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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 561 |
| AcoI | YGGCCR | 1 cut(s) | 548 |
| AcyI | GRCGYC | 1 cut(s) | 562 |
| AdeI | CACNNNGTG | 1 cut(s) | 743 |
| AfaI | GTAC | 1 cut(s) | 462 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 574, 664 |
| AjiI | CACGTC | 1 cut(s) | 350 |
| AjnI | CCWGG | 1 cut(s) | 343 |
| AluBI | AGCT | 5 cut(s) | 261, 369, 375, 684, 735 |
| AluI | AGCT | 5 cut(s) | 261, 369, 375, 684, 735 |
| Alw21I | GWGCWC | 1 cut(s) | 686 |
| AoxI | GGCC | 3 cut(s) | 101, 307, 548 |
| ApeKI | GCWGC | 3 cut(s) | 119, 141, 393 |
| AspLEI | GCGC | 6 cut(s) | 35, 37, 39, 564, 605, 628 |
| AspS9I | GGNCC | 1 cut(s) | 102 |
| AsuHPI | GGTGA | 2 cut(s) | 56, 692 |
| AsuII | TTCGAA | 1 cut(s) | 598 |
| BaeGI | GKGCMC | 1 cut(s) | 671 |
| BanI | GGYRCC | 1 cut(s) | 561 |
| BanII | GRGCYC | 1 cut(s) | 686 |
| BauI | CACGAG | 1 cut(s) | 685 |
| BbsI | GAAGAC | 1 cut(s) | 487 |
| Bbv12I | GWGCWC | 1 cut(s) | 686 |
| BbvI | GCAGC | 3 cut(s) | 131, 153, 405 |
| BccI | CCATC | 3 cut(s) | 237, 429, 589 |
| BceAI | ACGGC | 1 cut(s) | 124 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 108, 130, 142, 164, 196, 230 |
| BciT130I | CCWGG | 1 cut(s) | 345 |
| BciVI | GTATCC | 1 cut(s) | 665 |
| BfaI | CTAG | 3 cut(s) | 237, 340, 771 |
| BfmI | CTRYAG | 2 cut(s) | 117, 139 |
| BfoI | RGCGCY | 2 cut(s) | 565, 606 |
| BfuI | GTATCC | 1 cut(s) | 665 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 402 |
| BisI | GCNGC | 6 cut(s) | 79, 120, 131, 142, 153, 394 |
| BlsI | GCNGC | 6 cut(s) | 80, 121, 132, 143, 154, 395 |
| Bme1390I | CCNGG | 1 cut(s) | 345 |
| BmgBI | CACGTC | 1 cut(s) | 350 |
| BmgT120I | GGNCC | 1 cut(s) | 102 |
| BmiI | GGNNCC | 4 cut(s) | 104, 504, 563, 579 |
| BmrFI | CCNGG | 1 cut(s) | 345 |
| BmsI | GCATC | 6 cut(s) | 90, 131, 142, 153, 164, 322 |
| BpiI | GAAGAC | 1 cut(s) | 487 |
| BpmI | CTGGAG | 1 cut(s) | 441 |
| Bpu14I | TTCGAA | 1 cut(s) | 598 |
| BpuEI | CTTGAG | 3 cut(s) | 302, 318, 355 |
| BsaHI | GRCGYC | 1 cut(s) | 562 |
| BsaJI | CCNNGG | 2 cut(s) | 76, 106 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 574, 664 |
| Bse118I | RCCGGY | 1 cut(s) | 3 |
| Bse1I | ACTGG | 2 cut(s) | 67, 458 |
| BseBI | CCWGG | 1 cut(s) | 345 |
| BseDI | CCNNGG | 2 cut(s) | 76, 106 |
