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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 807, 852 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 915 |
| AatII | GACGTC | 1 cut(s) | 416 |
| AccB1I | GGYRCC | 2 cut(s) | 1028, 1049 |
| AccBSI | CCGCTC | 1 cut(s) | 880 |
| AccII | CGCG | 2 cut(s) | 302, 304 |
| AciI | CCGC | 4 cut(s) | 111, 239, 880, 962 |
| AclWI | GGATC | 2 cut(s) | 12, 740 |
| AcsI | RAATTY | 1 cut(s) | 191 |
| AcvI | CACGTG | 2 cut(s) | 971, 989 |
| AcyI | GRCGYC | 2 cut(s) | 413, 1029 |
| AdeI | CACNNNGTG | 1 cut(s) | 974 |
| AfaI | GTAC | 2 cut(s) | 116, 712 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 28, 34, 76, 866, 867, 990, 1019, 1063 |
| AflIII | ACRYGT | 3 cut(s) | 159, 968, 986 |
| AgsI | TTSAA | 5 cut(s) | 335, 529, 536, 565, 813 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 632 |
| AjnI | CCWGG | 1 cut(s) | 1012 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 477, 509 |
| AleI | CACNNNNGTG | 1 cut(s) | 303 |
| AluBI | AGCT | 6 cut(s) | 181, 392, 469, 593, 649, 751 |
| AluI | AGCT | 6 cut(s) | 181, 392, 469, 593, 649, 751 |
| Alw21I | GWGCWC | 2 cut(s) | 215, 492 |
| Alw26I | GTCTC | 1 cut(s) | 404 |
| Alw44I | GTGCAC | 1 cut(s) | 211 |
| AlwI | GGATC | 2 cut(s) | 12, 740 |
| AoxI | GGCC | 2 cut(s) | 36, 815 |
| ApaLI | GTGCAC | 1 cut(s) | 211 |
| ApeKI | GCWGC | 8 cut(s) | 181, 184, 203, 222, 235, 254, 270, 273 |
| ApoI | RAATTY | 1 cut(s) | 191 |
| AspA2I | CCTAGG | 1 cut(s) | 1061 |
| AspLEI | GCGC | 4 cut(s) | 304, 552, 873, 1031 |
| AspS9I | GGNCC | 4 cut(s) | 36, 816, 882, 917 |
| AsuC2I | CCSGG | 1 cut(s) | 29 |
| AvaII | GGWCC | 2 cut(s) | 882, 917 |
| AvrII | CCTAGG | 1 cut(s) | 1061 |
| BaeGI | GKGCMC | 1 cut(s) | 215 |
| BanI | GGYRCC | 2 cut(s) | 1028, 1049 |
| BauI | CACGAG | 2 cut(s) | 794, 1038 |
| BbrPI | CACGTG | 2 cut(s) | 971, 989 |
| Bbv12I | GWGCWC | 2 cut(s) | 215, 492 |
| BbvI | GCAGC | 8 cut(s) | 168, 190, 196, 209, 222, 241, 257, 260 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 704, 738 |
| BciT130I | CCWGG | 1 cut(s) | 1014 |
| BciVI | GTATCC | 2 cut(s) | 958, 1019 |
| BcnI | CCSGG | 1 cut(s) | 29 |
| BcoDI | GTCTC | 1 cut(s) | 404 |
| BfaI | CTAG | 3 cut(s) | 344, 482, 1062 |
| BfmI | CTRYAG | 2 cut(s) | 182, 768 |
| BfoI | RGCGCY | 1 cut(s) | 1032 |
| BfuI | GTATCC | 2 cut(s) | 958, 1019 |
| BisI | GCNGC | 9 cut(s) | 182, 185, 204, 223, 236, 239, 255, 271, 274 |
| BlnI | CCTAGG | 1 cut(s) | 1061 |
| BlsI | GCNGC | 9 cut(s) | 183, 186, 205, 224, 237, 240, 256, 272, 275 |
| Bme1390I | CCNGG | 2 cut(s) | 29, 1014 |
| Bme18I | GGWCC | 2 cut(s) | 882, 917 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 632 |
| BmgT120I | GGNCC | 4 cut(s) | 36, 816, 882, 917 |
| BmiI | GGNNCC | 4 cut(s) | 884, 918, 1030, 1051 |
