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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 367, 882, 897 |
| AclI | AACGTT | 1 cut(s) | 998 |
| AclWI | GGATC | 1 cut(s) | 839 |
| AcoI | YGGCCR | 2 cut(s) | 8, 261 |
| AcyI | GRCGYC | 1 cut(s) | 957 |
| AfaI | GTAC | 1 cut(s) | 536 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 919 |
| AgsI | TTSAA | 4 cut(s) | 341, 584, 664, 992 |
| AjiI | CACGTC | 3 cut(s) | 155, 223, 424 |
| AjnI | CCWGG | 3 cut(s) | 393, 417, 961 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 576, 608 |
| AleI | CACNNNNGTG | 1 cut(s) | 654 |
| AluBI | AGCT | 1 cut(s) | 443 |
| AluI | AGCT | 1 cut(s) | 443 |
| Alw26I | GTCTC | 2 cut(s) | 580, 784 |
| AlwI | GGATC | 1 cut(s) | 839 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 139 |
| Ama87I | CYCGRG | 1 cut(s) | 407 |
| AoxI | GGCC | 3 cut(s) | 8, 261, 566 |
| ApeKI | GCWGC | 2 cut(s) | 75, 884 |
| AseI | ATTAAT | 1 cut(s) | 710 |
| AspA2I | CCTAGG | 1 cut(s) | 917 |
| AspLEI | GCGC | 1 cut(s) | 929 |
| AspS9I | GGNCC | 1 cut(s) | 142 |
| AsuHPI | GGTGA | 2 cut(s) | 970, 977 |
| AsuNHI | GCTAGC | 1 cut(s) | 923 |
| AvaI | CYCGRG | 1 cut(s) | 407 |
| AvaII | GGWCC | 1 cut(s) | 142 |
| AvrII | CCTAGG | 1 cut(s) | 917 |
| BbsI | GAAGAC | 2 cut(s) | 561, 764 |
| BbvI | GCAGC | 2 cut(s) | 87, 871 |
| BccI | CCATC | 6 cut(s) | 157, 380, 503, 630, 784, 947 |
| BciT130I | CCWGG | 3 cut(s) | 395, 419, 963 |
| BciVI | GTATCC | 1 cut(s) | 391 |
| BcoDI | GTCTC | 2 cut(s) | 580, 784 |
| BfaI | CTAG | 4 cut(s) | 414, 626, 918, 924 |
| BfmI | CTRYAG | 3 cut(s) | 24, 36, 822 |
| BfuI | GTATCC | 1 cut(s) | 391 |
| BisI | GCNGC | 3 cut(s) | 76, 882, 885 |
| BlnI | CCTAGG | 1 cut(s) | 917 |
| BlsI | GCNGC | 3 cut(s) | 77, 883, 886 |
| Bme1390I | CCNGG | 3 cut(s) | 395, 419, 963 |
| Bme18I | GGWCC | 1 cut(s) | 142 |
| BmeT110I | CYCGRG | 1 cut(s) | 407 |
| BmgBI | CACGTC | 3 cut(s) | 155, 223, 424 |
| BmgT120I | GGNCC | 1 cut(s) | 142 |
| BmiI | GGNNCC | 1 cut(s) | 144 |
| BmrFI | CCNGG | 3 cut(s) | 395, 419, 963 |
| BmrI | ACTGGG | 1 cut(s) | 74 |
| BmsI | GCATC | 5 cut(s) | 145, 220, 382, 730, 958 |
| BmtI | GCTAGC | 1 cut(s) | 927 |
| BmuI | ACTGGG | 1 cut(s) | 74 |
| BpiI | GAAGAC | 2 cut(s) | 561, 764 |
| BpmI | CTGGAG | 2 cut(s) | 237, 515 |
| BpuEI | CTTGAG | 3 cut(s) | 362, 429, 995 |