| BseGI | GGATG | 6 cut(s) | 122, 133, 144, 155, 424, 452 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 574, 664 |
| BseMII | CTCAG | 1 cut(s) | 613 |
| BseNI | ACTGG | 2 cut(s) | 67, 458 |
| BsePI | GCGCGC | 2 cut(s) | 33, 35 |
| BseSI | GKGCMC | 1 cut(s) | 671 |
| BseXI | GCAGC | 3 cut(s) | 131, 153, 405 |
| Bsh1285I | CGRYCG | 1 cut(s) | 57 |
| BshFI | GGCC | 3 cut(s) | 103, 309, 550 |
| BshNI | GGYRCC | 1 cut(s) | 561 |
| BsiEI | CGRYCG | 1 cut(s) | 57 |
| BsiHKAI | GWGCWC | 1 cut(s) | 686 |
| BsiSI | CCGG | 2 cut(s) | 4, 547 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 574, 664 |
| BsmI | GAATGC | 1 cut(s) | 111 |
| BsnI | GGCC | 3 cut(s) | 103, 309, 550 |
| Bsp119I | TTCGAA | 1 cut(s) | 598 |
| Bsp1286I | GDGCHC | 2 cut(s) | 671, 686 |
| Bsp143I | GATC | 3 cut(s) | 659, 755, 767 |
| BspANI | GGCC | 3 cut(s) | 103, 309, 550 |
| BspCNI | CTCAG | 1 cut(s) | 614 |
| BspLI | GGNNCC | 4 cut(s) | 104, 504, 563, 579 |
| BspMAI | CTGCAG | 2 cut(s) | 121, 143 |
| BspT104I | TTCGAA | 1 cut(s) | 598 |
| BspT107I | GGYRCC | 1 cut(s) | 561 |
| BsrFI | RCCGGY | 1 cut(s) | 3 |
| BsrI | ACTGG | 2 cut(s) | 67, 458 |
| BssAI | RCCGGY | 1 cut(s) | 3 |
| BssECI | CCNNGG | 2 cut(s) | 76, 106 |
| BssHII | GCGCGC | 2 cut(s) | 33, 35 |
| BssMI | GATC | 3 cut(s) | 659, 755, 767 |
| BssNI | GRCGYC | 1 cut(s) | 562 |
| BssSI | CACGAG | 1 cut(s) | 685 |
| Bst2BI | CACGAG | 1 cut(s) | 685 |
| Bst2UI | CCWGG | 1 cut(s) | 345 |
| Bst4CI | ACNGT | 2 cut(s) | 93, 359 |
| Bst6I | CTCTTC | 2 cut(s) | 205, 503 |
| BstACI | GRCGYC | 1 cut(s) | 562 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 13 |
| BstBI | TTCGAA | 1 cut(s) | 598 |
| BstDEI | CTNAG | 3 cut(s) | 250, 398, 622 |
| BstDSI | CCRYGG | 2 cut(s) | 76, 106 |
| BstF5I | GGATG | 6 cut(s) | 122, 133, 144, 155, 424, 452 |
| BstH2I | RGCGCY | 2 cut(s) | 565, 606 |
| BstHHI | GCGC | 6 cut(s) | 35, 37, 39, 564, 605, 628 |
| BstKTI | GATC | 3 cut(s) | 662, 758, 770 |
| BstMBI | GATC | 3 cut(s) | 659, 755, 767 |
| BstMCI | CGRYCG | 1 cut(s) | 57 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 13, 267, 381, 390, 402, 411, 600, 711, 732 |
| BstNI | CCWGG | 1 cut(s) | 345 |
| BstSCI | CCNGG | 1 cut(s) | 343 |
| BstSFI | CTRYAG | 2 cut(s) | 117, 139 |
| BstSLI | GKGCMC | 1 cut(s) | 671 |
