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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 262 |
| AclWI | GGATC | 1 cut(s) | 522 |
| AcsI | RAATTY | 1 cut(s) | 329 |
| AgsI | TTSAA | 2 cut(s) | 34, 277 |
| AjiI | CACGTC | 1 cut(s) | 148 |
| AjnI | CCWGG | 1 cut(s) | 141 |
| AluBI | AGCT | 4 cut(s) | 136, 173, 463, 473 |
| AluI | AGCT | 4 cut(s) | 136, 173, 463, 473 |
| Alw21I | GWGCWC | 1 cut(s) | 465 |
| AlwI | GGATC | 1 cut(s) | 522 |
| Ama87I | CYCGRG | 1 cut(s) | 131 |
| AoxI | GGCC | 1 cut(s) | 105 |
| ApoI | RAATTY | 1 cut(s) | 329 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 306 |
| AvaI | CYCGRG | 1 cut(s) | 131 |
| BanII | GRGCYC | 1 cut(s) | 465 |
| BbsI | GAAGAC | 1 cut(s) | 377 |
| Bbv12I | GWGCWC | 1 cut(s) | 465 |
| BccI | CCATC | 2 cut(s) | 104, 397 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 416, 450 |
| BciT130I | CCWGG | 1 cut(s) | 143 |
| BciVI | GTATCC | 1 cut(s) | 115 |
| BfuI | GTATCC | 1 cut(s) | 115 |
| BlpI | GCTNAGC | 1 cut(s) | 137 |
| Bme1390I | CCNGG | 1 cut(s) | 143 |
| BmeT110I | CYCGRG | 1 cut(s) | 131 |
| BmgBI | CACGTC | 1 cut(s) | 148 |
| BmrFI | CCNGG | 1 cut(s) | 143 |
| BmsI | GCATC | 2 cut(s) | 106, 200 |
| BpiI | GAAGAC | 1 cut(s) | 377 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 137 |
| BpuEI | CTTGAG | 1 cut(s) | 86 |
| Bsa29I | ATCGAT | 1 cut(s) | 426 |
| BsaJI | CCNNGG | 1 cut(s) | 531 |
| Bse1I | ACTGG | 1 cut(s) | 61 |
| BseBI | CCWGG | 1 cut(s) | 143 |
| BseCI | ATCGAT | 1 cut(s) | 426 |
| BseDI | CCNNGG | 1 cut(s) | 531 |
| BseGI | GGATG | 5 cut(s) | 18, 191, 222, 250, 501 |
| BseNI | ACTGG | 1 cut(s) | 61 |
| BshFI | GGCC | 1 cut(s) | 107 |
| BshVI | ATCGAT | 1 cut(s) | 426 |
| BsiHKAI | GWGCWC | 1 cut(s) | 465 |
| BsiHKCI | CYCGRG | 1 cut(s) | 131 |
| BsnI | GGCC | 1 cut(s) | 107 |
| BsoBI | CYCGRG | 1 cut(s) | 131 |
| Bsp1286I | GDGCHC | 1 cut(s) | 465 |
| Bsp143I | GATC | 3 cut(s) | 166, 345, 527 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 137 |
| BspACI | CCGC | 1 cut(s) | 262 |
| BspANI | GGCC | 1 cut(s) | 107 |
| BspDI | ATCGAT | 1 cut(s) | 426 |
| BspHI | TCATGA | 1 cut(s) | 457 |
| BspPI | GGATC | 1 cut(s) | 522 |
| BsrI | ACTGG | 1 cut(s) | 61 |
| BssECI | CCNNGG | 1 cut(s) | 531 |
| BssMI | GATC | 3 cut(s) | 166, 345, 527 |
| Bst2UI | CCWGG | 1 cut(s) | 143 |
| Bst4CI | ACNGT | 1 cut(s) | 157 |
| BstDEI | CTNAG | 3 cut(s) | 137, 196, 411 |
| BstDSI | CCRYGG | 1 cut(s) | 531 |
| BstF5I | GGATG | 5 cut(s) | 18, 191, 222, 250, 501 |