| BsaHI | GRCGYC | 1 cut(s) | 957 |
| BsaI | GGTCTC | 1 cut(s) | 580 |
| BsaJI | CCNNGG | 4 cut(s) | 569, 917, 948, 961 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 919 |
| Bse118I | RCCGGY | 3 cut(s) | 6, 241, 263 |
| Bse1I | ACTGG | 4 cut(s) | 80, 254, 337, 532 |
| BseBI | CCWGG | 3 cut(s) | 395, 419, 963 |
| BseDI | CCNNGG | 4 cut(s) | 569, 917, 948, 961 |
| BseGI | GGATG | 4 cut(s) | 294, 498, 526, 958 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 919 |
| BseMII | CTCAG | 1 cut(s) | 812 |
| BseNI | ACTGG | 4 cut(s) | 80, 254, 337, 532 |
| BseXI | GCAGC | 2 cut(s) | 87, 871 |
| BseYI | CCCAGC | 1 cut(s) | 105 |
| BshFI | GGCC | 3 cut(s) | 10, 263, 568 |
| BsiHKCI | CYCGRG | 1 cut(s) | 407 |
| BsiSI | CCGG | 3 cut(s) | 7, 242, 264 |
| BslFI | GGGAC | 2 cut(s) | 917, 944 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 919 |
| BsmAI | GTCTC | 2 cut(s) | 580, 784 |
| BsmBI | CGTCTC | 1 cut(s) | 784 |
| BsmFI | GGGAC | 2 cut(s) | 917, 944 |
| BsnI | GGCC | 3 cut(s) | 10, 263, 568 |
| Bso31I | GGTCTC | 1 cut(s) | 580 |
| BsoBI | CYCGRG | 1 cut(s) | 407 |
| Bsp143I | GATC | 3 cut(s) | 16, 732, 831 |
| Bsp19I | CCATGG | 2 cut(s) | 569, 948 |
| BspACI | CCGC | 3 cut(s) | 367, 882, 897 |
| BspANI | GGCC | 3 cut(s) | 10, 263, 568 |
| BspCNI | CTCAG | 1 cut(s) | 811 |
| BspLI | GGNNCC | 1 cut(s) | 144 |
| BspMAI | CTGCAG | 2 cut(s) | 28, 826 |
| BspOI | GCTAGC | 1 cut(s) | 927 |
| BspPI | GGATC | 1 cut(s) | 839 |
| BspTNI | GGTCTC | 1 cut(s) | 580 |
| BsrFI | RCCGGY | 3 cut(s) | 6, 241, 263 |
| BsrI | ACTGG | 4 cut(s) | 80, 254, 337, 532 |
| BssAI | RCCGGY | 3 cut(s) | 6, 241, 263 |
| BssECI | CCNNGG | 4 cut(s) | 569, 917, 948, 961 |
| BssMI | GATC | 3 cut(s) | 16, 732, 831 |
| BssNI | GRCGYC | 1 cut(s) | 957 |
| BssT1I | CCWWGG | 3 cut(s) | 569, 917, 948 |
| Bst2UI | CCWGG | 3 cut(s) | 395, 419, 963 |
| BstACI | GRCGYC | 1 cut(s) | 957 |
| BstC8I | GCNNGC | 5 cut(s) | 125, 200, 371, 441, 925 |
| BstDEI | CTNAG | 3 cut(s) | 472, 798, 1077 |
| BstDSI | CCRYGG | 2 cut(s) | 569, 948 |
| BstF5I | GGATG | 4 cut(s) | 294, 498, 526, 958 |
| BstHHI | GCGC | 1 cut(s) | 929 |
| BstKTI | GATC | 3 cut(s) | 19, 735, 834 |
| BstMAI | GTCTC | 2 cut(s) | 580, 784 |
| BstMBI | GATC | 3 cut(s) | 16, 732, 831 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 133, 182, 208, 464, 485 |
