gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 173, 424 |
| AclWI | GGATC | 3 cut(s) | 248, 261, 316 |
| AcoI | YGGCCR | 1 cut(s) | 189 |
| AcsI | RAATTY | 1 cut(s) | 298 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 263, 312 |
| AgeI | ACCGGT | 1 cut(s) | 263 |
| AgsI | TTSAA | 3 cut(s) | 136, 334, 343 |
| AjiI | CACGTC | 1 cut(s) | 481 |
| AjnI | CCWGG | 5 cut(s) | 45, 159, 325, 450, 474 |
| AluBI | AGCT | 3 cut(s) | 469, 500, 506 |
| AluI | AGCT | 3 cut(s) | 469, 500, 506 |
| AlwI | GGATC | 3 cut(s) | 248, 261, 316 |
| Ama87I | CYCGRG | 1 cut(s) | 464 |
| AoxI | GGCC | 1 cut(s) | 189 |
| ApeKI | GCWGC | 1 cut(s) | 524 |
| ApoI | RAATTY | 1 cut(s) | 298 |
| AsiGI | ACCGGT | 1 cut(s) | 263 |
| AspS9I | GGNCC | 1 cut(s) | 280 |
| AsuHPI | GGTGA | 1 cut(s) | 261 |
| AvaI | CYCGRG | 1 cut(s) | 464 |
| AvaII | GGWCC | 1 cut(s) | 280 |
| BamHI | GGATCC | 1 cut(s) | 253 |
| BbvI | GCAGC | 1 cut(s) | 536 |
| BccI | CCATC | 2 cut(s) | 437, 560 |
| BciT130I | CCWGG | 5 cut(s) | 47, 161, 327, 452, 476 |
| BciVI | GTATCC | 1 cut(s) | 448 |
| BfaI | CTAG | 1 cut(s) | 107 |
| BfuI | GTATCC | 1 cut(s) | 448 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 533 |
| BisI | GCNGC | 1 cut(s) | 525 |
| BlpI | GCTNAGC | 1 cut(s) | 470 |
| BlsI | GCNGC | 1 cut(s) | 526 |
| Bme1390I | CCNGG | 5 cut(s) | 47, 161, 327, 452, 476 |
| Bme18I | GGWCC | 1 cut(s) | 280 |
| BmeT110I | CYCGRG | 1 cut(s) | 464 |
| BmgBI | CACGTC | 1 cut(s) | 481 |
| BmgT120I | GGNCC | 1 cut(s) | 280 |
| BmiI | GGNNCC | 2 cut(s) | 177, 255 |
| BmrFI | CCNGG | 5 cut(s) | 47, 161, 327, 452, 476 |
| BmsI | GCATC | 1 cut(s) | 439 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 470 |
| BpuEI | CTTGAG | 2 cut(s) | 419, 486 |
| Bsa29I | ATCGAT | 1 cut(s) | 58 |
| BsaJI | CCNNGG | 3 cut(s) | 159, 200, 325 |
| BsaWI | WCCGGW | 2 cut(s) | 214, 263 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 263, 312 |
| Bse118I | RCCGGY | 1 cut(s) | 263 |
| Bse1I | ACTGG | 1 cut(s) | 394 |
| BseBI | CCWGG | 5 cut(s) | 47, 161, 327, 452, 476 |
| BseCI | ATCGAT | 1 cut(s) | 58 |
| BseDI | CCNNGG | 3 cut(s) | 159, 200, 325 |
| BseGI | GGATG | 2 cut(s) | 24, 583 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 263, 312 |
| BseNI | ACTGG | 1 cut(s) | 394 |
| BseX3I | CGGCCG | 1 cut(s) | 189 |
| BseXI | GCAGC | 1 cut(s) | 536 |
| BsgI | GTGCAG | 1 cut(s) | 244 |
| Bsh1285I | CGRYCG | 1 cut(s) | 192 |
| BshFI | GGCC | 1 cut(s) | 191 |
| BshTI | ACCGGT | 1 cut(s) | 263 |
| BshVI | ATCGAT | 1 cut(s) | 58 |
| BsiEI | CGRYCG | 1 cut(s) | 192 |
| BsiHKCI | CYCGRG | 1 cut(s) | 464 |
| BsiSI | CCGG | 3 cut(s) | 192, 215, 264 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 263, 312 |
| BsnI | GGCC | 1 cut(s) | 191 |
| BsoBI | CYCGRG | 1 cut(s) | 464 |
| Bsp143I | GATC | 4 cut(s) | 55, 59, 253, 321 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 470 |
| BspACI | CCGC | 2 cut(s) | 173, 424 |
| BspANI | GGCC | 1 cut(s) | 191 |
| BspDI | ATCGAT | 1 cut(s) | 58 |
