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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 50 |
| AccB1I | GGYRCC | 2 cut(s) | 386, 467 |
| AciI | CCGC | 1 cut(s) | 390 |
| AclWI | GGATC | 1 cut(s) | 158 |
| AcyI | GRCGYC | 1 cut(s) | 468 |
| AfaI | GTAC | 1 cut(s) | 55 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 412, 416 |
| AgsI | TTSAA | 2 cut(s) | 178, 503 |
| AjiI | CACGTC | 1 cut(s) | 331 |
| AluBI | AGCT | 3 cut(s) | 216, 323, 362 |
| AluI | AGCT | 3 cut(s) | 216, 323, 362 |
| Alw21I | GWGCWC | 1 cut(s) | 14 |
| AlwI | GGATC | 1 cut(s) | 158 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 373 |
| AoxI | GGCC | 2 cut(s) | 99, 524 |
| AspA2I | CCTAGG | 2 cut(s) | 410, 472 |
| AspLEI | GCGC | 3 cut(s) | 6, 422, 470 |
| AspS9I | GGNCC | 2 cut(s) | 122, 344 |
| AsuC2I | CCSGG | 1 cut(s) | 341 |
| AsuHPI | GGTGA | 3 cut(s) | 473, 481, 488 |
| AvaII | GGWCC | 2 cut(s) | 122, 344 |
| AvrII | CCTAGG | 2 cut(s) | 410, 472 |
| AxyI | CCTNAGG | 1 cut(s) | 381 |
| BaeGI | GKGCMC | 1 cut(s) | 389 |
| BanI | GGYRCC | 2 cut(s) | 386, 467 |
| BanII | GRGCYC | 1 cut(s) | 270 |
| Bbv12I | GWGCWC | 1 cut(s) | 14 |
| BccI | CCATC | 3 cut(s) | 74, 458, 462 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 133, 167 |
| BciVI | GTATCC | 1 cut(s) | 23 |
| BcnI | CCSGG | 1 cut(s) | 341 |
| BfaI | CTAG | 3 cut(s) | 363, 411, 473 |
| BfoI | RGCGCY | 1 cut(s) | 471 |
| BfuI | GTATCC | 1 cut(s) | 23 |
| BlnI | CCTAGG | 2 cut(s) | 410, 472 |
| BlpI | GCTNAGC | 1 cut(s) | 217 |
| Bme1390I | CCNGG | 1 cut(s) | 341 |
| Bme18I | GGWCC | 2 cut(s) | 122, 344 |
| BmgBI | CACGTC | 1 cut(s) | 331 |
| BmgT120I | GGNCC | 2 cut(s) | 122, 344 |
| BmiI | GGNNCC | 4 cut(s) | 345, 346, 388, 469 |
| BmrFI | CCNGG | 1 cut(s) | 341 |
| Bpu10I | CCTNAGC | 1 cut(s) | 521 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 217 |
| BpuEI | CTTGAG | 1 cut(s) | 28 |
| BpuMI | CCSGG | 1 cut(s) | 341 |
| BsaHI | GRCGYC | 1 cut(s) | 468 |
| BsaJI | CCNNGG | 4 cut(s) | 340, 410, 441, 472 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 412, 416 |
| Bse21I | CCTNAGG | 1 cut(s) | 381 |
| Bse3DI | GCAATG | 1 cut(s) | 31 |
| BseDI | CCNNGG | 4 cut(s) | 340, 410, 441, 472 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 412, 416 |
| BseMI | GCAATG | 1 cut(s) | 31 |
| BseMII | CTCAG | 2 cut(s) | 231, 535 |
