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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 429, 587 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AciI | CCGC | 1 cut(s) | 106 |
| AclWI | GGATC | 5 cut(s) | 156, 296, 322, 366, 470 |
| AcoI | YGGCCR | 1 cut(s) | 574 |
| AcyI | GRCGYC | 2 cut(s) | 430, 588 |
| AgsI | TTSAA | 2 cut(s) | 121, 625 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 2 cut(s) | 307, 620 |
| AluI | AGCT | 2 cut(s) | 307, 620 |
| Alw21I | GWGCWC | 1 cut(s) | 309 |
| Alw26I | GTCTC | 3 cut(s) | 37, 241, 555 |
| AlwI | GGATC | 5 cut(s) | 156, 296, 322, 366, 470 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| AoxI | GGCC | 3 cut(s) | 171, 518, 574 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 150, 390 |
| AspLEI | GCGC | 3 cut(s) | 432, 590, 631 |
| BalI | TGGCCA | 1 cut(s) | 576 |
| BanI | GGYRCC | 2 cut(s) | 429, 587 |
| BanII | GRGCYC | 1 cut(s) | 309 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 1 cut(s) | 309 |
| BccI | CCATC | 4 cut(s) | 69, 87, 241, 615 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BcoDI | GTCTC | 3 cut(s) | 37, 241, 555 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BfoI | RGCGCY | 3 cut(s) | 433, 591, 632 |
| BmiI | GGNNCC | 2 cut(s) | 431, 589 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 2 cut(s) | 430, 588 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BshFI | GGCC | 3 cut(s) | 173, 520, 576 |
| BshNI | GGYRCC | 2 cut(s) | 429, 587 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 1 cut(s) | 309 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BsmAI | GTCTC | 3 cut(s) | 37, 241, 555 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| BsnI | GGCC | 3 cut(s) | 173, 520, 576 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 1 cut(s) | 309 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 6 cut(s) | 161, 189, 288, 314, 371, 475 |
| BspACI | CCGC | 1 cut(s) | 106 |
| BspANI | GGCC | 3 cut(s) | 173, 520, 576 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 2 cut(s) | 431, 589 |
| BspPI | GGATC | 5 cut(s) | 156, 296, 322, 366, 470 |
| BspT107I | GGYRCC | 2 cut(s) | 429, 587 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssMI | GATC | 6 cut(s) | 161, 189, 288, 314, 371, 475 |
| BssNI | GRCGYC | 2 cut(s) | 430, 588 |
| Bst6I | CTCTTC | 1 cut(s) | 529 |
| BstACI | GRCGYC | 2 cut(s) | 430, 588 |
| BstDEI | CTNAG | 4 cut(s) | 255, 420, 452, 684 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstEII | GGTNACC | 1 cut(s) | 503 |
| BstH2I | RGCGCY | 3 cut(s) | 433, 591, 632 |
| BstHHI | GCGC | 3 cut(s) | 432, 590, 631 |
| BstKTI | GATC | 6 cut(s) | 164, 192, 291, 317, 374, 478 |
| BstMAI | GTCTC | 3 cut(s) | 37, 241, 555 |
| BstMBI | GATC | 6 cut(s) | 161, 189, 288, 314, 371, 475 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 436, 626 |
| BstPI | GGTNACC | 1 cut(s) | 503 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstX2I | RGATCY | 3 cut(s) | 161, 314, 371 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 584 |
| BstYI | RGATCY | 3 cut(s) | 161, 314, 371 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuRI | GGCC | 3 cut(s) | 173, 520, 576 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 3 cut(s) | 432, 590, 631 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CviAII | CATG | 3 cut(s) | 302, 338, 578 |
| CviJI | RGCY | 8 cut(s) | 25, 102, 173, 307, 520, 576, 606, 620 |
| CviKI_1 | RGCY | 8 cut(s) | 25, 102, 173, 307, 520, 576, 606, 620 |
| DdeI | CTNAG | 4 cut(s) | 255, 420, 452, 684 |
| DinI | GGCGCC | 2 cut(s) | 431, 589 |
| DpnI | GATC | 6 cut(s) | 163, 191, 290, 316, 373, 477 |
| DpnII | GATC | 6 cut(s) | 161, 189, 288, 314, 371, 475 |
| EaeI | YGGCCR | 1 cut(s) | 574 |
| Eam1104I | CTCTTC | 1 cut(s) | 529 |
| EarI | CTCTTC | 1 cut(s) | 529 |
| Ecl136II | GAGCTC | 1 cut(s) | 307 |
| Eco24I | GRGCYC | 1 cut(s) | 309 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 1 cut(s) | 307 |
| Eco91I | GGTNACC | 1 cut(s) | 503 |
| EcoICRI | GAGCTC | 1 cut(s) | 307 |
| EcoO65I | GGTNACC | 1 cut(s) | 503 |
| EcoT38I | GRGCYC | 1 cut(s) | 309 |
| EgeI | GGCGCC | 2 cut(s) | 431, 589 |