| BstV1I | GCAGC | 3 cut(s) | 131, 153, 405 |
| BstV2I | GAAGAC | 1 cut(s) | 487 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 558 |
| BsuI | GTATCC | 1 cut(s) | 665 |
| BsuRI | GGCC | 3 cut(s) | 103, 309, 550 |
| BtgI | CCRYGG | 2 cut(s) | 76, 106 |
| BtrI | CACGTC | 1 cut(s) | 350 |
| BtsCI | GGATG | 6 cut(s) | 122, 133, 144, 155, 424, 452 |
| BtsIMutI | CAGTG | 1 cut(s) | 74 |
| CfoI | GCGC | 6 cut(s) | 35, 37, 39, 564, 605, 628 |
| Cfr10I | RCCGGY | 1 cut(s) | 3 |
| Cfr13I | GGNCC | 1 cut(s) | 102 |
| Cfr42I | CCGCGG | 1 cut(s) | 79 |
| CseI | GACGC | 1 cut(s) | 600 |
| Csp6I | GTAC | 1 cut(s) | 461 |
| CviAII | CATG | 1 cut(s) | 552 |
| CviQI | GTAC | 1 cut(s) | 461 |
| DdeI | CTNAG | 3 cut(s) | 250, 398, 622 |
| DinI | GGCGCC | 1 cut(s) | 563 |
| DpnI | GATC | 3 cut(s) | 661, 757, 769 |
| DpnII | GATC | 3 cut(s) | 659, 755, 767 |
| DraIII | CACNNNGTG | 1 cut(s) | 743 |
| EaeI | YGGCCR | 1 cut(s) | 548 |
| Eam1104I | CTCTTC | 2 cut(s) | 205, 503 |
| EarI | CTCTTC | 2 cut(s) | 205, 503 |
| Ecl136II | GAGCTC | 1 cut(s) | 684 |
| Eco24I | GRGCYC | 1 cut(s) | 686 |
| Eco32I | GATATC | 2 cut(s) | 284, 304 |
| Eco53kI | GAGCTC | 1 cut(s) | 684 |
| EcoICRI | GAGCTC | 1 cut(s) | 684 |
| EcoRII | CCWGG | 1 cut(s) | 343 |
| EcoRV | GATATC | 2 cut(s) | 284, 304 |
| EcoT38I | GRGCYC | 1 cut(s) | 686 |
| EgeI | GGCGCC | 1 cut(s) | 563 |
| EheI | GGCGCC | 1 cut(s) | 563 |
| FaeI | CATG | 1 cut(s) | 555 |
| FaiI | YATR | 9 cut(s) | 327, 442, 444, 469, 471, 553, 638, 716, 742 |
| FatI | CATG | 1 cut(s) | 551 |
| FauI | CCCGC | 5 cut(s) | 83, 168, 188, 199, 230 |
| FauNDI | CATATG | 1 cut(s) | 442 |
| Fnu4HI | GCNGC | 6 cut(s) | 79, 120, 131, 142, 153, 394 |
| FokI | GGATG | 6 cut(s) | 109, 120, 131, 142, 411, 459 |
| FriOI | GRGCYC | 1 cut(s) | 686 |
| Fsp4HI | GCNGC | 6 cut(s) | 79, 120, 131, 142, 153, 394 |
| FspBI | CTAG | 3 cut(s) | 237, 340, 771 |
| GlaI | GCGC | 6 cut(s) | 34, 36, 38, 563, 604, 627 |
| GluI | GCNGC | 6 cut(s) | 79, 120, 131, 142, 153, 394 |
| GsuI | CTGGAG | 1 cut(s) | 441 |
| HaeII | RGCGCY | 2 cut(s) | 565, 606 |
| HaeIII | GGCC | 3 cut(s) | 103, 309, 550 |
| HapII | CCGG | 2 cut(s) | 4, 547 |
| HgaI | GACGC | 1 cut(s) | 600 |
| HhaI | GCGC | 6 cut(s) | 35, 37, 39, 564, 605, 628 |
| Hin1I | GRCGYC | 1 cut(s) | 562 |
| Hin1II | CATG | 1 cut(s) | 555 |