| BseSI | GKGCMC | 1 cut(s) | 389 |
| BseYI | CCCAGC | 1 cut(s) | 222 |
| BshFI | GGCC | 2 cut(s) | 101, 526 |
| BshNI | GGYRCC | 2 cut(s) | 386, 467 |
| BsiHKAI | GWGCWC | 1 cut(s) | 14 |
| BsiSI | CCGG | 1 cut(s) | 340 |
| BslFI | GGGAC | 2 cut(s) | 357, 410 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 412, 416 |
| BsmFI | GGGAC | 2 cut(s) | 357, 410 |
| BsnI | GGCC | 2 cut(s) | 101, 526 |
| Bsp1286I | GDGCHC | 3 cut(s) | 14, 270, 389 |
| Bsp143I | GATC | 1 cut(s) | 150 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 217 |
| Bsp19I | CCATGG | 1 cut(s) | 441 |
| BspACI | CCGC | 1 cut(s) | 390 |
| BspANI | GGCC | 2 cut(s) | 101, 526 |
| BspCNI | CTCAG | 2 cut(s) | 230, 534 |
| BspLI | GGNNCC | 4 cut(s) | 345, 346, 388, 469 |
| BspPI | GGATC | 1 cut(s) | 158 |
| BspQI | GCTCTTC | 1 cut(s) | 258 |
| BspT107I | GGYRCC | 2 cut(s) | 386, 467 |
| BsrDI | GCAATG | 1 cut(s) | 31 |
| BssECI | CCNNGG | 4 cut(s) | 340, 410, 441, 472 |
| BssMI | GATC | 1 cut(s) | 150 |
| BssNI | GRCGYC | 1 cut(s) | 468 |
| BssT1I | CCWWGG | 3 cut(s) | 410, 441, 472 |
| Bst6I | CTCTTC | 1 cut(s) | 258 |
| BstACI | GRCGYC | 1 cut(s) | 468 |
| BstC8I | GCNNGC | 3 cut(s) | 214, 325, 418 |
| BstDEI | CTNAG | 4 cut(s) | 217, 381, 521, 588 |
| BstDSI | CCRYGG | 1 cut(s) | 441 |
| BstH2I | RGCGCY | 1 cut(s) | 471 |
| BstHHI | GCGC | 3 cut(s) | 6, 422, 470 |
| BstKTI | GATC | 1 cut(s) | 153 |
| BstMBI | GATC | 1 cut(s) | 150 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 218, 320, 359, 556 |
| BstSCI | CCNGG | 1 cut(s) | 339 |
| BstSLI | GKGCMC | 1 cut(s) | 389 |
| Bsu36I | CCTNAGG | 1 cut(s) | 381 |
| BsuI | GTATCC | 1 cut(s) | 23 |
| BsuRI | GGCC | 2 cut(s) | 101, 526 |
| BtgI | CCRYGG | 1 cut(s) | 441 |
| BtrI | CACGTC | 1 cut(s) | 331 |
| BtsI | GCAGTG | 1 cut(s) | 348 |
| BtsIMutI | CAGTG | 2 cut(s) | 278, 348 |
| Cac8I | GCNNGC | 3 cut(s) | 214, 325, 418 |
| CaiI | CAGNNNCTG | 1 cut(s) | 373 |
| CfoI | GCGC | 3 cut(s) | 6, 422, 470 |
| Cfr13I | GGNCC | 2 cut(s) | 122, 344 |
| CseI | GACGC | 1 cut(s) | 526 |
| Csp6I | GTAC | 1 cut(s) | 54 |
| CviAII | CATG | 4 cut(s) | 91, 355, 442, 458 |
| CviQI | GTAC | 1 cut(s) | 54 |
| DdeI | CTNAG | 4 cut(s) | 217, 381, 521, 588 |
| DinI | GGCGCC | 1 cut(s) | 469 |
| DpnI | GATC | 1 cut(s) | 152 |
| DpnII | GATC | 1 cut(s) | 150 |
| Eam1104I | CTCTTC | 1 cut(s) | 258 |