| BstKTI | GATC | 3 cut(s) | 169, 348, 530 |
| BstMBI | GATC | 3 cut(s) | 166, 345, 527 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 179, 188, 209 |
| BstNI | CCWGG | 1 cut(s) | 143 |
| BstSCI | CCNGG | 1 cut(s) | 141 |
| BstV2I | GAAGAC | 1 cut(s) | 377 |
| BstX2I | RGATCY | 1 cut(s) | 527 |
| BstYI | RGATCY | 1 cut(s) | 527 |
| Bsu15I | ATCGAT | 1 cut(s) | 426 |
| BsuI | GTATCC | 1 cut(s) | 115 |
| BsuRI | GGCC | 1 cut(s) | 107 |
| BsuTUI | ATCGAT | 1 cut(s) | 426 |
| BtgI | CCRYGG | 1 cut(s) | 531 |
| BtgZI | GCGATG | 1 cut(s) | 371 |
| BtrI | CACGTC | 1 cut(s) | 148 |
| BtsCI | GGATG | 5 cut(s) | 18, 191, 222, 250, 501 |
| CciI | TCATGA | 1 cut(s) | 457 |
| ClaI | ATCGAT | 1 cut(s) | 426 |
| CviAII | CATG | 2 cut(s) | 458, 494 |
| CviJI | RGCY | 7 cut(s) | 60, 107, 136, 141, 173, 463, 473 |
| CviKI_1 | RGCY | 7 cut(s) | 60, 107, 136, 141, 173, 463, 473 |
| DdeI | CTNAG | 3 cut(s) | 137, 196, 411 |
| DpnI | GATC | 3 cut(s) | 168, 347, 529 |
| DpnII | GATC | 3 cut(s) | 166, 345, 527 |
| Ecl136II | GAGCTC | 1 cut(s) | 463 |
| Eco24I | GRGCYC | 1 cut(s) | 465 |
| Eco32I | GATATC | 1 cut(s) | 88 |
| Eco53kI | GAGCTC | 1 cut(s) | 463 |
| Eco88I | CYCGRG | 1 cut(s) | 131 |
| EcoICRI | GAGCTC | 1 cut(s) | 463 |
| EcoRI | GAATTC | 1 cut(s) | 329 |
| EcoRII | CCWGG | 1 cut(s) | 141 |
| EcoRV | GATATC | 1 cut(s) | 88 |
| EcoT38I | GRGCYC | 1 cut(s) | 465 |
| FaeI | CATG | 2 cut(s) | 461, 497 |
| FaiI | YATR | 7 cut(s) | 240, 242, 459, 476, 495, 519, 541 |
| FatI | CATG | 2 cut(s) | 457, 493 |
| FauNDI | CATATG | 1 cut(s) | 240 |
| FokI | GGATG | 5 cut(s) | 25, 178, 209, 257, 488 |
| FriOI | GRGCYC | 1 cut(s) | 465 |
| HaeIII | GGCC | 1 cut(s) | 107 |
| Hin1II | CATG | 2 cut(s) | 461, 497 |
| HincII | GTYRAC | 1 cut(s) | 220 |
| HindII | GTYRAC | 1 cut(s) | 220 |
| HindIII | AAGCTT | 1 cut(s) | 171 |
| HinfI | GANTC | 7 cut(s) | 114, 127, 232, 248, 373, 423, 444 |
| Hpy166II | GTNNAC | 1 cut(s) | 220 |
| Hpy188I | TCNGA | 2 cut(s) | 64, 301 |
| Hpy188III | TCNNGA | 6 cut(s) | 10, 83, 131, 341, 458, 525 |
| Hpy8I | GTNNAC | 1 cut(s) | 220 |
| HpyCH4III | ACNGT | 1 cut(s) | 157 |
| HpyCH4IV | ACGT | 1 cut(s) | 147 |
| HpyCH4V | TGCA | 1 cut(s) | 437 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 179, 188, 209 |
| HpyF3I | CTNAG | 3 cut(s) | 137, 196, 411 |
| HpySE526I | ACGT | 1 cut(s) | 147 |
| Hsp92II | CATG | 2 cut(s) | 461, 497 |
| Kzo9I | GATC | 3 cut(s) | 166, 345, 527 |
| LmnI | GCTCC | 2 cut(s) | 46, 258 |