| BmrFI | CCNGG | 2 cut(s) | 29, 1014 |
| BmsI | GCATC | 1 cut(s) | 448 |
| BpmI | CTGGAG | 1 cut(s) | 747 |
| BpuEI | CTTGAG | 1 cut(s) | 296 |
| BpuMI | CCSGG | 1 cut(s) | 29 |
| BsaAI | YACGTR | 2 cut(s) | 971, 989 |
| BsaHI | GRCGYC | 2 cut(s) | 413, 1029 |
| BsaJI | CCNNGG | 4 cut(s) | 714, 1012, 1032, 1061 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 98, 128, 276, 306, 985, 991, 1015, 1021 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 28, 34, 76, 866, 867, 990, 1019, 1063 |
| Bse3DI | GCAATG | 1 cut(s) | 505 |
| BseBI | CCWGG | 1 cut(s) | 1014 |
| BseDI | CCNNGG | 4 cut(s) | 714, 1012, 1032, 1061 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 28, 34, 76, 866, 867, 990, 1019, 1063 |
| BseMI | GCAATG | 1 cut(s) | 505 |
| BseRI | GAGGAG | 2 cut(s) | 78, 506 |
| BseSI | GKGCMC | 1 cut(s) | 215 |
| BseXI | GCAGC | 8 cut(s) | 168, 190, 196, 209, 222, 241, 257, 260 |
| BsgI | GTGCAG | 1 cut(s) | 30 |
| Bsh1236I | CGCG | 2 cut(s) | 302, 304 |
| BshFI | GGCC | 2 cut(s) | 38, 817 |
| BshNI | GGYRCC | 2 cut(s) | 1028, 1049 |
| BsiHKAI | GWGCWC | 2 cut(s) | 215, 492 |
| BsiSI | CCGG | 1 cut(s) | 29 |
| BslFI | GGGAC | 2 cut(s) | 912, 921 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 28, 34, 76, 866, 867, 990, 1019, 1063 |
| BsmAI | GTCTC | 1 cut(s) | 404 |
| BsmBI | CGTCTC | 1 cut(s) | 404 |
| BsmFI | GGGAC | 2 cut(s) | 912, 921 |
| BsmI | GAATGC | 2 cut(s) | 81, 1073 |
| BsnI | GGCC | 2 cut(s) | 38, 817 |
| Bsp1286I | GDGCHC | 2 cut(s) | 215, 492 |
| Bsp143I | GATC | 3 cut(s) | 4, 450, 732 |
| Bsp19I | CCATGG | 1 cut(s) | 1032 |
| BspACI | CCGC | 4 cut(s) | 111, 239, 880, 962 |
| BspANI | GGCC | 2 cut(s) | 38, 817 |
| BspFNI | CGCG | 2 cut(s) | 302, 304 |
| BspHI | TCATGA | 3 cut(s) | 327, 735, 838 |
| BspLI | GGNNCC | 4 cut(s) | 884, 918, 1030, 1051 |
| BspMAI | CTGCAG | 1 cut(s) | 186 |
| BspPI | GGATC | 2 cut(s) | 12, 740 |
| BspQI | GCTCTTC | 1 cut(s) | 480 |
| BspT107I | GGYRCC | 2 cut(s) | 1028, 1049 |
| BsrBI | CCGCTC | 1 cut(s) | 880 |
| BsrDI | GCAATG | 1 cut(s) | 505 |
| BssECI | CCNNGG | 4 cut(s) | 714, 1012, 1032, 1061 |
| BssMI | GATC | 3 cut(s) | 4, 450, 732 |
| BssNI | GRCGYC | 2 cut(s) | 413, 1029 |
| BssSI | CACGAG | 2 cut(s) | 794, 1038 |
| BssT1I | CCWWGG | 2 cut(s) | 1032, 1061 |
| Bst2BI | CACGAG | 2 cut(s) | 794, 1038 |
| Bst2UI | CCWGG | 1 cut(s) | 1014 |
| Bst4CI | ACNGT | 1 cut(s) | 950 |
| Bst6I | CTCTTC | 1 cut(s) | 480 |
| BstACI | GRCGYC | 2 cut(s) | 413, 1029 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 219 |
| BstBAI | YACGTR | 2 cut(s) | 971, 989 |
| BstC8I | GCNNGC | 1 cut(s) | 394 |
| BstDEI | CTNAG | 2 cut(s) | 828, 888 |
| BstDSI | CCRYGG | 1 cut(s) | 1032 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 74 |
