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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 891 |
| AccB1I | GGYRCC | 1 cut(s) | 1004 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 225 |
| AccIII | TCCGGA | 1 cut(s) | 200 |
| AciI | CCGC | 3 cut(s) | 106, 523, 1146 |
| AclWI | GGATC | 2 cut(s) | 79, 251 |
| AcoI | YGGCCR | 2 cut(s) | 145, 991 |
| AfaI | GTAC | 1 cut(s) | 410 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 150, 200, 225, 842 |
| AflIII | ACRYGT | 1 cut(s) | 411 |
| AgsI | TTSAA | 7 cut(s) | 8, 26, 46, 76, 328, 538, 1042 |
| AjiI | CACGTC | 1 cut(s) | 298 |
| AjnI | CCWGG | 1 cut(s) | 291 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 450, 482 |
| AluBI | AGCT | 9 cut(s) | 14, 157, 276, 317, 323, 724, 1023, 1127, 1178 |
| AluI | AGCT | 9 cut(s) | 14, 157, 276, 317, 323, 724, 1023, 1127, 1178 |
| Alw21I | GWGCWC | 1 cut(s) | 726 |
| Alw26I | GTCTC | 2 cut(s) | 63, 454 |
| AlwI | GGATC | 2 cut(s) | 79, 251 |
| Aor13HI | TCCGGA | 1 cut(s) | 200 |
| AoxI | GGCC | 4 cut(s) | 107, 145, 847, 991 |
| ApeKI | GCWGC | 1 cut(s) | 341 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 567 |
| AspS9I | GGNCC | 4 cut(s) | 108, 203, 847, 893 |
| AsuHPI | GGTGA | 2 cut(s) | 183, 1135 |
| AvaII | GGWCC | 2 cut(s) | 203, 893 |
| BaeGI | GKGCMC | 1 cut(s) | 1114 |
| BalI | TGGCCA | 1 cut(s) | 993 |
| BanI | GGYRCC | 1 cut(s) | 1004 |
| BanII | GRGCYC | 1 cut(s) | 726 |
| BbsI | GAAGAC | 2 cut(s) | 435, 638 |
| Bbv12I | GWGCWC | 1 cut(s) | 726 |
| BbvI | GCAGC | 1 cut(s) | 353 |
| BccI | CCATC | 6 cut(s) | 191, 202, 377, 504, 658, 659 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 677, 711 |
| BciT130I | CCWGG | 1 cut(s) | 293 |
| BclI | TGATCA | 1 cut(s) | 1102 |
| BcoDI | GTCTC | 2 cut(s) | 63, 454 |
| BfaI | CTAG | 1 cut(s) | 273 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 350 |
| BisI | GCNGC | 2 cut(s) | 107, 342 |
| BlsI | GCNGC | 2 cut(s) | 108, 343 |
| Bme1390I | CCNGG | 1 cut(s) | 293 |
| Bme18I | GGWCC | 2 cut(s) | 203, 893 |
| BmgBI | CACGTC | 1 cut(s) | 298 |
| BmgT120I | GGNCC | 4 cut(s) | 108, 203, 847, 893 |
| BmiI | GGNNCC | 4 cut(s) | 110, 848, 947, 1006 |
| BmrFI | CCNGG | 1 cut(s) | 293 |
| BpiI | GAAGAC | 2 cut(s) | 435, 638 |
| BpmI | CTGGAG | 1 cut(s) | 389 |
| BpuEI | CTTGAG | 2 cut(s) | 101, 303 |
| Bsa29I | ATCGAT | 1 cut(s) | 687 |
| BsaAI | YACGTR | 1 cut(s) | 412 |
| BsaI | GGTCTC | 1 cut(s) | 454 |
| BsaWI | WCCGGW | 2 cut(s) | 150, 200 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 150, 200, 225, 842 |