| Hin6I | GCGC | 6 cut(s) | 33, 35, 37, 562, 603, 626 |
| HinP1I | GCGC | 6 cut(s) | 33, 35, 37, 562, 603, 626 |
| HindIII | AAGCTT | 1 cut(s) | 373 |
| HinfI | GANTC | 2 cut(s) | 329, 450 |
| HpaII | CCGG | 2 cut(s) | 4, 547 |
| HphI | GGTGA | 2 cut(s) | 56, 692 |
| Hpy166II | GTNNAC | 1 cut(s) | 516 |
| Hpy188I | TCNGA | 2 cut(s) | 623, 659 |
| Hpy188III | TCNNGA | 5 cut(s) | 52, 299, 643, 687, 771 |
| Hpy8I | GTNNAC | 1 cut(s) | 516 |
| HpyAV | CCTTC | 3 cut(s) | 31, 38, 484 |
| HpyCH4III | ACNGT | 2 cut(s) | 93, 359 |
| HpyCH4IV | ACGT | 2 cut(s) | 349, 518 |
| HpyCH4V | TGCA | 4 cut(s) | 119, 141, 270, 313 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 13, 267, 381, 390, 402, 411, 600, 711, 732 |
| HpyF3I | CTNAG | 3 cut(s) | 250, 398, 622 |
| HpySE526I | ACGT | 2 cut(s) | 349, 518 |
| Hsp92I | GRCGYC | 1 cut(s) | 562 |
| Hsp92II | CATG | 1 cut(s) | 555 |
| HspAI | GCGC | 6 cut(s) | 33, 35, 37, 562, 603, 626 |
| KasI | GGCGCC | 1 cut(s) | 561 |
| KroI | GCCGGC | 1 cut(s) | 3 |
| KroNI | GCCGGC | 1 cut(s) | 5 |
| KspI | CCGCGG | 1 cut(s) | 79 |
| Kzo9I | GATC | 3 cut(s) | 659, 755, 767 |
| LmnI | GCTCC | 2 cut(s) | 460, 577 |
| Lsp1109I | GCAGC | 3 cut(s) | 131, 153, 405 |
| LweI | GCATC | 6 cut(s) | 90, 131, 142, 153, 164, 322 |
| MaeI | CTAG | 3 cut(s) | 237, 340, 771 |
| MaeII | ACGT | 2 cut(s) | 349, 518 |
| MaeIII | GTNAC | 3 cut(s) | 69, 537, 698 |
| MalI | GATC | 3 cut(s) | 661, 757, 769 |
| MauBI | CGCGCGCG | 1 cut(s) | 33 |
| MboI | GATC | 3 cut(s) | 659, 755, 767 |
| MboII | GAAGA | 7 cut(s) | 76, 192, 489, 492, 520, 702, 765 |
| MhlI | GDGCHC | 2 cut(s) | 671, 686 |
| MluCI | AATT | 1 cut(s) | 694 |
| Mly113I | GGCGCC | 1 cut(s) | 562 |
| MmeI | TCCRAC | 1 cut(s) | 299 |
| MnlI | CCTC | 9 cut(s) | 59, 136, 158, 395, 504, 524, 528, 554, 616 |
| MroNI | GCCGGC | 1 cut(s) | 3 |
| MslI | CAYNNNNRTG | 4 cut(s) | 429, 445, 556, 586 |
| MspA1I | CMGCKG | 1 cut(s) | 78 |
| MspI | CCGG | 2 cut(s) | 4, 547 |
| MspR9I | CCNGG | 1 cut(s) | 345 |
| Mva1269I | GAATGC | 1 cut(s) | 111 |
| MvaI | CCWGG | 1 cut(s) | 345 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 13, 267, 381, 390, 402, 411, 600, 711, 732 |
| NaeI | GCCGGC | 1 cut(s) | 5 |
| NarI | GGCGCC | 1 cut(s) | 562 |
| NdeI | CATATG | 1 cut(s) | 442 |
| NdeII | GATC | 3 cut(s) | 659, 755, 767 |