| BstFNI | CGCG | 2 cut(s) | 302, 304 |
| BstH2I | RGCGCY | 1 cut(s) | 1032 |
| BstHHI | GCGC | 4 cut(s) | 304, 552, 873, 1031 |
| BstKTI | GATC | 3 cut(s) | 7, 453, 735 |
| BstMAI | GTCTC | 1 cut(s) | 404 |
| BstMBI | GATC | 3 cut(s) | 4, 450, 732 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 219, 487, 877 |
| BstNI | CCWGG | 1 cut(s) | 1014 |
| BstNSI | RCATGY | 2 cut(s) | 163, 1082 |
| BstSCI | CCNGG | 2 cut(s) | 27, 1012 |
| BstSFI | CTRYAG | 2 cut(s) | 182, 768 |
| BstSLI | GKGCMC | 1 cut(s) | 215 |
| BstUI | CGCG | 2 cut(s) | 302, 304 |
| BstV1I | GCAGC | 8 cut(s) | 168, 190, 196, 209, 222, 241, 257, 260 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 46 |
| BsuI | GTATCC | 2 cut(s) | 958, 1019 |
| BsuRI | GGCC | 2 cut(s) | 38, 817 |
| BtgI | CCRYGG | 1 cut(s) | 1032 |
| BtsI | GCAGTG | 1 cut(s) | 1024 |
| BtsIMutI | CAGTG | 1 cut(s) | 1024 |
| Cac8I | GCNNGC | 1 cut(s) | 394 |
| CciI | TCATGA | 3 cut(s) | 327, 735, 838 |
| CfoI | GCGC | 4 cut(s) | 304, 552, 873, 1031 |
| Cfr13I | GGNCC | 4 cut(s) | 36, 816, 882, 917 |
| Csp6I | GTAC | 2 cut(s) | 115, 711 |
| CviQI | GTAC | 2 cut(s) | 115, 711 |
| DdeI | CTNAG | 2 cut(s) | 828, 888 |
| DinI | GGCGCC | 1 cut(s) | 1030 |
| DpnI | GATC | 3 cut(s) | 6, 452, 734 |
| DpnII | GATC | 3 cut(s) | 4, 450, 732 |
| DraIII | CACNNNGTG | 1 cut(s) | 974 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 915 |
| DriI | GACNNNNNGTC | 1 cut(s) | 632 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 915 |
| Eam1104I | CTCTTC | 1 cut(s) | 480 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 632 |
| EarI | CTCTTC | 1 cut(s) | 480 |
| Eco130I | CCWWGG | 2 cut(s) | 1032, 1061 |
| Eco32I | GATATC | 2 cut(s) | 58, 142 |
| Eco47I | GGWCC | 2 cut(s) | 882, 917 |
| Eco72I | CACGTG | 2 cut(s) | 971, 989 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 74 |
| EcoRII | CCWGG | 1 cut(s) | 1012 |
| EcoRV | GATATC | 2 cut(s) | 58, 142 |
| EcoT14I | CCWWGG | 2 cut(s) | 1032, 1061 |
| EcoT22I | ATGCAT | 1 cut(s) | 1084 |
| EgeI | GGCGCC | 1 cut(s) | 1030 |
| EheI | GGCGCC | 1 cut(s) | 1030 |
| ErhI | CCWWGG | 2 cut(s) | 1032, 1061 |
| Esp3I | CGTCTC | 1 cut(s) | 404 |
| FaqI | GGGAC | 2 cut(s) | 912, 921 |
| FauI | CCCGC | 1 cut(s) | 104 |
| FauNDI | CATATG | 1 cut(s) | 418 |
| Fnu4HI | GCNGC | 9 cut(s) | 182, 185, 204, 223, 236, 239, 255, 271, 274 |
| Fsp4HI | GCNGC | 9 cut(s) | 182, 185, 204, 223, 236, 239, 255, 271, 274 |
| FspBI | CTAG | 3 cut(s) | 344, 482, 1062 |
| GlaI | GCGC | 4 cut(s) | 303, 551, 872, 1030 |
| GluI | GCNGC | 9 cut(s) | 182, 185, 204, 223, 236, 239, 255, 271, 274 |
| GsuI | CTGGAG | 1 cut(s) | 747 |
| HaeII | RGCGCY | 1 cut(s) | 1032 |
| HaeIII | GGCC | 2 cut(s) | 38, 817 |
| HapII | CCGG | 1 cut(s) | 29 |