| Bse118I | RCCGGY | 2 cut(s) | 102, 143 |
| Bse1I | ACTGG | 1 cut(s) | 406 |
| Bse3DI | GCAATG | 1 cut(s) | 988 |
| BseAI | TCCGGA | 1 cut(s) | 200 |
| BseBI | CCWGG | 1 cut(s) | 293 |
| BseCI | ATCGAT | 1 cut(s) | 687 |
| BseGI | GGATG | 5 cut(s) | 234, 372, 400, 423, 762 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 150, 200, 225, 842 |
| BseMI | GCAATG | 1 cut(s) | 988 |
| BseNI | ACTGG | 1 cut(s) | 406 |
| BseSI | GKGCMC | 1 cut(s) | 1114 |
| BseXI | GCAGC | 1 cut(s) | 353 |
| BshFI | GGCC | 4 cut(s) | 109, 147, 849, 993 |
| BshNI | GGYRCC | 1 cut(s) | 1004 |
| BshVI | ATCGAT | 1 cut(s) | 687 |
| BsiHKAI | GWGCWC | 1 cut(s) | 726 |
| BsiSI | CCGG | 4 cut(s) | 103, 144, 151, 201 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 150, 200, 225, 842 |
| BsmAI | GTCTC | 2 cut(s) | 63, 454 |
| BsnI | GGCC | 4 cut(s) | 109, 147, 849, 993 |
| Bso31I | GGTCTC | 1 cut(s) | 454 |
| Bsp1286I | GDGCHC | 2 cut(s) | 726, 1114 |
| Bsp13I | TCCGGA | 1 cut(s) | 200 |
| Bsp143I | GATC | 5 cut(s) | 84, 256, 788, 1102, 1198 |
| BspACI | CCGC | 3 cut(s) | 106, 523, 1146 |
| BspANI | GGCC | 4 cut(s) | 109, 147, 849, 993 |
| BspDI | ATCGAT | 1 cut(s) | 687 |
| BspEI | TCCGGA | 1 cut(s) | 200 |
| BspHI | TCATGA | 1 cut(s) | 718 |
| BspLI | GGNNCC | 4 cut(s) | 110, 848, 947, 1006 |
| BspPI | GGATC | 2 cut(s) | 79, 251 |
| BspT107I | GGYRCC | 1 cut(s) | 1004 |
| BspTNI | GGTCTC | 1 cut(s) | 454 |
| BsrDI | GCAATG | 1 cut(s) | 988 |
| BsrFI | RCCGGY | 2 cut(s) | 102, 143 |
| BsrI | ACTGG | 1 cut(s) | 406 |
| BssAI | RCCGGY | 2 cut(s) | 102, 143 |
| BssMI | GATC | 5 cut(s) | 84, 256, 788, 1102, 1198 |
| Bst2UI | CCWGG | 1 cut(s) | 293 |
| Bst4CI | ACNGT | 1 cut(s) | 307 |
| Bst6I | CTCTTC | 1 cut(s) | 946 |
| BstBAI | YACGTR | 1 cut(s) | 412 |
| BstC8I | GCNNGC | 1 cut(s) | 315 |
| BstDEI | CTNAG | 3 cut(s) | 499, 869, 1017 |
| BstF5I | GGATG | 5 cut(s) | 234, 372, 400, 423, 762 |
| BstKTI | GATC | 5 cut(s) | 87, 259, 791, 1105, 1201 |
| BstMAI | GTCTC | 2 cut(s) | 63, 454 |
| BstMBI | GATC | 5 cut(s) | 84, 256, 788, 1102, 1198 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 329, 338, 350, 359, 1154, 1175 |
| BstNI | CCWGG | 1 cut(s) | 293 |
| BstSCI | CCNGG | 1 cut(s) | 291 |
| BstSLI | GKGCMC | 1 cut(s) | 1114 |
| BstV1I | GCAGC | 1 cut(s) | 353 |
| BstV2I | GAAGAC | 2 cut(s) | 435, 638 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1001 |
| Bsu15I | ATCGAT | 1 cut(s) | 687 |