| LpnPI | CCDG | 5 cut(s) | 42, 58, 107, 128, 155 |
| LweI | GCATC | 2 cut(s) | 106, 200 |
| MaeII | ACGT | 1 cut(s) | 147 |
| MaeIII | GTNAC | 2 cut(s) | 17, 430 |
| MalI | GATC | 3 cut(s) | 168, 347, 529 |
| MboI | GATC | 3 cut(s) | 166, 345, 527 |
| MboII | GAAGA | 2 cut(s) | 382, 523 |
| MflI | RGATCY | 1 cut(s) | 527 |
| MhlI | GDGCHC | 1 cut(s) | 465 |
| MluCI | AATT | 3 cut(s) | 29, 329, 520 |
| MlyI | GAGTC | 2 cut(s) | 226, 367 |
| MnlI | CCTC | 2 cut(s) | 193, 269 |
| MroXI | GAANNNNTTC | 1 cut(s) | 306 |
| MseI | TTAA | 2 cut(s) | 315, 323 |
| MslI | CAYNNNNRTG | 3 cut(s) | 227, 243, 506 |
| MspR9I | CCNGG | 1 cut(s) | 143 |
| MvaI | CCWGG | 1 cut(s) | 143 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 179, 188, 209 |
| NdeI | CATATG | 1 cut(s) | 240 |
| NdeII | GATC | 3 cut(s) | 166, 345, 527 |
| NlaIII | CATG | 2 cut(s) | 461, 497 |
| PaeR7I | CTCGAG | 1 cut(s) | 131 |
| PagI | TCATGA | 1 cut(s) | 457 |
| PdmI | GAANNNNTTC | 1 cut(s) | 306 |
| PfeI | GAWTC | 5 cut(s) | 114, 127, 248, 423, 444 |
| PleI | GAGTC | 2 cut(s) | 226, 367 |
| PpsI | GAGTC | 2 cut(s) | 226, 367 |
| Psp124BI | GAGCTC | 1 cut(s) | 465 |
| Psp6I | CCWGG | 1 cut(s) | 141 |
| PspGI | CCWGG | 1 cut(s) | 141 |
| PsuI | RGATCY | 1 cut(s) | 527 |
| RseI | CAYNNNNRTG | 3 cut(s) | 227, 243, 506 |
| SacI | GAGCTC | 1 cut(s) | 465 |
| SaqAI | TTAA | 2 cut(s) | 315, 323 |
| Sau3AI | GATC | 3 cut(s) | 166, 345, 527 |
| SchI | GAGTC | 2 cut(s) | 226, 367 |
| ScrFI | CCNGG | 1 cut(s) | 143 |
| SduI | GDGCHC | 1 cut(s) | 465 |
| SetI | ASST | 9 cut(s) | 24, 77, 138, 150, 175, 261, 455, 465, 475 |
| SfaNI | GCATC | 2 cut(s) | 106, 200 |
| Sfr274I | CTCGAG | 1 cut(s) | 131 |
| SlaI | CTCGAG | 1 cut(s) | 131 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 227, 243, 506 |
| SmlI | CTYRAG | 2 cut(s) | 101, 131 |
| SmoI | CTYRAG | 2 cut(s) | 101, 131 |
| Sse9I | AATT | 3 cut(s) | 29, 329, 520 |
| SsiI | CCGC | 1 cut(s) | 262 |
| SstI | GAGCTC | 1 cut(s) | 465 |
| StyD4I | CCNGG | 1 cut(s) | 141 |
| TaaI | ACNGT | 1 cut(s) | 157 |
| TaiI | ACGT | 1 cut(s) | 150 |
| TaqI | TCGA | 3 cut(s) | 132, 426, 524 |
| TasI | AATT | 3 cut(s) | 29, 329, 520 |
| TfiI | GAWTC | 5 cut(s) | 114, 127, 248, 423, 444 |
| Tru1I | TTAA | 2 cut(s) | 315, 323 |
| Tru9I | TTAA | 2 cut(s) | 315, 323 |
| TspDTI | ATGAA | 2 cut(s) | 446, 491 |
| TspGWI | ACGGA | 1 cut(s) | 520 |
| XapI | RAATTY | 1 cut(s) | 329 |
| XhoI | CTCGAG | 1 cut(s) | 131 |
| XmnI | GAANNNNTTC | 1 cut(s) | 306 |