| HhaI | GCGC | 4 cut(s) | 304, 552, 873, 1031 |
| Hin1I | GRCGYC | 2 cut(s) | 413, 1029 |
| Hin6I | GCGC | 4 cut(s) | 302, 550, 871, 1029 |
| HinP1I | GCGC | 4 cut(s) | 302, 550, 871, 1029 |
| HinfI | GANTC | 6 cut(s) | 14, 331, 347, 367, 509, 1000 |
| HpaII | CCGG | 1 cut(s) | 29 |
| Hpy166II | GTNNAC | 2 cut(s) | 213, 626 |
| Hpy188I | TCNGA | 2 cut(s) | 381, 589 |
| Hpy188III | TCNNGA | 5 cut(s) | 328, 404, 736, 796, 839 |
| Hpy8I | GTNNAC | 2 cut(s) | 213, 626 |
| HpyAV | CCTTC | 4 cut(s) | 183, 523, 682, 1067 |
| HpyCH4III | ACNGT | 1 cut(s) | 950 |
| HpyCH4IV | ACGT | 4 cut(s) | 413, 910, 970, 988 |
| HpyCH4V | TGCA | 7 cut(s) | 11, 99, 184, 213, 461, 857, 1082 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 219, 487, 877 |
| HpyF3I | CTNAG | 2 cut(s) | 828, 888 |
| HpySE526I | ACGT | 4 cut(s) | 413, 910, 970, 988 |
| Hsp92I | GRCGYC | 2 cut(s) | 413, 1029 |
| HspAI | GCGC | 4 cut(s) | 302, 550, 871, 1029 |
| KasI | GGCGCC | 1 cut(s) | 1028 |
| Kzo9I | GATC | 3 cut(s) | 4, 450, 732 |
| LguI | GCTCTTC | 1 cut(s) | 480 |
| LmnI | GCTCC | 2 cut(s) | 297, 877 |
| LpnPI | CCDG | 7 cut(s) | 42, 221, 359, 378, 711, 999, 1026 |
| Lsp1109I | GCAGC | 8 cut(s) | 168, 190, 196, 209, 222, 241, 257, 260 |
| LweI | GCATC | 1 cut(s) | 448 |
| MaeI | CTAG | 3 cut(s) | 344, 482, 1062 |
| MaeII | ACGT | 4 cut(s) | 413, 910, 970, 988 |
| MaeIII | GTNAC | 1 cut(s) | 634 |
| MalI | GATC | 3 cut(s) | 6, 452, 734 |
| MbiI | CCGCTC | 1 cut(s) | 880 |
| MboI | GATC | 3 cut(s) | 4, 450, 732 |
| MboII | GAAGA | 2 cut(s) | 497, 953 |
| MfeI | CAATTG | 1 cut(s) | 262 |
| MhlI | GDGCHC | 2 cut(s) | 215, 492 |
| MluCI | AATT | 8 cut(s) | 191, 262, 435, 583, 651, 802, 808, 847 |
| Mly113I | GGCGCC | 1 cut(s) | 1029 |
| MlyI | GAGTC | 3 cut(s) | 341, 361, 1009 |
| MmeI | TCCRAC | 1 cut(s) | 319 |
| Mph1103I | ATGCAT | 1 cut(s) | 1084 |
| MseI | TTAA | 1 cut(s) | 933 |
| MslI | CAYNNNNRTG | 2 cut(s) | 303, 794 |
| MspI | CCGG | 1 cut(s) | 29 |
| MspR9I | CCNGG | 2 cut(s) | 29, 1014 |
| MunI | CAATTG | 1 cut(s) | 262 |
| Mva1269I | GAATGC | 2 cut(s) | 81, 1073 |
| MvaI | CCWGG | 1 cut(s) | 1014 |
| MvnI | CGCG | 2 cut(s) | 302, 304 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 219, 487, 877 |
| NarI | GGCGCC | 1 cut(s) | 1029 |
| NciI | CCSGG | 1 cut(s) | 29 |
| NcoI | CCATGG | 1 cut(s) | 1032 |
| NdeI | CATATG | 1 cut(s) | 418 |
| NdeII | GATC | 3 cut(s) | 4, 450, 732 |
| NlaIV | GGNNCC | 4 cut(s) | 884, 918, 1030, 1051 |
| NmuCI | GTSAC | 1 cut(s) | 634 |
| NsiI | ATGCAT | 1 cut(s) | 1084 |
| NspI | RCATGY | 2 cut(s) | 163, 1082 |
| OliI | CACNNNNGTG | 1 cut(s) | 303 |
| PagI | TCATGA | 3 cut(s) | 327, 735, 838 |
| PciI | ACATGT | 1 cut(s) | 159 |
| PciSI | GCTCTTC | 1 cut(s) | 480 |
| PctI | GAATGC | 2 cut(s) | 81, 1073 |