| BstNI | CCWGG | 3 cut(s) | 395, 419, 963 |
| BstSCI | CCNGG | 3 cut(s) | 393, 417, 961 |
| BstSFI | CTRYAG | 3 cut(s) | 24, 36, 822 |
| BstV1I | GCAGC | 2 cut(s) | 87, 871 |
| BstV2I | GAAGAC | 2 cut(s) | 561, 764 |
| BsuI | GTATCC | 1 cut(s) | 391 |
| BsuRI | GGCC | 3 cut(s) | 10, 263, 568 |
| BtgI | CCRYGG | 2 cut(s) | 569, 948 |
| BtgZI | GCGATG | 1 cut(s) | 758 |
| BtrI | CACGTC | 3 cut(s) | 155, 223, 424 |
| BtsCI | GGATG | 4 cut(s) | 294, 498, 526, 958 |
| BtsI | GCAGTG | 2 cut(s) | 146, 876 |
| BtsIMutI | CAGTG | 4 cut(s) | 111, 146, 221, 876 |
| Cac8I | GCNNGC | 5 cut(s) | 125, 200, 371, 441, 925 |
| CaiI | CAGNNNCTG | 1 cut(s) | 139 |
| CfoI | GCGC | 1 cut(s) | 929 |
| Cfr10I | RCCGGY | 3 cut(s) | 6, 241, 263 |
| Cfr13I | GGNCC | 1 cut(s) | 142 |
| CseI | GACGC | 2 cut(s) | 946, 1015 |
| Csp6I | GTAC | 1 cut(s) | 535 |
| CviAII | CATG | 5 cut(s) | 570, 815, 841, 941, 949 |
| CviQI | GTAC | 1 cut(s) | 535 |
| DdeI | CTNAG | 3 cut(s) | 472, 798, 1077 |
| DpnI | GATC | 3 cut(s) | 18, 734, 833 |
| DpnII | GATC | 3 cut(s) | 16, 732, 831 |
| EaeI | YGGCCR | 2 cut(s) | 8, 261 |
| EciI | GGCGGA | 1 cut(s) | 356 |
| Eco130I | CCWWGG | 3 cut(s) | 569, 917, 948 |
| Eco31I | GGTCTC | 1 cut(s) | 580 |
| Eco47I | GGWCC | 1 cut(s) | 142 |
| Eco88I | CYCGRG | 1 cut(s) | 407 |
| EcoRII | CCWGG | 3 cut(s) | 393, 417, 961 |
| EcoT14I | CCWWGG | 3 cut(s) | 569, 917, 948 |
| ErhI | CCWWGG | 3 cut(s) | 569, 917, 948 |
| Esp3I | CGTCTC | 1 cut(s) | 784 |
| FaeI | CATG | 5 cut(s) | 573, 818, 844, 944, 952 |
| FaqI | GGGAC | 2 cut(s) | 917, 944 |
| FatI | CATG | 5 cut(s) | 569, 814, 840, 940, 948 |
| FauNDI | CATATG | 1 cut(s) | 516 |
| Fnu4HI | GCNGC | 3 cut(s) | 76, 882, 885 |
| FokI | GGATG | 4 cut(s) | 301, 485, 533, 965 |
| Fsp4HI | GCNGC | 3 cut(s) | 76, 882, 885 |
| FspBI | CTAG | 4 cut(s) | 414, 626, 918, 924 |
| GlaI | GCGC | 1 cut(s) | 928 |
| GluI | GCNGC | 3 cut(s) | 76, 882, 885 |
| GsaI | CCCAGC | 1 cut(s) | 109 |
| GsuI | CTGGAG | 2 cut(s) | 237, 515 |
| HaeIII | GGCC | 3 cut(s) | 10, 263, 568 |
| HapII | CCGG | 3 cut(s) | 7, 242, 264 |
| HgaI | GACGC | 2 cut(s) | 946, 1015 |
| HhaI | GCGC | 1 cut(s) | 929 |
| Hin1I | GRCGYC | 1 cut(s) | 957 |
| Hin1II | CATG | 5 cut(s) | 573, 818, 844, 944, 952 |
| Hin6I | GCGC | 1 cut(s) | 927 |
| HinP1I | GCGC | 1 cut(s) | 927 |
