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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 250, 741 |
| AclWI | GGATC | 1 cut(s) | 440 |
| AcoI | YGGCCR | 1 cut(s) | 586 |
| AcsI | RAATTY | 1 cut(s) | 317 |
| AdeI | CACNNNGTG | 1 cut(s) | 781 |
| AgsI | TTSAA | 2 cut(s) | 53, 265 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 105, 129 |
| AleI | CACNNNNGTG | 1 cut(s) | 341 |
| AluBI | AGCT | 6 cut(s) | 155, 161, 451, 461, 722, 773 |
| AluI | AGCT | 6 cut(s) | 155, 161, 451, 461, 722, 773 |
| Alw21I | GWGCWC | 1 cut(s) | 724 |
| AlwI | GGATC | 1 cut(s) | 440 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 3 cut(s) | 93, 574, 586 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 317 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 294 |
| AspLEI | GCGC | 1 cut(s) | 643 |
| AspS9I | GGNCC | 1 cut(s) | 488 |
| AsuHPI | GGTGA | 1 cut(s) | 730 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 488 |
| BaeGI | GKGCMC | 1 cut(s) | 709 |
| BalI | TGGCCA | 1 cut(s) | 588 |
| BanII | GRGCYC | 1 cut(s) | 724 |
| BauI | CACGAG | 1 cut(s) | 723 |
| BbsI | GAAGAC | 1 cut(s) | 365 |
| Bbv12I | GWGCWC | 1 cut(s) | 724 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 4 cut(s) | 92, 215, 385, 627 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 404, 438 |
| BciT130I | CCWGG | 2 cut(s) | 107, 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BclI | TGATCA | 1 cut(s) | 697 |
| BfaI | CTAG | 2 cut(s) | 126, 809 |
| BfoI | RGCGCY | 1 cut(s) | 644 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 131 |
| Bme18I | GGWCC | 1 cut(s) | 488 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 488 |
| BmiI | GGNNCC | 1 cut(s) | 601 |
| BmrFI | CCNGG | 2 cut(s) | 107, 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 1 cut(s) | 365 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 414 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 231, 261 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseBI | CCWGG | 2 cut(s) | 107, 131 |
| BseCI | ATCGAT | 1 cut(s) | 414 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseMII | CTCAG | 1 cut(s) | 651 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseSI | GKGCMC | 1 cut(s) | 709 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 3 cut(s) | 95, 576, 588 |
| BshVI | ATCGAT | 1 cut(s) | 414 |
| BsiHKAI | GWGCWC | 1 cut(s) | 724 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsnI | GGCC | 3 cut(s) | 95, 576, 588 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 709, 724 |
| Bsp143I | GATC | 5 cut(s) | 333, 432, 697, 793, 805 |
| BspACI | CCGC | 2 cut(s) | 250, 741 |
| BspANI | GGCC | 3 cut(s) | 95, 576, 588 |
| BspCNI | CTCAG | 1 cut(s) | 652 |
| BspDI | ATCGAT | 1 cut(s) | 414 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 1 cut(s) | 601 |
| BspPI | GGATC | 1 cut(s) | 440 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssMI | GATC | 5 cut(s) | 333, 432, 697, 793, 805 |
| BssSI | CACGAG | 1 cut(s) | 723 |
| Bst2BI | CACGAG | 1 cut(s) | 723 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 2 cut(s) | 228, 541 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 4 cut(s) | 184, 399, 612, 660 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstH2I | RGCGCY | 1 cut(s) | 644 |