| EheI | GGCGCC | 2 cut(s) | 431, 589 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FaeI | CATG | 3 cut(s) | 305, 341, 581 |
| FatI | CATG | 3 cut(s) | 301, 337, 577 |
| FriOI | GRGCYC | 1 cut(s) | 309 |
| FspBI | CTAG | 1 cut(s) | 83 |
| GlaI | GCGC | 3 cut(s) | 431, 589, 630 |
| HaeII | RGCGCY | 3 cut(s) | 433, 591, 632 |
| HaeIII | GGCC | 3 cut(s) | 173, 520, 576 |
| HapII | CCGG | 1 cut(s) | 395 |
| HhaI | GCGC | 3 cut(s) | 432, 590, 631 |
| Hin1I | GRCGYC | 2 cut(s) | 430, 588 |
| Hin1II | CATG | 3 cut(s) | 305, 341, 581 |
| Hin6I | GCGC | 3 cut(s) | 430, 588, 629 |
| HinP1I | GCGC | 3 cut(s) | 430, 588, 629 |
| HindIII | AAGCTT | 1 cut(s) | 618 |
| HinfI | GANTC | 3 cut(s) | 217, 267, 398 |
| HpaII | CCGG | 1 cut(s) | 395 |
| Hpy166II | GTNNAC | 1 cut(s) | 542 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 475 |
| Hpy188III | TCNNGA | 6 cut(s) | 77, 131, 302, 395, 465, 669 |
| Hpy8I | GTNNAC | 1 cut(s) | 542 |
| HpyAV | CCTTC | 4 cut(s) | 15, 184, 238, 494 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 544 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 281 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 436, 626 |
| HpyF3I | CTNAG | 4 cut(s) | 255, 420, 452, 684 |
| HpySE526I | ACGT | 2 cut(s) | 57, 544 |
| Hsp92I | GRCGYC | 2 cut(s) | 430, 588 |
| Hsp92II | CATG | 3 cut(s) | 305, 341, 581 |
| HspAI | GCGC | 3 cut(s) | 430, 588, 629 |
| KasI | GGCGCC | 2 cut(s) | 429, 587 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Kzo9I | GATC | 6 cut(s) | 161, 189, 288, 314, 371, 475 |
| LpnPI | CCDG | 5 cut(s) | 31, 90, 408, 450, 558 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeII | ACGT | 2 cut(s) | 57, 544 |
| MaeIII | GTNAC | 1 cut(s) | 503 |
| MalI | GATC | 6 cut(s) | 163, 191, 290, 316, 373, 477 |
| MboI | GATC | 6 cut(s) | 161, 189, 288, 314, 371, 475 |
| MboII | GAAGA | 5 cut(s) | 20, 23, 53, 226, 546 |
| MflI | RGATCY | 3 cut(s) | 161, 314, 371 |
| MhlI | GDGCHC | 1 cut(s) | 309 |
| MlsI | TGGCCA | 1 cut(s) | 576 |
| MluCI | AATT | 2 cut(s) | 364, 403 |
| MluNI | TGGCCA | 1 cut(s) | 576 |
| Mly113I | GGCGCC | 2 cut(s) | 430, 588 |
| MlyI | GAGTC | 1 cut(s) | 211 |
| MnlI | CCTC | 8 cut(s) | 113, 419, 427, 518, 530, 550, 580, 642 |
| Mox20I | TGGCCA | 1 cut(s) | 576 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MroXI | GAANNNNTTC | 2 cut(s) | 150, 390 |
| MscI | TGGCCA | 1 cut(s) | 576 |
| MseI | TTAA | 2 cut(s) | 167, 600 |
| MslI | CAYNNNNRTG | 2 cut(s) | 582, 612 |
| Msp20I | TGGCCA | 1 cut(s) | 576 |
| MspI | CCGG | 1 cut(s) | 395 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 436, 626 |
| NarI | GGCGCC | 2 cut(s) | 430, 588 |
| NdeII | GATC | 6 cut(s) | 161, 189, 288, 314, 371, 475 |
| NlaIII | CATG | 3 cut(s) | 305, 341, 581 |
| NlaIV | GGNNCC | 2 cut(s) | 431, 589 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PdmI | GAANNNNTTC | 2 cut(s) | 150, 390 |
| PfeI | GAWTC | 2 cut(s) | 267, 398 |
| PleI | GAGTC | 1 cut(s) | 211 |
| PluTI | GGCGCC | 2 cut(s) | 433, 591 |
| PpsI | GAGTC | 1 cut(s) | 211 |
| Psp124BI | GAGCTC | 1 cut(s) | 309 |
| PspEI | GGTNACC | 1 cut(s) | 503 |
| PspN4I | GGNNCC | 2 cut(s) | 431, 589 |
| PsuI | RGATCY | 3 cut(s) | 161, 314, 371 |
| RseI | CAYNNNNRTG | 2 cut(s) | 582, 612 |
| SacI | GAGCTC | 1 cut(s) | 309 |
| SaqAI | TTAA | 2 cut(s) | 167, 600 |
| Sau3AI | GATC | 6 cut(s) | 161, 189, 288, 314, 371, 475 |
| SchI | GAGTC | 1 cut(s) | 211 |
| SduI | GDGCHC | 1 cut(s) | 309 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SfoI | GGCGCC | 2 cut(s) | 431, 589 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 582, 612 |
| Sse9I | AATT | 2 cut(s) | 364, 403 |
| SsiI | CCGC | 1 cut(s) | 106 |
| SspDI | GGCGCC | 2 cut(s) | 429, 587 |
| SspMI | CTAG | 1 cut(s) | 83 |
| SstI | GAGCTC | 1 cut(s) | 309 |
| TaiI | ACGT | 2 cut(s) | 60, 547 |
| TaqI | TCGA | 5 cut(s) | 39, 265, 270, 648, 670 |
| TasI | AATT | 2 cut(s) | 364, 403 |
| TfiI | GAWTC | 2 cut(s) | 267, 398 |
| Tru1I | TTAA | 2 cut(s) | 167, 600 |
| Tru9I | TTAA | 2 cut(s) | 167, 600 |
| TspDTI | ATGAA | 5 cut(s) | 17, 21, 290, 335, 630 |
| TspGWI | ACGGA | 2 cut(s) | 301, 364 |
| XmnI | GAANNNNTTC | 2 cut(s) | 150, 390 |
| XspI | CTAG | 1 cut(s) | 83 |