| HincII | GTYRAC | 3 cut(s) | 237, 269, 281 |
| HindII | GTYRAC | 3 cut(s) | 237, 269, 281 |
| HpaII | CCGG | 3 cut(s) | 7, 242, 264 |
| HphI | GGTGA | 2 cut(s) | 970, 977 |
| Hpy166II | GTNNAC | 3 cut(s) | 237, 269, 281 |
| Hpy188I | TCNGA | 5 cut(s) | 162, 288, 688, 801, 1005 |
| Hpy188III | TCNNGA | 5 cut(s) | 140, 359, 407, 620, 674 |
| Hpy8I | GTNNAC | 3 cut(s) | 237, 269, 281 |
| Hpy99I | CGWCG | 1 cut(s) | 288 |
| HpyAV | CCTTC | 2 cut(s) | 558, 781 |
| HpyCH4IV | ACGT | 6 cut(s) | 154, 222, 283, 423, 600, 998 |
| HpyCH4V | TGCA | 4 cut(s) | 26, 699, 785, 824 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 133, 182, 208, 464, 485 |
| HpyF3I | CTNAG | 3 cut(s) | 472, 798, 1077 |
| HpySE526I | ACGT | 6 cut(s) | 154, 222, 283, 423, 600, 998 |
| Hsp92I | GRCGYC | 1 cut(s) | 957 |
| Hsp92II | CATG | 5 cut(s) | 573, 818, 844, 944, 952 |
| HspAI | GCGC | 1 cut(s) | 927 |
| Kzo9I | GATC | 3 cut(s) | 16, 732, 831 |
| LmnI | GCTCC | 2 cut(s) | 322, 534 |
| Lsp1109I | GCAGC | 2 cut(s) | 87, 871 |
| LweI | GCATC | 5 cut(s) | 145, 220, 382, 730, 958 |
| MaeI | CTAG | 4 cut(s) | 414, 626, 918, 924 |
| MaeII | ACGT | 6 cut(s) | 154, 222, 283, 423, 600, 998 |
| MaeIII | GTNAC | 4 cut(s) | 293, 605, 817, 871 |
| MalI | GATC | 3 cut(s) | 18, 734, 833 |
| MboI | GATC | 3 cut(s) | 16, 732, 831 |
| MboII | GAAGA | 8 cut(s) | 11, 74, 77, 104, 566, 596, 769, 1031 |
| MluCI | AATT | 4 cut(s) | 305, 429, 591, 716 |
| MlyI | GAGTC | 3 cut(s) | 161, 602, 754 |
| MmeI | TCCRAC | 1 cut(s) | 266 |
| MnlI | CCTC | 7 cut(s) | 261, 283, 469, 656, 910, 1038, 1059 |
| MseI | TTAA | 2 cut(s) | 702, 710 |
| MslI | CAYNNNNRTG | 4 cut(s) | 503, 519, 654, 839 |
| MspA1I | CMGCKG | 1 cut(s) | 884 |
| MspI | CCGG | 3 cut(s) | 7, 242, 264 |
| MspR9I | CCNGG | 3 cut(s) | 395, 419, 963 |
| MvaI | CCWGG | 3 cut(s) | 395, 419, 963 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 133, 182, 208, 464, 485 |
| NcoI | CCATGG | 2 cut(s) | 569, 948 |
| NdeI | CATATG | 1 cut(s) | 516 |
| NdeII | GATC | 3 cut(s) | 16, 732, 831 |
| NheI | GCTAGC | 1 cut(s) | 923 |
| NlaIII | CATG | 5 cut(s) | 573, 818, 844, 944, 952 |
| NlaIV | GGNNCC | 1 cut(s) | 144 |
| NmuCI | GTSAC | 1 cut(s) | 605 |
| OliI | CACNNNNGTG | 1 cut(s) | 654 |
| PaeR7I | CTCGAG | 1 cut(s) | 407 |
| PfeI | GAWTC | 8 cut(s) | 390, 403, 508, 524, 689, 810, 844, 856 |
