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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 129 |
| AccI | GTMKAC | 1 cut(s) | 165 |
| AciI | CCGC | 4 cut(s) | 33, 71, 316, 598 |
| AcoI | YGGCCR | 1 cut(s) | 186 |
| AcsI | RAATTY | 2 cut(s) | 230, 665 |
| AcuI | CTGAAG | 1 cut(s) | 42 |
| AfaI | GTAC | 1 cut(s) | 485 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 184 |
| AflIII | ACRYGT | 1 cut(s) | 372 |
| AgsI | TTSAA | 2 cut(s) | 613, 704 |
| AjiI | CACGTC | 4 cut(s) | 89, 108, 128, 373 |
| AjnI | CCWGG | 2 cut(s) | 342, 366 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 525, 557 |
| AluBI | AGCT | 7 cut(s) | 62, 99, 204, 222, 361, 392, 398 |
| AluI | AGCT | 7 cut(s) | 62, 99, 204, 222, 361, 392, 398 |
| Alw26I | GTCTC | 2 cut(s) | 529, 733 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 116 |
| Ama87I | CYCGRG | 1 cut(s) | 49 |
| AoxI | GGCC | 2 cut(s) | 9, 186 |
| ApeKI | GCWGC | 2 cut(s) | 96, 416 |
| ApoI | RAATTY | 2 cut(s) | 230, 665 |
| AspLEI | GCGC | 2 cut(s) | 96, 115 |
| AspS9I | GGNCC | 1 cut(s) | 10 |
| AvaI | CYCGRG | 1 cut(s) | 49 |
| BbsI | GAAGAC | 1 cut(s) | 510 |
| BbvI | GCAGC | 2 cut(s) | 108, 428 |
| BccI | CCATC | 3 cut(s) | 452, 579, 733 |
| BceAI | ACGGC | 1 cut(s) | 201 |
| BciT130I | CCWGG | 2 cut(s) | 344, 368 |
| BcoDI | GTCTC | 2 cut(s) | 529, 733 |
| BfaI | CTAG | 2 cut(s) | 356, 575 |
| BfmI | CTRYAG | 2 cut(s) | 205, 223 |
| BfoI | RGCGCY | 1 cut(s) | 116 |
| BfuAI | ACCTGC | 1 cut(s) | 129 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 425 |
| BglII | AGATCT | 1 cut(s) | 79 |
| BisI | GCNGC | 4 cut(s) | 33, 71, 97, 417 |
| BlpI | GCTNAGC | 1 cut(s) | 362 |
| BlsI | GCNGC | 4 cut(s) | 34, 72, 98, 418 |
| Bme1390I | CCNGG | 2 cut(s) | 344, 368 |
| BmeT110I | CYCGRG | 1 cut(s) | 49 |
| BmgBI | CACGTC | 4 cut(s) | 89, 108, 128, 373 |
| BmgT120I | GGNCC | 1 cut(s) | 10 |
| BmrFI | CCNGG | 2 cut(s) | 344, 368 |
| BmrI | ACTGGG | 1 cut(s) | 281 |
| BmsI | GCATC | 2 cut(s) | 331, 679 |
| BmuI | ACTGGG | 1 cut(s) | 281 |
| BpiI | GAAGAC | 1 cut(s) | 510 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 362 |
| BpuEI | CTTGAG | 3 cut(s) | 311, 378, 464 |
| BsaI | GGTCTC | 1 cut(s) | 529 |
| BsaWI | WCCGGW | 1 cut(s) | 136 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 197, 227 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 184 |
| Bse118I | RCCGGY | 1 cut(s) | 146 |
| Bse1I | ACTGG | 2 cut(s) | 276, 286 |
| BseBI | CCWGG | 2 cut(s) | 344, 368 |
