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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 215 |
| AccB1I | GGYRCC | 1 cut(s) | 704 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 887 |
| AccII | CGCG | 2 cut(s) | 42, 795 |
| AciI | CCGC | 1 cut(s) | 496 |
| AclWI | GGATC | 4 cut(s) | 52, 232, 244, 245 |
| AcoI | YGGCCR | 1 cut(s) | 108 |
| AcsI | RAATTY | 1 cut(s) | 563 |
| AfaI | GTAC | 2 cut(s) | 247, 519 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 199, 887 |
| AflII | CTTAAG | 1 cut(s) | 224 |
| AgsI | TTSAA | 4 cut(s) | 132, 302, 511, 868 |
| AjiI | CACGTC | 1 cut(s) | 271 |
| AluBI | AGCT | 6 cut(s) | 70, 159, 290, 314, 697, 719 |
| AluI | AGCT | 6 cut(s) | 70, 159, 290, 314, 697, 719 |
| Alw26I | GTCTC | 2 cut(s) | 631, 800 |
| AlwI | GGATC | 4 cut(s) | 52, 232, 244, 245 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 73, 887 |
| Ama87I | CYCGRG | 1 cut(s) | 428 |
| AoxI | GGCC | 1 cut(s) | 108 |
| ApeKI | GCWGC | 5 cut(s) | 34, 76, 290, 293, 433 |
| ApoI | RAATTY | 1 cut(s) | 563 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 540 |
| AspLEI | GCGC | 2 cut(s) | 6, 216 |
| AsuHPI | GGTGA | 1 cut(s) | 490 |
| AvaI | CYCGRG | 1 cut(s) | 428 |
| BalI | TGGCCA | 1 cut(s) | 110 |
| BamHI | GGATCC | 1 cut(s) | 237 |
| BanI | GGYRCC | 1 cut(s) | 704 |
| BbsI | GAAGAC | 2 cut(s) | 408, 867 |
| BbvI | GCAGC | 5 cut(s) | 21, 88, 277, 280, 445 |
| BccI | CCATC | 6 cut(s) | 227, 350, 477, 553, 631, 830 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 12, 32, 46, 66 |
| BciVI | GTATCC | 1 cut(s) | 182 |
| BclI | TGATCA | 1 cut(s) | 597 |
| BcoDI | GTCTC | 2 cut(s) | 631, 800 |
| BfaI | CTAG | 1 cut(s) | 672 |
| BfmI | CTRYAG | 4 cut(s) | 21, 51, 74, 170 |
| BfrI | CTTAAG | 1 cut(s) | 224 |
| BfuI | GTATCC | 1 cut(s) | 182 |
| BglII | AGATCT | 1 cut(s) | 686 |
| BisI | GCNGC | 5 cut(s) | 35, 77, 291, 294, 434 |
| BlsI | GCNGC | 5 cut(s) | 36, 78, 292, 295, 435 |
| BmeT110I | CYCGRG | 1 cut(s) | 428 |
| BmgBI | CACGTC | 1 cut(s) | 271 |
| BmiI | GGNNCC | 2 cut(s) | 239, 706 |
| BmsI | GCATC | 2 cut(s) | 88, 229 |
| BpiI | GAAGAC | 2 cut(s) | 408, 867 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 148, 180 |
| BsaBI | GATNNNNATC | 3 cut(s) | 596, 840, 846 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 199, 887 |
| Bse1I | ACTGG | 1 cut(s) | 892 |
| Bse8I | GATNNNNATC | 3 cut(s) | 596, 840, 846 |
| BseGI | GGATG | 5 cut(s) | 45, 79, 141, 447, 758 |
| BseJI | GATNNNNATC | 3 cut(s) | 596, 840, 846 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 199, 887 |