| PfoI | TCCNGGA | 1 cut(s) | 393 |
| PkrI | GCNGC | 3 cut(s) | 77, 883, 886 |
| PleI | GAGTC | 3 cut(s) | 161, 602, 754 |
| PpsI | GAGTC | 3 cut(s) | 161, 602, 754 |
| PshBI | ATTAAT | 1 cut(s) | 710 |
| Psp1406I | AACGTT | 1 cut(s) | 998 |
| Psp6I | CCWGG | 3 cut(s) | 393, 417, 961 |
| PspFI | CCCAGC | 1 cut(s) | 105 |
| PspGI | CCWGG | 3 cut(s) | 393, 417, 961 |
| PspN4I | GGNNCC | 1 cut(s) | 144 |
| PspPI | GGNCC | 1 cut(s) | 142 |
| PstI | CTGCAG | 2 cut(s) | 28, 826 |
| PstNI | CAGNNNCTG | 1 cut(s) | 139 |
| RsaI | GTAC | 1 cut(s) | 536 |
| RsaNI | GTAC | 1 cut(s) | 535 |
| RseI | CAYNNNNRTG | 4 cut(s) | 503, 519, 654, 839 |
| SaqAI | TTAA | 2 cut(s) | 702, 710 |
| SatI | GCNGC | 3 cut(s) | 76, 882, 885 |
| Sau3AI | GATC | 3 cut(s) | 16, 732, 831 |
| Sau96I | GGNCC | 1 cut(s) | 142 |
| SchI | GAGTC | 3 cut(s) | 161, 602, 754 |
| ScrFI | CCNGG | 3 cut(s) | 395, 419, 963 |
| SfaNI | GCATC | 5 cut(s) | 145, 220, 382, 730, 958 |
| SfcI | CTRYAG | 3 cut(s) | 24, 36, 822 |
| Sfr274I | CTCGAG | 1 cut(s) | 407 |
| SinI | GGWCC | 1 cut(s) | 142 |
| SlaI | CTCGAG | 1 cut(s) | 407 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 503, 519, 654, 839 |
| SmlI | CTYRAG | 4 cut(s) | 377, 407, 444, 1010 |
| SmoI | CTYRAG | 4 cut(s) | 377, 407, 444, 1010 |
| Sse9I | AATT | 4 cut(s) | 305, 429, 591, 716 |
| SsiI | CCGC | 3 cut(s) | 367, 882, 897 |
| SspMI | CTAG | 4 cut(s) | 414, 626, 918, 924 |
| StyD4I | CCNGG | 3 cut(s) | 393, 417, 961 |
| StyI | CCWWGG | 3 cut(s) | 569, 917, 948 |
| TaiI | ACGT | 6 cut(s) | 157, 225, 286, 426, 603, 1001 |
| TaqI | TCGA | 3 cut(s) | 384, 408, 808 |
| TasI | AATT | 4 cut(s) | 305, 429, 591, 716 |
| TauI | GCSGC | 1 cut(s) | 884 |
| TfiI | GAWTC | 8 cut(s) | 390, 403, 508, 524, 689, 810, 844, 856 |
| Tru1I | TTAA | 2 cut(s) | 702, 710 |
| Tru9I | TTAA | 2 cut(s) | 702, 710 |
| TscAI | CASTG | 4 cut(s) | 118, 153, 221, 883 |
| TseFI | GTSAC | 1 cut(s) | 605 |
| TseI | GCWGC | 2 cut(s) | 75, 884 |
| Tsp45I | GTSAC | 1 cut(s) | 605 |
| TspDTI | ATGAA | 4 cut(s) | 17, 560, 567, 857 |
| TspGWI | ACGGA | 2 cut(s) | 593, 844 |
| TspRI | CASTG | 4 cut(s) | 118, 153, 221, 883 |
| VpaK11BI | GGWCC | 1 cut(s) | 142 |
| VspI | ATTAAT | 1 cut(s) | 710 |
| XhoI | CTCGAG | 1 cut(s) | 407 |
| XmaJI | CCTAGG | 1 cut(s) | 917 |
| XspI | CTAG | 4 cut(s) | 414, 626, 918, 924 |