| PfeI | GAWTC | 3 cut(s) | 14, 331, 509 |
| PfoI | TCCNGGA | 1 cut(s) | 27 |
| PkrI | GCNGC | 9 cut(s) | 183, 186, 205, 224, 237, 240, 256, 272, 275 |
| PleI | GAGTC | 3 cut(s) | 341, 361, 1008 |
| PluTI | GGCGCC | 1 cut(s) | 1032 |
| PmaCI | CACGTG | 2 cut(s) | 971, 989 |
| PmlI | CACGTG | 2 cut(s) | 971, 989 |
| PpsI | GAGTC | 3 cut(s) | 341, 361, 1008 |
| Ppu21I | YACGTR | 2 cut(s) | 971, 989 |
| PscI | ACATGT | 1 cut(s) | 159 |
| PsiI | TTATAA | 2 cut(s) | 807, 852 |
| Psp6I | CCWGG | 1 cut(s) | 1012 |
| PspCI | CACGTG | 2 cut(s) | 971, 989 |
| PspGI | CCWGG | 1 cut(s) | 1012 |
| PspN4I | GGNNCC | 4 cut(s) | 884, 918, 1030, 1051 |
| PspPI | GGNCC | 4 cut(s) | 36, 816, 882, 917 |
| PstI | CTGCAG | 1 cut(s) | 186 |
| RsaI | GTAC | 2 cut(s) | 116, 712 |
| RsaNI | GTAC | 2 cut(s) | 115, 711 |
| RseI | CAYNNNNRTG | 2 cut(s) | 303, 794 |
| SapI | GCTCTTC | 1 cut(s) | 480 |
| SaqAI | TTAA | 1 cut(s) | 933 |
| SatI | GCNGC | 9 cut(s) | 182, 185, 204, 223, 236, 239, 255, 271, 274 |
| Sau3AI | GATC | 3 cut(s) | 4, 450, 732 |
| Sau96I | GGNCC | 4 cut(s) | 36, 816, 882, 917 |
| SchI | GAGTC | 3 cut(s) | 341, 361, 1009 |
| ScrFI | CCNGG | 2 cut(s) | 29, 1014 |
| SduI | GDGCHC | 2 cut(s) | 215, 492 |
| SfaNI | GCATC | 1 cut(s) | 448 |
| SfcI | CTRYAG | 2 cut(s) | 182, 768 |
| SfoI | GGCGCC | 1 cut(s) | 1030 |
| SinI | GGWCC | 2 cut(s) | 882, 917 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 303, 794 |
| SmlI | CTYRAG | 1 cut(s) | 311 |
| SmoI | CTYRAG | 1 cut(s) | 311 |
| Sse9I | AATT | 8 cut(s) | 191, 262, 435, 583, 651, 802, 808, 847 |
| SsiI | CCGC | 4 cut(s) | 111, 239, 880, 962 |
| SspDI | GGCGCC | 1 cut(s) | 1028 |
| SspI | AATATT | 1 cut(s) | 707 |
| SspMI | CTAG | 3 cut(s) | 344, 482, 1062 |
| StyD4I | CCNGG | 2 cut(s) | 27, 1012 |
| StyI | CCWWGG | 2 cut(s) | 1032, 1061 |
| TaaI | ACNGT | 1 cut(s) | 950 |
| TaiI | ACGT | 4 cut(s) | 416, 913, 973, 991 |
| TaqI | TCGA | 1 cut(s) | 350 |
| TasI | AATT | 8 cut(s) | 191, 262, 435, 583, 651, 802, 808, 847 |
| TauI | GCSGC | 1 cut(s) | 241 |
| TfiI | GAWTC | 3 cut(s) | 14, 331, 509 |
| Tru1I | TTAA | 1 cut(s) | 933 |
| Tru9I | TTAA | 1 cut(s) | 933 |
| TscAI | CASTG | 1 cut(s) | 1024 |
| TseFI | GTSAC | 1 cut(s) | 634 |
| TseI | GCWGC | 8 cut(s) | 181, 184, 203, 222, 235, 254, 270, 273 |
| Tsp45I | GTSAC | 1 cut(s) | 634 |
| TspDTI | ATGAA | 2 cut(s) | 734, 827 |
| TspRI | CASTG | 1 cut(s) | 1024 |
| VneI | GTGCAC | 1 cut(s) | 211 |
| VpaK11BI | GGWCC | 2 cut(s) | 882, 917 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 74 |
| XapI | RAATTY | 1 cut(s) | 191 |
| XceI | RCATGY | 2 cut(s) | 163, 1082 |
| XmaJI | CCTAGG | 1 cut(s) | 1061 |
| XspI | CTAG | 3 cut(s) | 344, 482, 1062 |
| ZraI | GACGTC | 1 cut(s) | 414 |
| Zsp2I | ATGCAT | 1 cut(s) | 1084 |