 |
| BstSCI | CCNGG | 4 cut(s) | 318, 645, 733, 829 |
| BstSFI | CTRYAG | 1 cut(s) | 458 |
| BstUI | CGCG | 2 cut(s) | 726, 951 |
| BstV1I | GCAGC | 2 cut(s) | 472, 1037 |
| BstV2I | GAAGAC | 1 cut(s) | 147 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 973 |
| BsuI | GTATCC | 2 cut(s) | 988, 1028 |
| BsuRI | GGCC | 7 cut(s) | 568, 651, 714, 744, 774, 839, 965 |
| BtgI | CCRYGG | 2 cut(s) | 224, 652 |
| BtrI | CACGTC | 1 cut(s) | 764 |
| BtsCI | GGATG | 1 cut(s) | 510 |
| BtsIMutI | CAGTG | 1 cut(s) | 885 |
| Cac8I | GCNNGC | 1 cut(s) | 522 |
| CaiI | CAGNNNCTG | 1 cut(s) | 407 |
| Cfr10I | RCCGGY | 1 cut(s) | 572 |
| CseI | GACGC | 1 cut(s) | 957 |
| Csp6I | GTAC | 1 cut(s) | 576 |
| CspAI | ACCGGT | 1 cut(s) | 572 |
| CviAII | CATG | 2 cut(s) | 145, 686 |
| CviQI | GTAC | 1 cut(s) | 576 |
| DpnI | GATC | 2 cut(s) | 109, 558 |
| DpnII | GATC | 2 cut(s) | 107, 556 |
| DraIII | CACNNNGTG | 1 cut(s) | 782 |
| DriI | GACNNNNNGTC | 2 cut(s) | 226, 895 |
| Eam1104I | CTCTTC | 5 cut(s) | 210, 243, 387, 918, 972 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 226, 895 |
| EarI | CTCTTC | 5 cut(s) | 210, 243, 387, 918, 972 |
| Ecl136II | GAGCTC | 1 cut(s) | 397 |
| Eco130I | CCWWGG | 3 cut(s) | 680, 746, 1002 |
| Eco147I | AGGCCT | 1 cut(s) | 568 |
| Eco24I | GRGCYC | 1 cut(s) | 399 |
| Eco31I | GGTCTC | 1 cut(s) | 234 |
| Eco47I | GGWCC | 6 cut(s) | 66, 220, 454, 701, 833, 897 |
| Eco53kI | GAGCTC | 1 cut(s) | 397 |
| Eco57I | CTGAAG | 3 cut(s) | 159, 234, 618 |
| Eco72I | CACGTG | 1 cut(s) | 779 |
| Eco88I | CYCGRG | 1 cut(s) | 957 |
| EcoICRI | GAGCTC | 1 cut(s) | 397 |
| EcoO109I | RGGNCCY | 1 cut(s) | 220 |
| EcoRII | CCWGG | 3 cut(s) | 318, 733, 829 |
| EcoT14I | CCWWGG | 3 cut(s) | 680, 746, 1002 |
| EcoT38I | GRGCYC | 1 cut(s) | 399 |
| ErhI | CCWWGG | 3 cut(s) | 680, 746, 1002 |
| FaeI | CATG | 2 cut(s) | 148, 689 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 2 cut(s) | 883, 971 |
| FatI | CATG | 2 cut(s) | 144, 685 |
| FauI | CCCGC | 1 cut(s) | 908 |
| FauNDI | CATATG | 2 cut(s) | 180, 718 |
| FbaI | TGATCA | 1 cut(s) | 556 |
| Fnu4HI | GCNGC | 2 cut(s) | 461, 1026 |
| FokI | GGATG | 1 cut(s) | 497 |
| FriOI | GRGCYC | 1 cut(s) | 399 |
| Fsp4HI | GCNGC | 2 cut(s) | 461, 1026 |
| FspBI | CTAG | 3 cut(s) | 245, 489, 579 |
| GluI | GCNGC | 2 cut(s) | 461, 1026 |
| GsuI | CTGGAG | 1 cut(s) | 437 |
| HaeIII | GGCC | 7 cut(s) | 568, 651, 714, 744, 774, 839, 965 |
| HapII | CCGG | 6 cut(s) | 45, 284, 361, 573, 646, 836 |
| HgaI | GACGC | 1 cut(s) | 957 |