| EarI | CTCTTC | 1 cut(s) | 258 |
| Eco130I | CCWWGG | 3 cut(s) | 410, 441, 472 |
| Eco147I | AGGCCT | 1 cut(s) | 526 |
| Eco24I | GRGCYC | 1 cut(s) | 270 |
| Eco47I | GGWCC | 2 cut(s) | 122, 344 |
| Eco81I | CCTNAGG | 1 cut(s) | 381 |
| EcoO109I | RGGNCCY | 2 cut(s) | 122, 344 |
| EcoT14I | CCWWGG | 3 cut(s) | 410, 441, 472 |
| EcoT38I | GRGCYC | 1 cut(s) | 270 |
| EgeI | GGCGCC | 1 cut(s) | 469 |
| EheI | GGCGCC | 1 cut(s) | 469 |
| ErhI | CCWWGG | 3 cut(s) | 410, 441, 472 |
| FaeI | CATG | 4 cut(s) | 94, 358, 445, 461 |
| FaiI | YATR | 6 cut(s) | 50, 92, 356, 435, 443, 459 |
| FaqI | GGGAC | 2 cut(s) | 357, 410 |
| FatI | CATG | 4 cut(s) | 90, 354, 441, 457 |
| FriOI | GRGCYC | 1 cut(s) | 270 |
| FspBI | CTAG | 3 cut(s) | 363, 411, 473 |
| GlaI | GCGC | 3 cut(s) | 5, 421, 469 |
| GsaI | CCCAGC | 1 cut(s) | 226 |
| HaeII | RGCGCY | 1 cut(s) | 471 |
| HaeIII | GGCC | 2 cut(s) | 101, 526 |
| HapII | CCGG | 1 cut(s) | 340 |
| HgaI | GACGC | 1 cut(s) | 526 |
| HhaI | GCGC | 3 cut(s) | 6, 422, 470 |
| Hin1I | GRCGYC | 1 cut(s) | 468 |
| Hin1II | CATG | 4 cut(s) | 94, 358, 445, 461 |
| Hin6I | GCGC | 3 cut(s) | 4, 420, 468 |
| HinP1I | GCGC | 3 cut(s) | 4, 420, 468 |
| HinfI | GANTC | 1 cut(s) | 336 |
| HpaII | CCGG | 1 cut(s) | 340 |
| HphI | GGTGA | 3 cut(s) | 473, 481, 488 |
| Hpy166II | GTNNAC | 1 cut(s) | 400 |
| Hpy188I | TCNGA | 2 cut(s) | 335, 516 |
| Hpy8I | GTNNAC | 1 cut(s) | 400 |
| HpyCH4IV | ACGT | 2 cut(s) | 330, 450 |
| HpyCH4V | TGCA | 1 cut(s) | 485 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 218, 320, 359, 556 |
| HpyF3I | CTNAG | 4 cut(s) | 217, 381, 521, 588 |
| HpySE526I | ACGT | 2 cut(s) | 330, 450 |
| Hsp92I | GRCGYC | 1 cut(s) | 468 |
| Hsp92II | CATG | 4 cut(s) | 94, 358, 445, 461 |
| HspAI | GCGC | 3 cut(s) | 4, 420, 468 |
| KasI | GGCGCC | 1 cut(s) | 467 |
| KflI | GGGWCCC | 1 cut(s) | 344 |
| Kzo9I | GATC | 1 cut(s) | 150 |
| LguI | GCTCTTC | 1 cut(s) | 258 |
| MaeI | CTAG | 3 cut(s) | 363, 411, 473 |
| MaeII | ACGT | 2 cut(s) | 330, 450 |
| MaeIII | GTNAC | 1 cut(s) | 86 |
| MalI | GATC | 1 cut(s) | 152 |
| MboI | GATC | 1 cut(s) | 150 |
| MboII | GAAGA | 5 cut(s) | 85, 201, 217, 272, 275 |
| MhlI | GDGCHC | 3 cut(s) | 14, 270, 389 |
| MluCI | AATT | 1 cut(s) | 45 |
| Mly113I | GGCGCC | 1 cut(s) | 468 |
| MmeI | TCCRAC | 1 cut(s) | 161 |
| MnlI | CCTC | 4 cut(s) | 91, 161, 403, 570 |