| BseGI | GGATG | 3 cut(s) | 243, 447, 475 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 184 |
| BseNI | ACTGG | 2 cut(s) | 276, 286 |
| BseXI | GCAGC | 2 cut(s) | 108, 428 |
| BseYI | CCCAGC | 1 cut(s) | 12 |
| BshFI | GGCC | 2 cut(s) | 11, 188 |
| BsiHKCI | CYCGRG | 1 cut(s) | 49 |
| BsiSI | CCGG | 2 cut(s) | 137, 147 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 184 |
| BsmAI | GTCTC | 2 cut(s) | 529, 733 |
| BsnI | GGCC | 2 cut(s) | 11, 188 |
| Bso31I | GGTCTC | 1 cut(s) | 529 |
| BsoBI | CYCGRG | 1 cut(s) | 49 |
| Bsp143I | GATC | 2 cut(s) | 79, 681 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 362 |
| BspACI | CCGC | 4 cut(s) | 33, 71, 316, 598 |
| BspANI | GGCC | 2 cut(s) | 11, 188 |
| BspMI | ACCTGC | 1 cut(s) | 129 |
| BspTNI | GGTCTC | 1 cut(s) | 529 |
| BsrFI | RCCGGY | 1 cut(s) | 146 |
| BsrI | ACTGG | 2 cut(s) | 276, 286 |
| BssAI | RCCGGY | 1 cut(s) | 146 |
| BssMI | GATC | 2 cut(s) | 79, 681 |
| Bst2UI | CCWGG | 2 cut(s) | 344, 368 |
| Bst4CI | ACNGT | 3 cut(s) | 209, 227, 382 |
| BstC8I | GCNNGC | 2 cut(s) | 320, 390 |
| BstDEI | CTNAG | 3 cut(s) | 362, 421, 747 |
| BstF5I | GGATG | 3 cut(s) | 243, 447, 475 |
| BstH2I | RGCGCY | 1 cut(s) | 116 |
| BstHHI | GCGC | 2 cut(s) | 96, 115 |
| BstKTI | GATC | 2 cut(s) | 82, 684 |
| BstMAI | GTCTC | 2 cut(s) | 529, 733 |
| BstMBI | GATC | 2 cut(s) | 79, 681 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 32, 91, 110, 121, 404, 413, 425 |
| BstNI | CCWGG | 2 cut(s) | 344, 368 |
| BstSCI | CCNGG | 2 cut(s) | 342, 366 |
| BstSFI | CTRYAG | 2 cut(s) | 205, 223 |
| BstV1I | GCAGC | 2 cut(s) | 108, 428 |
| BstV2I | GAAGAC | 1 cut(s) | 510 |
| BstX2I | RGATCY | 1 cut(s) | 79 |
| BstYI | RGATCY | 1 cut(s) | 79 |
| BsuRI | GGCC | 2 cut(s) | 11, 188 |
| BtgZI | GCGATG | 1 cut(s) | 707 |
| BtrI | CACGTC | 4 cut(s) | 89, 108, 128, 373 |
| BtsCI | GGATG | 3 cut(s) | 243, 447, 475 |
| BtsIMutI | CAGTG | 2 cut(s) | 232, 269 |
| BveI | ACCTGC | 1 cut(s) | 129 |
| Cac8I | GCNNGC | 2 cut(s) | 320, 390 |
| CaiI | CAGNNNCTG | 1 cut(s) | 116 |
| CfoI | GCGC | 2 cut(s) | 96, 115 |
| Cfr10I | RCCGGY | 1 cut(s) | 146 |
| Cfr13I | GGNCC | 1 cut(s) | 10 |
| Csp6I | GTAC | 1 cut(s) | 484 |
| CviQI | GTAC | 1 cut(s) | 484 |
| DdeI | CTNAG | 3 cut(s) | 362, 421, 747 |
| DpnI | GATC | 2 cut(s) | 81, 683 |
| DpnII | GATC | 2 cut(s) | 79, 681 |
| EaeI | YGGCCR | 1 cut(s) | 186 |
| EciI | GGCGGA | 1 cut(s) | 305 |
| Eco31I | GGTCTC | 1 cut(s) | 529 |
| Eco32I | GATATC | 2 cut(s) | 293, 313 |