| BseMII | CTCAG | 1 cut(s) | 233 |
| BseNI | ACTGG | 1 cut(s) | 892 |
| BseRI | GAGGAG | 1 cut(s) | 270 |
| BseXI | GCAGC | 5 cut(s) | 21, 88, 277, 280, 445 |
| BsgI | GTGCAG | 1 cut(s) | 70 |
| Bsh1236I | CGCG | 2 cut(s) | 42, 795 |
| BshFI | GGCC | 1 cut(s) | 110 |
| BshNI | GGYRCC | 1 cut(s) | 704 |
| BsiHKCI | CYCGRG | 1 cut(s) | 428 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 199, 887 |
| BsmAI | GTCTC | 2 cut(s) | 631, 800 |
| BsmBI | CGTCTC | 1 cut(s) | 631 |
| BsnI | GGCC | 1 cut(s) | 110 |
| BsoBI | CYCGRG | 1 cut(s) | 428 |
| Bsp143I | GATC | 8 cut(s) | 57, 237, 249, 597, 686, 829, 841, 847 |
| Bsp68I | TCGCGA | 2 cut(s) | 42, 795 |
| BspACI | CCGC | 1 cut(s) | 496 |
| BspANI | GGCC | 1 cut(s) | 110 |
| BspCNI | CTCAG | 1 cut(s) | 234 |
| BspFNI | CGCG | 2 cut(s) | 42, 795 |
| BspHI | TCATGA | 2 cut(s) | 351, 691 |
| BspLI | GGNNCC | 2 cut(s) | 239, 706 |
| BspMAI | CTGCAG | 3 cut(s) | 25, 55, 78 |
| BspPI | GGATC | 4 cut(s) | 52, 232, 244, 245 |
| BspT107I | GGYRCC | 1 cut(s) | 704 |
| BspTI | CTTAAG | 1 cut(s) | 224 |
| BsrI | ACTGG | 1 cut(s) | 892 |
| BssMI | GATC | 8 cut(s) | 57, 237, 249, 597, 686, 829, 841, 847 |
| BstAFI | CTTAAG | 1 cut(s) | 224 |
| BstC8I | GCNNGC | 1 cut(s) | 218 |
| BstDEI | CTNAG | 3 cut(s) | 242, 472, 851 |
| BstF5I | GGATG | 5 cut(s) | 45, 79, 141, 447, 758 |
| BstFNI | CGCG | 2 cut(s) | 42, 795 |
| BstHHI | GCGC | 2 cut(s) | 6, 216 |
| BstKTI | GATC | 8 cut(s) | 60, 240, 252, 600, 689, 832, 844, 850 |
| BstMAI | GTCTC | 2 cut(s) | 631, 800 |
| BstMBI | GATC | 8 cut(s) | 57, 237, 249, 597, 686, 829, 841, 847 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 76, 302, 311, 332 |
| BstNSI | RCATGY | 1 cut(s) | 753 |
| BstSFI | CTRYAG | 4 cut(s) | 21, 51, 74, 170 |
| BstUI | CGCG | 2 cut(s) | 42, 795 |
| BstV1I | GCAGC | 5 cut(s) | 21, 88, 277, 280, 445 |
| BstV2I | GAAGAC | 2 cut(s) | 408, 867 |
| BstX2I | RGATCY | 2 cut(s) | 237, 686 |
| BstYI | RGATCY | 2 cut(s) | 237, 686 |
| BsuI | GTATCC | 1 cut(s) | 182 |
| BsuRI | GGCC | 1 cut(s) | 110 |
| BtrI | CACGTC | 1 cut(s) | 271 |
| BtsCI | GGATG | 5 cut(s) | 45, 79, 141, 447, 758 |
| BtsI | GCAGTG | 1 cut(s) | 60 |
| BtsIMutI | CAGTG | 2 cut(s) | 60, 582 |
| BtuMI | TCGCGA | 2 cut(s) | 42, 795 |
| Cac8I | GCNNGC | 1 cut(s) | 218 |
| CaiI | CAGNNNCTG | 2 cut(s) | 73, 887 |
| CciI | TCATGA | 2 cut(s) | 351, 691 |
| CfoI | GCGC | 2 cut(s) | 6, 216 |
| CseI | GACGC | 2 cut(s) | 380, 785 |
| Csp6I | GTAC | 2 cut(s) | 246, 518 |
| CviAII | CATG | 7 cut(s) | 352, 364, 452, 692, 709, 750, 817 |
| CviQI | GTAC | 2 cut(s) | 246, 518 |