| BspLI | GGNNCC | 2 cut(s) | 177, 255 |
| BspPI | GGATC | 3 cut(s) | 248, 261, 316 |
| BsrFI | RCCGGY | 1 cut(s) | 263 |
| BsrI | ACTGG | 1 cut(s) | 394 |
| BssAI | RCCGGY | 1 cut(s) | 263 |
| BssECI | CCNNGG | 3 cut(s) | 159, 200, 325 |
| BssMI | GATC | 4 cut(s) | 55, 59, 253, 321 |
| BssT1I | CCWWGG | 1 cut(s) | 200 |
| Bst2UI | CCWGG | 5 cut(s) | 47, 161, 327, 452, 476 |
| BstC8I | GCNNGC | 2 cut(s) | 428, 498 |
| BstDEI | CTNAG | 4 cut(s) | 122, 237, 470, 529 |
| BstF5I | GGATG | 2 cut(s) | 24, 583 |
| BstKTI | GATC | 4 cut(s) | 58, 62, 256, 324 |
| BstMBI | GATC | 4 cut(s) | 55, 59, 253, 321 |
| BstMCI | CGRYCG | 1 cut(s) | 192 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 86, 512, 521, 533, 542 |
| BstNI | CCWGG | 5 cut(s) | 47, 161, 327, 452, 476 |
| BstSCI | CCNGG | 5 cut(s) | 45, 159, 325, 450, 474 |
| BstV1I | GCAGC | 1 cut(s) | 536 |
| BstX2I | RGATCY | 1 cut(s) | 253 |
| BstYI | RGATCY | 1 cut(s) | 253 |
| BstZI | CGGCCG | 1 cut(s) | 189 |
| Bsu15I | ATCGAT | 1 cut(s) | 58 |
| BsuI | GTATCC | 1 cut(s) | 448 |
| BsuRI | GGCC | 1 cut(s) | 191 |
| BsuTUI | ATCGAT | 1 cut(s) | 58 |
| BtrI | CACGTC | 1 cut(s) | 481 |
| BtsCI | GGATG | 2 cut(s) | 24, 583 |
| Cac8I | GCNNGC | 2 cut(s) | 428, 498 |
| Cfr10I | RCCGGY | 1 cut(s) | 263 |
| Cfr13I | GGNCC | 1 cut(s) | 280 |
| ClaI | ATCGAT | 1 cut(s) | 58 |
| CspAI | ACCGGT | 1 cut(s) | 263 |
| CviAII | CATG | 2 cut(s) | 63, 127 |
| CviJI | RGCY | 9 cut(s) | 191, 211, 393, 469, 474, 500, 506, 527, 551 |
| CviKI_1 | RGCY | 9 cut(s) | 191, 211, 393, 469, 474, 500, 506, 527, 551 |
| DdeI | CTNAG | 4 cut(s) | 122, 237, 470, 529 |
| DpnI | GATC | 4 cut(s) | 57, 61, 255, 323 |
| DpnII | GATC | 4 cut(s) | 55, 59, 253, 321 |
| EaeI | YGGCCR | 1 cut(s) | 189 |
| EagI | CGGCCG | 1 cut(s) | 189 |
| EciI | GGCGGA | 2 cut(s) | 188, 413 |
| EclXI | CGGCCG | 1 cut(s) | 189 |
| Eco130I | CCWWGG | 1 cut(s) | 200 |
| Eco32I | GATATC | 1 cut(s) | 401 |
| Eco47I | GGWCC | 1 cut(s) | 280 |
| Eco52I | CGGCCG | 1 cut(s) | 189 |
| Eco88I | CYCGRG | 1 cut(s) | 464 |
| EcoRII | CCWGG | 5 cut(s) | 45, 159, 325, 450, 474 |
| EcoRV | GATATC | 1 cut(s) | 401 |
| EcoT14I | CCWWGG | 1 cut(s) | 200 |
| ErhI | CCWWGG | 1 cut(s) | 200 |
| FaeI | CATG | 2 cut(s) | 66, 130 |
| FaiI | YATR | 5 cut(s) | 64, 69, 128, 573, 575 |
| FatI | CATG | 2 cut(s) | 62, 126 |
| FauNDI | CATATG | 1 cut(s) | 573 |
| Fnu4HI | GCNGC | 1 cut(s) | 525 |
| FokI | GGATG | 1 cut(s) | 31 |
| Fsp4HI | GCNGC | 1 cut(s) | 525 |
| FspBI | CTAG | 1 cut(s) | 107 |
| GluI | GCNGC | 1 cut(s) | 525 |
| HaeIII | GGCC | 1 cut(s) | 191 |
| HapII | CCGG | 3 cut(s) | 192, 215, 264 |
| Hin1II | CATG | 2 cut(s) | 66, 130 |
| HindIII | AAGCTT | 1 cut(s) | 504 |
| HinfI | GANTC | 7 cut(s) | 185, 205, 226, 330, 447, 460, 565 |
| HpaII | CCGG | 3 cut(s) | 192, 215, 264 |
| HphI | GGTGA | 1 cut(s) | 261 |
| Hpy166II | GTNNAC | 1 cut(s) | 269 |
| Hpy188I | TCNGA | 3 cut(s) | 86, 280, 287 |
| Hpy188III | TCNNGA | 5 cut(s) | 319, 334, 396, 416, 464 |