| Hin1II | CATG | 2 cut(s) | 148, 689 |
| HindIII | AAGCTT | 1 cut(s) | 17 |
| HinfI | GANTC | 4 cut(s) | 255, 364, 492, 980 |
| HpaII | CCGG | 6 cut(s) | 45, 284, 361, 573, 646, 836 |
| HphI | GGTGA | 1 cut(s) | 499 |
| Hpy166II | GTNNAC | 1 cut(s) | 767 |
| Hpy188I | TCNGA | 5 cut(s) | 90, 352, 499, 673, 806 |
| Hpy188III | TCNNGA | 7 cut(s) | 45, 137, 172, 245, 328, 620, 959 |
| Hpy8I | GTNNAC | 1 cut(s) | 767 |
| Hpy99I | CGWCG | 1 cut(s) | 846 |
| HpyAV | CCTTC | 7 cut(s) | 42, 142, 445, 453, 630, 651, 660 |
| HpyCH4III | ACNGT | 2 cut(s) | 228, 334 |
| HpyCH4IV | ACGT | 3 cut(s) | 676, 763, 778 |
| HpyCH4V | TGCA | 3 cut(s) | 95, 460, 914 |
| HpySE526I | ACGT | 3 cut(s) | 676, 763, 778 |
| Hsp92II | CATG | 2 cut(s) | 148, 689 |
| Kpn2I | TCCGGA | 1 cut(s) | 44 |
| Ksp22I | TGATCA | 1 cut(s) | 556 |
| Kzo9I | GATC | 2 cut(s) | 107, 556 |
| LguI | GCTCTTC | 2 cut(s) | 243, 387 |
| LmnI | GCTCC | 1 cut(s) | 87 |
| Lsp1109I | GCAGC | 2 cut(s) | 472, 1037 |
| MaeI | CTAG | 3 cut(s) | 245, 489, 579 |
| MaeII | ACGT | 3 cut(s) | 676, 763, 778 |
| MaeIII | GTNAC | 1 cut(s) | 369 |
| MalI | GATC | 2 cut(s) | 109, 558 |
| MboI | GATC | 2 cut(s) | 107, 556 |
| MboII | GAAGA | 8 cut(s) | 152, 227, 260, 404, 675, 705, 935, 989 |
| MhlI | GDGCHC | 1 cut(s) | 399 |
| MluCI | AATT | 4 cut(s) | 380, 500, 585, 816 |
| MlyI | GAGTC | 1 cut(s) | 989 |
| MmeI | TCCRAC | 1 cut(s) | 829 |
| MroI | TCCGGA | 1 cut(s) | 44 |
| MroXI | GAANNNNTTC | 1 cut(s) | 425 |
| MseI | TTAA | 1 cut(s) | 503 |
| MspI | CCGG | 6 cut(s) | 45, 284, 361, 573, 646, 836 |
| MspR9I | CCNGG | 4 cut(s) | 320, 647, 735, 831 |
| MvaI | CCWGG | 3 cut(s) | 320, 735, 831 |
| MvnI | CGCG | 2 cut(s) | 726, 951 |
| NciI | CCSGG | 1 cut(s) | 647 |
| NdeI | CATATG | 2 cut(s) | 180, 718 |
| NdeII | GATC | 2 cut(s) | 107, 556 |
| NlaIII | CATG | 2 cut(s) | 148, 689 |
| NlaIV | GGNNCC | 6 cut(s) | 68, 222, 644, 650, 703, 899 |
| NmuCI | GTSAC | 1 cut(s) | 369 |
| PaeR7I | CTCGAG | 1 cut(s) | 957 |
| PceI | AGGCCT | 1 cut(s) | 568 |
| PciSI | GCTCTTC | 2 cut(s) | 243, 387 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 760, 955 |
| PdmI | GAANNNNTTC | 1 cut(s) | 425 |
| PfeI | GAWTC | 3 cut(s) | 255, 364, 492 |
| PflFI | GACNNNGTC | 1 cut(s) | 26 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 686, 740, 782 |
| PfoI | TCCNGGA | 1 cut(s) | 318 |
| PinAI | ACCGGT | 1 cut(s) | 572 |
| PkrI | GCNGC | 2 cut(s) | 462, 1027 |
| PleI | GAGTC | 1 cut(s) | 988 |
| PmaCI | CACGTG | 1 cut(s) | 779 |
| PmlI | CACGTG | 1 cut(s) | 779 |
| PpsI | GAGTC | 1 cut(s) | 988 |