| Eco57I | CTGAAG | 1 cut(s) | 42 |
| Eco88I | CYCGRG | 1 cut(s) | 49 |
| EcoRI | GAATTC | 1 cut(s) | 665 |
| EcoRII | CCWGG | 2 cut(s) | 342, 366 |
| EcoRV | GATATC | 2 cut(s) | 293, 313 |
| FaiI | YATR | 7 cut(s) | 350, 465, 467, 492, 494, 591, 630 |
| FauNDI | CATATG | 1 cut(s) | 465 |
| FblI | GTMKAC | 1 cut(s) | 165 |
| Fnu4HI | GCNGC | 4 cut(s) | 33, 71, 97, 417 |
| FokI | GGATG | 3 cut(s) | 250, 434, 482 |
| Fsp4HI | GCNGC | 4 cut(s) | 33, 71, 97, 417 |
| FspBI | CTAG | 2 cut(s) | 356, 575 |
| GlaI | GCGC | 2 cut(s) | 95, 114 |
| GluI | GCNGC | 4 cut(s) | 33, 71, 97, 417 |
| GsaI | CCCAGC | 1 cut(s) | 16 |
| HaeII | RGCGCY | 1 cut(s) | 116 |
| HaeIII | GGCC | 2 cut(s) | 11, 188 |
| HapII | CCGG | 2 cut(s) | 137, 147 |
| HhaI | GCGC | 2 cut(s) | 96, 115 |
| Hin6I | GCGC | 2 cut(s) | 94, 113 |
| HinP1I | GCGC | 2 cut(s) | 94, 113 |
| HincII | GTYRAC | 5 cut(s) | 131, 142, 152, 166, 378 |
| HindII | GTYRAC | 5 cut(s) | 131, 142, 152, 166, 378 |
| HindIII | AAGCTT | 1 cut(s) | 396 |
| HinfI | GANTC | 7 cut(s) | 339, 352, 457, 473, 557, 709, 758 |
| HpaI | GTTAAC | 1 cut(s) | 378 |
| HpaII | CCGG | 2 cut(s) | 137, 147 |
| Hpy166II | GTNNAC | 5 cut(s) | 131, 142, 152, 166, 378 |
| Hpy188I | TCNGA | 2 cut(s) | 175, 237 |
| Hpy188III | TCNNGA | 4 cut(s) | 308, 356, 569, 623 |
| Hpy8I | GTNNAC | 5 cut(s) | 131, 142, 152, 166, 378 |
| Hpy99I | CGWCG | 1 cut(s) | 167 |
| HpyAV | CCTTC | 2 cut(s) | 507, 730 |
| HpyCH4III | ACNGT | 3 cut(s) | 209, 227, 382 |
| HpyCH4IV | ACGT | 5 cut(s) | 88, 107, 127, 372, 549 |
| HpyCH4V | TGCA | 1 cut(s) | 734 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 32, 91, 110, 121, 404, 413, 425 |
| HpyF3I | CTNAG | 3 cut(s) | 362, 421, 747 |
| HpySE526I | ACGT | 5 cut(s) | 88, 107, 127, 372, 549 |
| HspAI | GCGC | 2 cut(s) | 94, 113 |
| KspAI | GTTAAC | 1 cut(s) | 378 |
| Kzo9I | GATC | 2 cut(s) | 79, 681 |
| LmnI | GCTCC | 1 cut(s) | 271 |
| Lsp1109I | GCAGC | 2 cut(s) | 108, 428 |
| LweI | GCATC | 2 cut(s) | 331, 679 |
| MaeI | CTAG | 2 cut(s) | 356, 575 |
| MaeII | ACGT | 5 cut(s) | 88, 107, 127, 372, 549 |
| MaeIII | GTNAC | 3 cut(s) | 209, 242, 554 |
| MalI | GATC | 2 cut(s) | 81, 683 |
| MboI | GATC | 2 cut(s) | 79, 681 |
| MboII | GAAGA | 3 cut(s) | 512, 515, 545 |
| MflI | RGATCY | 1 cut(s) | 79 |
| MluCI | AATT | 3 cut(s) | 230, 254, 665 |
| MlyI | GAGTC | 3 cut(s) | 451, 551, 703 |
| MmeI | TCCRAC | 2 cut(s) | 198, 240 |
| MnlI | CCTC | 4 cut(s) | 51, 144, 418, 605 |