| DdeI | CTNAG | 3 cut(s) | 242, 472, 851 |
| DpnI | GATC | 8 cut(s) | 59, 239, 251, 599, 688, 831, 843, 849 |
| DpnII | GATC | 8 cut(s) | 57, 237, 249, 597, 686, 829, 841, 847 |
| EaeI | YGGCCR | 1 cut(s) | 108 |
| Eco88I | CYCGRG | 1 cut(s) | 428 |
| EcoRI | GAATTC | 1 cut(s) | 563 |
| Esp3I | CGTCTC | 1 cut(s) | 631 |
| FaeI | CATG | 7 cut(s) | 355, 367, 455, 695, 712, 753, 820 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 143, 175 |
| FatI | CATG | 7 cut(s) | 351, 363, 451, 691, 708, 749, 816 |
| FbaI | TGATCA | 1 cut(s) | 597 |
| Fnu4HI | GCNGC | 5 cut(s) | 35, 77, 291, 294, 434 |
| FokI | GGATG | 5 cut(s) | 32, 66, 148, 434, 745 |
| Fsp4HI | GCNGC | 5 cut(s) | 35, 77, 291, 294, 434 |
| FspBI | CTAG | 1 cut(s) | 672 |
| FspI | TGCGCA | 1 cut(s) | 215 |
| GlaI | GCGC | 2 cut(s) | 5, 215 |
| GluI | GCNGC | 5 cut(s) | 35, 77, 291, 294, 434 |
| HaeIII | GGCC | 1 cut(s) | 110 |
| HgaI | GACGC | 2 cut(s) | 380, 785 |
| HhaI | GCGC | 2 cut(s) | 6, 216 |
| Hin1II | CATG | 7 cut(s) | 355, 367, 455, 695, 712, 753, 820 |
| Hin6I | GCGC | 2 cut(s) | 4, 214 |
| HinP1I | GCGC | 2 cut(s) | 4, 214 |
| HinfI | GANTC | 4 cut(s) | 26, 117, 455, 871 |
| HphI | GGTGA | 1 cut(s) | 490 |
| Hpy166II | GTNNAC | 1 cut(s) | 572 |
| Hpy188I | TCNGA | 3 cut(s) | 122, 535, 657 |
| Hpy8I | GTNNAC | 1 cut(s) | 572 |
| HpyAV | CCTTC | 1 cut(s) | 628 |
| HpyCH4IV | ACGT | 2 cut(s) | 270, 714 |
| HpyCH4V | TGCA | 6 cut(s) | 23, 53, 76, 87, 632, 773 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 76, 302, 311, 332 |
| HpyF3I | CTNAG | 3 cut(s) | 242, 472, 851 |
| HpySE526I | ACGT | 2 cut(s) | 270, 714 |
| Hsp92II | CATG | 7 cut(s) | 355, 367, 455, 695, 712, 753, 820 |
| HspAI | GCGC | 2 cut(s) | 4, 214 |
| Ksp22I | TGATCA | 1 cut(s) | 597 |
| Kzo9I | GATC | 8 cut(s) | 57, 237, 249, 597, 686, 829, 841, 847 |
| LmnI | GCTCC | 1 cut(s) | 75 |
| Lsp1109I | GCAGC | 5 cut(s) | 21, 88, 277, 280, 445 |
| LweI | GCATC | 2 cut(s) | 88, 229 |
| MaeI | CTAG | 1 cut(s) | 672 |
| MaeII | ACGT | 2 cut(s) | 270, 714 |
| MaeIII | GTNAC | 2 cut(s) | 140, 443 |
| MalI | GATC | 8 cut(s) | 59, 239, 251, 599, 688, 831, 843, 849 |
| MboI | GATC | 8 cut(s) | 57, 237, 249, 597, 686, 829, 841, 847 |
| MboII | GAAGA | 3 cut(s) | 413, 839, 872 |
| MflI | RGATCY | 2 cut(s) | 237, 686 |
| MlsI | TGGCCA | 1 cut(s) | 110 |
| MluCI | AATT | 3 cut(s) | 529, 563, 699 |
| MluNI | TGGCCA | 1 cut(s) | 110 |
| MmeI | TCCRAC | 1 cut(s) | 145 |
| MnlI | CCTC | 9 cut(s) | 40, 48, 72, 291, 316, 391, 469, 503, 780 |
| Mox20I | TGGCCA | 1 cut(s) | 110 |
| MroXI | GAANNNNTTC | 1 cut(s) | 540 |