| Ppu21I | YACGTR | 1 cut(s) | 779 |
| PpuMI | RGGWCCY | 1 cut(s) | 220 |
| PshBI | ATTAAT | 1 cut(s) | 503 |
| Psp124BI | GAGCTC | 1 cut(s) | 399 |
| Psp5II | RGGWCCY | 1 cut(s) | 220 |
| Psp6I | CCWGG | 3 cut(s) | 318, 733, 829 |
| PspCI | CACGTG | 1 cut(s) | 779 |
| PspGI | CCWGG | 3 cut(s) | 318, 733, 829 |
| PspN4I | GGNNCC | 6 cut(s) | 68, 222, 644, 650, 703, 899 |
| PspPPI | RGGWCCY | 1 cut(s) | 220 |
| PstI | CTGCAG | 1 cut(s) | 462 |
| PstNI | CAGNNNCTG | 1 cut(s) | 407 |
| PsyI | GACNNNGTC | 1 cut(s) | 26 |
| RsaI | GTAC | 1 cut(s) | 577 |
| RsaNI | GTAC | 1 cut(s) | 576 |
| SacI | GAGCTC | 1 cut(s) | 399 |
| SapI | GCTCTTC | 2 cut(s) | 243, 387 |
| SaqAI | TTAA | 1 cut(s) | 503 |
| SatI | GCNGC | 2 cut(s) | 461, 1026 |
| Sau3AI | GATC | 2 cut(s) | 107, 556 |
| SchI | GAGTC | 1 cut(s) | 989 |
| ScrFI | CCNGG | 4 cut(s) | 320, 647, 735, 831 |
| SduI | GDGCHC | 1 cut(s) | 399 |
| SfcI | CTRYAG | 1 cut(s) | 458 |
| Sfr274I | CTCGAG | 1 cut(s) | 957 |
| SinI | GGWCC | 6 cut(s) | 66, 220, 454, 701, 833, 897 |
| SlaI | CTCGAG | 1 cut(s) | 957 |
| SmlI | CTYRAG | 2 cut(s) | 194, 957 |
| SmoI | CTYRAG | 2 cut(s) | 194, 957 |
| Sse9I | AATT | 4 cut(s) | 380, 500, 585, 816 |
| SseBI | AGGCCT | 1 cut(s) | 568 |
| SsiI | CCGC | 3 cut(s) | 724, 901, 951 |
| SspI | AATATT | 2 cut(s) | 206, 607 |
| SspMI | CTAG | 3 cut(s) | 245, 489, 579 |
| SstI | GAGCTC | 1 cut(s) | 399 |
| StuI | AGGCCT | 1 cut(s) | 568 |
| StyD4I | CCNGG | 4 cut(s) | 318, 645, 733, 829 |
| StyI | CCWWGG | 3 cut(s) | 680, 746, 1002 |
| TaaI | ACNGT | 2 cut(s) | 228, 334 |
| TaiI | ACGT | 3 cut(s) | 679, 766, 781 |
| TaqI | TCGA | 3 cut(s) | 754, 958, 1041 |
| TaqII | GACCGA | 1 cut(s) | 357 |
| TasI | AATT | 4 cut(s) | 380, 500, 585, 816 |
| TfiI | GAWTC | 3 cut(s) | 255, 364, 492 |
| Tru1I | TTAA | 1 cut(s) | 503 |
| Tru9I | TTAA | 1 cut(s) | 503 |
| TscAI | CASTG | 1 cut(s) | 892 |
| TseFI | GTSAC | 1 cut(s) | 369 |
| TseI | GCWGC | 2 cut(s) | 460, 1025 |
| Tsp45I | GTSAC | 1 cut(s) | 369 |
| TspDTI | ATGAA | 3 cut(s) | 157, 161, 936 |
| TspRI | CASTG | 1 cut(s) | 892 |
| Tth111I | GACNNNGTC | 1 cut(s) | 26 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 686, 740, 782 |
| VpaK11BI | GGWCC | 6 cut(s) | 66, 220, 454, 701, 833, 897 |
| VspI | ATTAAT | 1 cut(s) | 503 |
| XapI | RAATTY | 1 cut(s) | 380 |
| XbaI | TCTAGA | 1 cut(s) | 244 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 231, 737, 1028 |
| XhoI | CTCGAG | 1 cut(s) | 957 |
| XmnI | GAANNNNTTC | 1 cut(s) | 425 |
| XspI | CTAG | 3 cut(s) | 245, 489, 579 |