| MslI | CAYNNNNRTG | 3 cut(s) | 353, 459, 462 |
| MspI | CCGG | 1 cut(s) | 340 |
| MspR9I | CCNGG | 1 cut(s) | 341 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 218, 320, 359, 556 |
| NarI | GGCGCC | 1 cut(s) | 468 |
| NciI | CCSGG | 1 cut(s) | 341 |
| NcoI | CCATGG | 1 cut(s) | 441 |
| NdeII | GATC | 1 cut(s) | 150 |
| NlaIII | CATG | 4 cut(s) | 94, 358, 445, 461 |
| NlaIV | GGNNCC | 4 cut(s) | 345, 346, 388, 469 |
| NmuCI | GTSAC | 1 cut(s) | 86 |
| PceI | AGGCCT | 1 cut(s) | 526 |
| PciSI | GCTCTTC | 1 cut(s) | 258 |
| PfeI | GAWTC | 1 cut(s) | 336 |
| PluTI | GGCGCC | 1 cut(s) | 471 |
| PpuMI | RGGWCCY | 2 cut(s) | 122, 344 |
| PsiI | TTATAA | 1 cut(s) | 50 |
| Psp5II | RGGWCCY | 2 cut(s) | 122, 344 |
| PspFI | CCCAGC | 1 cut(s) | 222 |
| PspN4I | GGNNCC | 4 cut(s) | 345, 346, 388, 469 |
| PspPI | GGNCC | 2 cut(s) | 122, 344 |
| PspPPI | RGGWCCY | 2 cut(s) | 122, 344 |
| PstNI | CAGNNNCTG | 1 cut(s) | 373 |
| RsaI | GTAC | 1 cut(s) | 55 |
| RsaNI | GTAC | 1 cut(s) | 54 |
| RseI | CAYNNNNRTG | 3 cut(s) | 353, 459, 462 |
| SapI | GCTCTTC | 1 cut(s) | 258 |
| Sau3AI | GATC | 1 cut(s) | 150 |
| Sau96I | GGNCC | 2 cut(s) | 122, 344 |
| ScrFI | CCNGG | 1 cut(s) | 341 |
| SduI | GDGCHC | 3 cut(s) | 14, 270, 389 |
| SetI | ASST | 9 cut(s) | 127, 218, 291, 325, 333, 364, 382, 453, 478 |
| SfoI | GGCGCC | 1 cut(s) | 469 |
| SinI | GGWCC | 2 cut(s) | 122, 344 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 353, 459, 462 |
| SmlI | CTYRAG | 1 cut(s) | 7 |
| SmoI | CTYRAG | 1 cut(s) | 7 |
| Sse9I | AATT | 1 cut(s) | 45 |
| SseBI | AGGCCT | 1 cut(s) | 526 |
| SsiI | CCGC | 1 cut(s) | 390 |
| SspDI | GGCGCC | 1 cut(s) | 467 |
| SspMI | CTAG | 3 cut(s) | 363, 411, 473 |
| StuI | AGGCCT | 1 cut(s) | 526 |
| StyD4I | CCNGG | 1 cut(s) | 339 |
| StyI | CCWWGG | 3 cut(s) | 410, 441, 472 |
| TaiI | ACGT | 2 cut(s) | 333, 453 |
| TasI | AATT | 1 cut(s) | 45 |
| TatI | WGTACW | 1 cut(s) | 53 |
| TfiI | GAWTC | 1 cut(s) | 336 |
| TscAI | CASTG | 2 cut(s) | 285, 355 |
| TseFI | GTSAC | 1 cut(s) | 86 |
| Tsp45I | GTSAC | 1 cut(s) | 86 |
| TspGWI | ACGGA | 1 cut(s) | 385 |
| TspRI | CASTG | 2 cut(s) | 285, 355 |
| VpaK11BI | GGWCC | 2 cut(s) | 122, 344 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 77, 144, 413, 461 |
| XmaJI | CCTAGG | 2 cut(s) | 410, 472 |
| XspI | CTAG | 3 cut(s) | 363, 411, 473 |