| MseI | TTAA | 3 cut(s) | 377, 651, 659 |
| MslI | CAYNNNNRTG | 2 cut(s) | 452, 468 |
| MspI | CCGG | 2 cut(s) | 137, 147 |
| MspR9I | CCNGG | 2 cut(s) | 344, 368 |
| MvaI | CCWGG | 2 cut(s) | 344, 368 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 32, 91, 110, 121, 404, 413, 425 |
| NdeI | CATATG | 1 cut(s) | 465 |
| NdeII | GATC | 2 cut(s) | 79, 681 |
| NmuCI | GTSAC | 1 cut(s) | 554 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 171 |
| PfeI | GAWTC | 4 cut(s) | 339, 352, 473, 758 |
| PfoI | TCCNGGA | 1 cut(s) | 342 |
| PkrI | GCNGC | 4 cut(s) | 34, 72, 98, 418 |
| PleI | GAGTC | 3 cut(s) | 451, 551, 703 |
| PpsI | GAGTC | 3 cut(s) | 451, 551, 703 |
| Psp6I | CCWGG | 2 cut(s) | 342, 366 |
| PspFI | CCCAGC | 1 cut(s) | 12 |
| PspGI | CCWGG | 2 cut(s) | 342, 366 |
| PspPI | GGNCC | 1 cut(s) | 10 |
| PstNI | CAGNNNCTG | 1 cut(s) | 116 |
| PsuI | RGATCY | 1 cut(s) | 79 |
| RsaI | GTAC | 1 cut(s) | 485 |
| RsaNI | GTAC | 1 cut(s) | 484 |
| RseI | CAYNNNNRTG | 2 cut(s) | 452, 468 |
| SalI | GTCGAC | 1 cut(s) | 164 |
| SaqAI | TTAA | 3 cut(s) | 377, 651, 659 |
| SatI | GCNGC | 4 cut(s) | 33, 71, 97, 417 |
| Sau3AI | GATC | 2 cut(s) | 79, 681 |
| Sau96I | GGNCC | 1 cut(s) | 10 |
| SchI | GAGTC | 3 cut(s) | 451, 551, 703 |
| ScrFI | CCNGG | 2 cut(s) | 344, 368 |
| SfaNI | GCATC | 2 cut(s) | 331, 679 |
| SfcI | CTRYAG | 2 cut(s) | 205, 223 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 452, 468 |
| SmlI | CTYRAG | 3 cut(s) | 326, 393, 479 |
| SmoI | CTYRAG | 3 cut(s) | 326, 393, 479 |
| Sse9I | AATT | 3 cut(s) | 230, 254, 665 |
| SsiI | CCGC | 4 cut(s) | 33, 71, 316, 598 |
| SspMI | CTAG | 2 cut(s) | 356, 575 |
| StyD4I | CCNGG | 2 cut(s) | 342, 366 |
| TaaI | ACNGT | 3 cut(s) | 209, 227, 382 |
| TaiI | ACGT | 5 cut(s) | 91, 110, 130, 375, 552 |
| TaqI | TCGA | 4 cut(s) | 165, 531, 635, 756 |
| TasI | AATT | 3 cut(s) | 230, 254, 665 |
| TauI | GCSGC | 2 cut(s) | 35, 73 |
| TfiI | GAWTC | 4 cut(s) | 339, 352, 473, 758 |
| Tru1I | TTAA | 3 cut(s) | 377, 651, 659 |
| Tru9I | TTAA | 3 cut(s) | 377, 651, 659 |
| TscAI | CASTG | 2 cut(s) | 232, 276 |
| TseFI | GTSAC | 1 cut(s) | 554 |
| TseI | GCWGC | 2 cut(s) | 96, 416 |
| Tsp45I | GTSAC | 1 cut(s) | 554 |
| TspDTI | ATGAA | 2 cut(s) | 509, 513 |
| TspGWI | ACGGA | 2 cut(s) | 151, 542 |
| TspRI | CASTG | 2 cut(s) | 232, 276 |
| XapI | RAATTY | 2 cut(s) | 230, 665 |
| XbaI | TCTAGA | 1 cut(s) | 355 |
| XmiI | GTMKAC | 1 cut(s) | 165 |
| XspI | CTAG | 2 cut(s) | 356, 575 |