| NgoMIV | GCCGGC | 1 cut(s) | 3 |
| NlaIII | CATG | 1 cut(s) | 555 |
| NlaIV | GGNNCC | 4 cut(s) | 104, 504, 563, 579 |
| NmuCI | GTSAC | 2 cut(s) | 69, 698 |
| NspV | TTCGAA | 1 cut(s) | 598 |
| PauI | GCGCGC | 2 cut(s) | 33, 35 |
| PctI | GAATGC | 1 cut(s) | 111 |
| PdiI | GCCGGC | 1 cut(s) | 5 |
| PfeI | GAWTC | 2 cut(s) | 329, 450 |
| PkrI | GCNGC | 6 cut(s) | 80, 121, 132, 143, 154, 395 |
| PluTI | GGCGCC | 1 cut(s) | 565 |
| Psp124BI | GAGCTC | 1 cut(s) | 686 |
| Psp6I | CCWGG | 1 cut(s) | 343 |
| PspGI | CCWGG | 1 cut(s) | 343 |
| PspN4I | GGNNCC | 4 cut(s) | 104, 504, 563, 579 |
| PspPI | GGNCC | 1 cut(s) | 102 |
| PstI | CTGCAG | 2 cut(s) | 121, 143 |
| PteI | GCGCGC | 2 cut(s) | 33, 35 |
| RsaI | GTAC | 1 cut(s) | 462 |
| RsaNI | GTAC | 1 cut(s) | 461 |
| RseI | CAYNNNNRTG | 4 cut(s) | 429, 445, 556, 586 |
| SacI | GAGCTC | 1 cut(s) | 686 |
| SacII | CCGCGG | 1 cut(s) | 79 |
| SatI | GCNGC | 6 cut(s) | 79, 120, 131, 142, 153, 394 |
| Sau3AI | GATC | 3 cut(s) | 659, 755, 767 |
| Sau96I | GGNCC | 1 cut(s) | 102 |
| ScrFI | CCNGG | 1 cut(s) | 345 |
| SduI | GDGCHC | 2 cut(s) | 671, 686 |
| SfaNI | GCATC | 6 cut(s) | 90, 131, 142, 153, 164, 322 |
| SfcI | CTRYAG | 2 cut(s) | 117, 139 |
| SfoI | GGCGCC | 1 cut(s) | 563 |
| Sfr303I | CCGCGG | 1 cut(s) | 79 |
| SfuI | TTCGAA | 1 cut(s) | 598 |
| SgrBI | CCGCGG | 1 cut(s) | 79 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 429, 445, 556, 586 |
| SmlI | CTYRAG | 3 cut(s) | 317, 333, 370 |
| SmoI | CTYRAG | 3 cut(s) | 317, 333, 370 |
| Sse9I | AATT | 1 cut(s) | 694 |
| SspDI | GGCGCC | 1 cut(s) | 561 |
| SspMI | CTAG | 3 cut(s) | 237, 340, 771 |
| SstI | GAGCTC | 1 cut(s) | 686 |
| StyD4I | CCNGG | 1 cut(s) | 343 |
| TaaI | ACNGT | 2 cut(s) | 93, 359 |
| TaiI | ACGT | 2 cut(s) | 352, 521 |
| TaqI | TCGA | 3 cut(s) | 53, 598, 644 |
| TasI | AATT | 1 cut(s) | 694 |
| TauI | GCSGC | 3 cut(s) | 81, 133, 155 |
| TfiI | GAWTC | 2 cut(s) | 329, 450 |
| TscAI | CASTG | 1 cut(s) | 74 |
| TseFI | GTSAC | 2 cut(s) | 69, 698 |
| TseI | GCWGC | 3 cut(s) | 119, 141, 393 |
| Tsp45I | GTSAC | 2 cut(s) | 69, 698 |
| TspDTI | ATGAA | 2 cut(s) | 486, 630 |
| TspGWI | ACGGA | 1 cut(s) | 515 |
| TspRI | CASTG | 1 cut(s) | 74 |
| XbaI | TCTAGA | 1 cut(s) | 770 |
| XspI | CTAG | 3 cut(s) | 237, 340, 771 |