| BstHHI | GCGC | 1 cut(s) | 643 |
| BstKTI | GATC | 5 cut(s) | 336, 435, 700, 796, 808 |
| BstMBI | GATC | 5 cut(s) | 333, 432, 697, 793, 805 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 638, 749, 770 |
| BstNI | CCWGG | 2 cut(s) | 107, 131 |
| BstSCI | CCNGG | 2 cut(s) | 105, 129 |
| BstSLI | GKGCMC | 1 cut(s) | 709 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 365 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 584, 596 |
| Bsu15I | ATCGAT | 1 cut(s) | 414 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 3 cut(s) | 95, 576, 588 |
| BsuTUI | ATCGAT | 1 cut(s) | 414 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 445 |
| CfoI | GCGC | 1 cut(s) | 643 |
| Cfr13I | GGNCC | 1 cut(s) | 488 |
| ClaI | ATCGAT | 1 cut(s) | 414 |
| CseI | GACGC | 1 cut(s) | 638 |
| CviAII | CATG | 3 cut(s) | 446, 492, 590 |
| DdeI | CTNAG | 4 cut(s) | 184, 399, 612, 660 |
| DpnI | GATC | 5 cut(s) | 335, 434, 699, 795, 807 |
| DpnII | GATC | 5 cut(s) | 333, 432, 697, 793, 805 |
| DraIII | CACNNNGTG | 1 cut(s) | 781 |
| EaeI | YGGCCR | 1 cut(s) | 586 |
| Eam1104I | CTCTTC | 2 cut(s) | 228, 541 |
| EarI | CTCTTC | 2 cut(s) | 228, 541 |
| Ecl136II | GAGCTC | 1 cut(s) | 722 |
| Eco24I | GRGCYC | 1 cut(s) | 724 |
| Eco47I | GGWCC | 1 cut(s) | 488 |
| Eco53kI | GAGCTC | 1 cut(s) | 722 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 722 |
| EcoRI | GAATTC | 1 cut(s) | 317 |
| EcoRII | CCWGG | 2 cut(s) | 105, 129 |
| EcoT38I | GRGCYC | 1 cut(s) | 724 |
| FaeI | CATG | 3 cut(s) | 449, 495, 593 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 350, 382 |
| FatI | CATG | 3 cut(s) | 445, 491, 589 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FbaI | TGATCA | 1 cut(s) | 697 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| FriOI | GRGCYC | 1 cut(s) | 724 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 809 |
| GlaI | GCGC | 1 cut(s) | 642 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeII | RGCGCY | 1 cut(s) | 644 |
| HaeIII | GGCC | 3 cut(s) | 95, 576, 588 |
| HgaI | GACGC | 1 cut(s) | 638 |
| HhaI | GCGC | 1 cut(s) | 643 |
| Hin1II | CATG | 3 cut(s) | 449, 495, 593 |
| Hin6I | GCGC | 1 cut(s) | 641 |
| HinP1I | GCGC | 1 cut(s) | 641 |
| HincII | GTYRAC | 1 cut(s) | 554 |
| HindII | GTYRAC | 1 cut(s) | 554 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 102, 115, 220, 236, 361, 411, 541, 656 |
| HphI | GGTGA | 1 cut(s) | 730 |
| Hpy166II | GTNNAC | 1 cut(s) | 554 |
| Hpy188I | TCNGA | 2 cut(s) | 661, 697 |
| Hpy188III | TCNNGA | 8 cut(s) | 71, 119, 446, 681, 725, 776, 797, 809 |
| Hpy8I | GTNNAC | 1 cut(s) | 554 |
| HpyAV | CCTTC | 2 cut(s) | 382, 506 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 556 |
| HpyCH4V | TGCA | 3 cut(s) | 22, 386, 425 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 638, 749, 770 |
| HpyF3I | CTNAG | 4 cut(s) | 184, 399, 612, 660 |
| HpySE526I | ACGT | 2 cut(s) | 135, 556 |
| Hsp92II | CATG | 3 cut(s) | 449, 495, 593 |
| HspAI | GCGC | 1 cut(s) | 641 |
| Ksp22I | TGATCA | 1 cut(s) | 697 |
| Kzo9I | GATC | 5 cut(s) | 333, 432, 697, 793, 805 |