| Hpy8I | GTNNAC | 1 cut(s) | 269 |
| HpyAV | CCTTC | 2 cut(s) | 243, 285 |
| HpyCH4IV | ACGT | 1 cut(s) | 480 |
| HpyCH4V | TGCA | 1 cut(s) | 261 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 86, 512, 521, 533, 542 |
| HpyF3I | CTNAG | 4 cut(s) | 122, 237, 470, 529 |
| HpySE526I | ACGT | 1 cut(s) | 480 |
| Hsp92II | CATG | 2 cut(s) | 66, 130 |
| Kzo9I | GATC | 4 cut(s) | 55, 59, 253, 321 |
| LmnI | GCTCC | 2 cut(s) | 86, 379 |
| Lsp1109I | GCAGC | 1 cut(s) | 536 |
| LweI | GCATC | 1 cut(s) | 439 |
| MaeI | CTAG | 1 cut(s) | 107 |
| MaeII | ACGT | 1 cut(s) | 480 |
| MaeIII | GTNAC | 1 cut(s) | 350 |
| MalI | GATC | 4 cut(s) | 57, 61, 255, 323 |
| MboI | GATC | 4 cut(s) | 55, 59, 253, 321 |
| MboII | GAAGA | 3 cut(s) | 44, 253, 355 |
| MflI | RGATCY | 1 cut(s) | 253 |
| MluCI | AATT | 2 cut(s) | 298, 362 |
| MlyI | GAGTC | 1 cut(s) | 559 |
| MnlI | CCTC | 4 cut(s) | 162, 163, 293, 526 |
| MslI | CAYNNNNRTG | 2 cut(s) | 560, 576 |
| MspI | CCGG | 3 cut(s) | 192, 215, 264 |
| MspR9I | CCNGG | 5 cut(s) | 47, 161, 327, 452, 476 |
| MvaI | CCWGG | 5 cut(s) | 47, 161, 327, 452, 476 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 86, 512, 521, 533, 542 |
| NdeI | CATATG | 1 cut(s) | 573 |
| NdeII | GATC | 4 cut(s) | 55, 59, 253, 321 |
| NlaIII | CATG | 2 cut(s) | 66, 130 |
| NlaIV | GGNNCC | 2 cut(s) | 177, 255 |
| PaeR7I | CTCGAG | 1 cut(s) | 464 |
| PfeI | GAWTC | 6 cut(s) | 185, 205, 226, 330, 447, 460 |
| PfoI | TCCNGGA | 1 cut(s) | 450 |
| PinAI | ACCGGT | 1 cut(s) | 263 |
| PkrI | GCNGC | 1 cut(s) | 526 |
| PleI | GAGTC | 1 cut(s) | 559 |
| PpsI | GAGTC | 1 cut(s) | 559 |
| Psp6I | CCWGG | 5 cut(s) | 45, 159, 325, 450, 474 |
| PspGI | CCWGG | 5 cut(s) | 45, 159, 325, 450, 474 |
| PspN4I | GGNNCC | 2 cut(s) | 177, 255 |
| PspPI | GGNCC | 1 cut(s) | 280 |
| PsuI | RGATCY | 1 cut(s) | 253 |
| RseI | CAYNNNNRTG | 2 cut(s) | 560, 576 |
| SatI | GCNGC | 1 cut(s) | 525 |
| Sau3AI | GATC | 4 cut(s) | 55, 59, 253, 321 |
| Sau96I | GGNCC | 1 cut(s) | 280 |
| SchI | GAGTC | 1 cut(s) | 559 |
| ScrFI | CCNGG | 5 cut(s) | 47, 161, 327, 452, 476 |
| SfaNI | GCATC | 1 cut(s) | 439 |
| Sfr274I | CTCGAG | 1 cut(s) | 464 |
| SinI | GGWCC | 1 cut(s) | 280 |
| SlaI | CTCGAG | 1 cut(s) | 464 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 560, 576 |
| SmlI | CTYRAG | 3 cut(s) | 434, 464, 501 |
| SmoI | CTYRAG | 3 cut(s) | 434, 464, 501 |
| Sse9I | AATT | 2 cut(s) | 298, 362 |
| SsiI | CCGC | 2 cut(s) | 173, 424 |
| SspMI | CTAG | 1 cut(s) | 107 |
| StyD4I | CCNGG | 5 cut(s) | 45, 159, 325, 450, 474 |
| StyI | CCWWGG | 1 cut(s) | 200 |
| TaiI | ACGT | 1 cut(s) | 483 |
| TaqI | TCGA | 5 cut(s) | 58, 168, 224, 441, 465 |
| TasI | AATT | 2 cut(s) | 298, 362 |
| TfiI | GAWTC | 6 cut(s) | 185, 205, 226, 330, 447, 460 |
| TseI | GCWGC | 1 cut(s) | 524 |
| VpaK11BI | GGWCC | 1 cut(s) | 280 |
| XapI | RAATTY | 1 cut(s) | 298 |
| XhoI | CTCGAG | 1 cut(s) | 464 |
| XspI | CTAG | 1 cut(s) | 107 |