| MscI | TGGCCA | 1 cut(s) | 110 |
| MseI | TTAA | 2 cut(s) | 225, 901 |
| MslI | CAYNNNNRTG | 2 cut(s) | 350, 366 |
| Msp20I | TGGCCA | 1 cut(s) | 110 |
| MspCI | CTTAAG | 1 cut(s) | 224 |
| MvnI | CGCG | 2 cut(s) | 42, 795 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 76, 302, 311, 332 |
| NdeII | GATC | 8 cut(s) | 57, 237, 249, 597, 686, 829, 841, 847 |
| NlaIII | CATG | 7 cut(s) | 355, 367, 455, 695, 712, 753, 820 |
| NlaIV | GGNNCC | 2 cut(s) | 239, 706 |
| NruI | TCGCGA | 2 cut(s) | 42, 795 |
| NsbI | TGCGCA | 1 cut(s) | 215 |
| NspI | RCATGY | 1 cut(s) | 753 |
| PaeR7I | CTCGAG | 1 cut(s) | 428 |
| PagI | TCATGA | 2 cut(s) | 351, 691 |
| PdmI | GAANNNNTTC | 1 cut(s) | 540 |
| PfeI | GAWTC | 4 cut(s) | 26, 117, 455, 871 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 887 |
| PkrI | GCNGC | 5 cut(s) | 36, 78, 292, 295, 435 |
| PspN4I | GGNNCC | 2 cut(s) | 239, 706 |
| PspXI | VCTCGAGB | 1 cut(s) | 428 |
| PstI | CTGCAG | 3 cut(s) | 25, 55, 78 |
| PstNI | CAGNNNCTG | 2 cut(s) | 73, 887 |
| PsuI | RGATCY | 2 cut(s) | 237, 686 |
| RruI | TCGCGA | 2 cut(s) | 42, 795 |
| RsaI | GTAC | 2 cut(s) | 247, 519 |
| RsaNI | GTAC | 2 cut(s) | 246, 518 |
| RseI | CAYNNNNRTG | 2 cut(s) | 350, 366 |
| SaqAI | TTAA | 2 cut(s) | 225, 901 |
| SatI | GCNGC | 5 cut(s) | 35, 77, 291, 294, 434 |
| Sau3AI | GATC | 8 cut(s) | 57, 237, 249, 597, 686, 829, 841, 847 |
| SfaNI | GCATC | 2 cut(s) | 88, 229 |
| SfcI | CTRYAG | 4 cut(s) | 21, 51, 74, 170 |
| Sfr274I | CTCGAG | 1 cut(s) | 428 |
| SlaI | CTCGAG | 1 cut(s) | 428 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 350, 366 |
| SmlI | CTYRAG | 2 cut(s) | 224, 428 |
| SmoI | CTYRAG | 2 cut(s) | 224, 428 |
| Sse9I | AATT | 3 cut(s) | 529, 563, 699 |
| SsiI | CCGC | 1 cut(s) | 496 |
| SspMI | CTAG | 1 cut(s) | 672 |
| TaiI | ACGT | 2 cut(s) | 273, 717 |
| TaqI | TCGA | 1 cut(s) | 429 |
| TasI | AATT | 3 cut(s) | 529, 563, 699 |
| TatI | WGTACW | 1 cut(s) | 517 |
| TfiI | GAWTC | 4 cut(s) | 26, 117, 455, 871 |
| Tru1I | TTAA | 2 cut(s) | 225, 901 |
| Tru9I | TTAA | 2 cut(s) | 225, 901 |
| TscAI | CASTG | 2 cut(s) | 60, 589 |
| TseI | GCWGC | 5 cut(s) | 34, 76, 290, 293, 433 |
| TspDTI | ATGAA | 3 cut(s) | 345, 380, 725 |
| TspRI | CASTG | 2 cut(s) | 60, 589 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 887 |
| Vha464I | CTTAAG | 1 cut(s) | 224 |
| XapI | RAATTY | 1 cut(s) | 563 |
| XceI | RCATGY | 1 cut(s) | 753 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 414 |
| XhoI | CTCGAG | 1 cut(s) | 428 |
| XmnI | GAANNNNTTC | 1 cut(s) | 540 |
| XspI | CTAG | 1 cut(s) | 672 |