| LmnI | GCTCC | 3 cut(s) | 34, 458, 599 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 2 cut(s) | 126, 809 |
| MaeII | ACGT | 2 cut(s) | 135, 556 |
| MaeIII | GTNAC | 2 cut(s) | 5, 736 |
| MalI | GATC | 5 cut(s) | 335, 434, 699, 795, 807 |
| MboI | GATC | 5 cut(s) | 333, 432, 697, 793, 805 |
| MboII | GAAGA | 5 cut(s) | 215, 370, 558, 740, 803 |
| MhlI | GDGCHC | 2 cut(s) | 709, 724 |
| MlsI | TGGCCA | 1 cut(s) | 588 |
| MluCI | AATT | 5 cut(s) | 17, 270, 317, 496, 732 |
| MluNI | TGGCCA | 1 cut(s) | 588 |
| MlyI | GAGTC | 3 cut(s) | 214, 355, 665 |
| MnlI | CCTC | 7 cut(s) | 181, 257, 542, 562, 566, 592, 654 |
| Mox20I | TGGCCA | 1 cut(s) | 588 |
| MroXI | GAANNNNTTC | 1 cut(s) | 294 |
| MscI | TGGCCA | 1 cut(s) | 588 |
| MseI | TTAA | 2 cut(s) | 303, 311 |
| MslI | CAYNNNNRTG | 5 cut(s) | 215, 231, 341, 594, 624 |
| Msp20I | TGGCCA | 1 cut(s) | 588 |
| MspR9I | CCNGG | 2 cut(s) | 107, 131 |
| MvaI | CCWGG | 2 cut(s) | 107, 131 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 638, 749, 770 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 5 cut(s) | 333, 432, 697, 793, 805 |
| NlaIII | CATG | 3 cut(s) | 449, 495, 593 |
| NlaIV | GGNNCC | 1 cut(s) | 601 |
| NmuCI | GTSAC | 1 cut(s) | 736 |
| OliI | CACNNNNGTG | 1 cut(s) | 341 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PdmI | GAANNNNTTC | 1 cut(s) | 294 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 236, 411, 541 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 214, 355, 664 |
| PpsI | GAGTC | 3 cut(s) | 214, 355, 664 |
| Psp124BI | GAGCTC | 1 cut(s) | 724 |
| Psp6I | CCWGG | 2 cut(s) | 105, 129 |
| PspGI | CCWGG | 2 cut(s) | 105, 129 |
| PspN4I | GGNNCC | 1 cut(s) | 601 |
| PspPI | GGNCC | 1 cut(s) | 488 |
| RseI | CAYNNNNRTG | 5 cut(s) | 215, 231, 341, 594, 624 |
| SacI | GAGCTC | 1 cut(s) | 724 |
| SaqAI | TTAA | 2 cut(s) | 303, 311 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 5 cut(s) | 333, 432, 697, 793, 805 |
| Sau96I | GGNCC | 1 cut(s) | 488 |
| SchI | GAGTC | 3 cut(s) | 214, 355, 665 |
| ScrFI | CCNGG | 2 cut(s) | 107, 131 |
| SduI | GDGCHC | 2 cut(s) | 709, 724 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 488 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 215, 231, 341, 594, 624 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 5 cut(s) | 17, 270, 317, 496, 732 |
| SsiI | CCGC | 2 cut(s) | 250, 741 |
| SspMI | CTAG | 2 cut(s) | 126, 809 |
| SstI | GAGCTC | 1 cut(s) | 724 |
| StyD4I | CCNGG | 2 cut(s) | 105, 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 559 |
| TaqI | TCGA | 5 cut(s) | 120, 409, 414, 544, 682 |
| TasI | AATT | 5 cut(s) | 17, 270, 317, 496, 732 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 236, 411, 541 |
| Tru1I | TTAA | 2 cut(s) | 303, 311 |
| Tru9I | TTAA | 2 cut(s) | 303, 311 |
| TseFI | GTSAC | 1 cut(s) | 736 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 736 |
| TspDTI | ATGAA | 3 cut(s) | 215, 434, 479 |
| TspGWI | ACGGA | 2 cut(s) | 445, 553 |
| VpaK11BI | GGWCC | 1 cut(s) | 488 |
| XapI | RAATTY | 1 cut(s) | 317 |
| XbaI | TCTAGA | 1 cut(s) | 808 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 294 |
| XspI | CTAG | 2 cut(s) | 126, 809 |