| BsuRI | GGCC | 4 cut(s) | 109, 147, 849, 993 |
| BsuTUI | ATCGAT | 1 cut(s) | 687 |
| BtrI | CACGTC | 1 cut(s) | 298 |
| BtsCI | GGATG | 5 cut(s) | 234, 372, 400, 423, 762 |
| Cac8I | GCNNGC | 1 cut(s) | 315 |
| CciI | TCATGA | 1 cut(s) | 718 |
| Cfr10I | RCCGGY | 2 cut(s) | 102, 143 |
| Cfr13I | GGNCC | 4 cut(s) | 108, 203, 847, 893 |
| ClaI | ATCGAT | 1 cut(s) | 687 |
| CseI | GACGC | 1 cut(s) | 1043 |
| Csp6I | GTAC | 1 cut(s) | 409 |
| CviAII | CATG | 3 cut(s) | 719, 755, 995 |
| CviQI | GTAC | 1 cut(s) | 409 |
| DdeI | CTNAG | 3 cut(s) | 499, 869, 1017 |
| DpnI | GATC | 5 cut(s) | 86, 258, 790, 1104, 1200 |
| DpnII | GATC | 5 cut(s) | 84, 256, 788, 1102, 1198 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 891 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 891 |
| EaeI | YGGCCR | 2 cut(s) | 145, 991 |
| Eam1104I | CTCTTC | 1 cut(s) | 946 |
| EarI | CTCTTC | 1 cut(s) | 946 |
| Ecl136II | GAGCTC | 1 cut(s) | 724 |
| Eco24I | GRGCYC | 1 cut(s) | 726 |
| Eco31I | GGTCTC | 1 cut(s) | 454 |
| Eco47I | GGWCC | 2 cut(s) | 203, 893 |
| Eco53kI | GAGCTC | 1 cut(s) | 724 |
| EcoICRI | GAGCTC | 1 cut(s) | 724 |
| EcoRII | CCWGG | 1 cut(s) | 291 |
| EcoT38I | GRGCYC | 1 cut(s) | 726 |
| FaeI | CATG | 3 cut(s) | 722, 758, 998 |
| FatI | CATG | 3 cut(s) | 718, 754, 994 |
| FauNDI | CATATG | 1 cut(s) | 390 |
| FbaI | TGATCA | 1 cut(s) | 1102 |
| Fnu4HI | GCNGC | 2 cut(s) | 107, 342 |
| FokI | GGATG | 5 cut(s) | 241, 359, 407, 430, 749 |
| FriOI | GRGCYC | 1 cut(s) | 726 |
| Fsp4HI | GCNGC | 2 cut(s) | 107, 342 |
| FspBI | CTAG | 1 cut(s) | 273 |
| GluI | GCNGC | 2 cut(s) | 107, 342 |
| GsuI | CTGGAG | 1 cut(s) | 389 |
| HaeIII | GGCC | 4 cut(s) | 109, 147, 849, 993 |
| HapII | CCGG | 4 cut(s) | 103, 144, 151, 201 |
| HgaI | GACGC | 1 cut(s) | 1043 |
| Hin1II | CATG | 3 cut(s) | 722, 758, 998 |
| HindIII | AAGCTT | 1 cut(s) | 321 |
| HinfI | GANTC | 9 cut(s) | 4, 26, 382, 398, 482, 634, 684, 705, 815 |
| HpaII | CCGG | 4 cut(s) | 103, 144, 151, 201 |
| HphI | GGTGA | 2 cut(s) | 183, 1135 |
| Hpy166II | GTNNAC | 2 cut(s) | 191, 959 |
| Hpy188I | TCNGA | 5 cut(s) | 31, 99, 130, 562, 1102 |
| Hpy8I | GTNNAC | 2 cut(s) | 191, 959 |
| HpyAV | CCTTC | 2 cut(s) | 432, 911 |
| HpyCH4III | ACNGT | 1 cut(s) | 307 |
| HpyCH4IV | ACGT | 5 cut(s) | 297, 411, 474, 886, 961 |
| HpyCH4V | TGCA | 3 cut(s) | 659, 671, 698 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 329, 338, 350, 359, 1154, 1175 |
| HpyF3I | CTNAG | 3 cut(s) | 499, 869, 1017 |
| HpySE526I | ACGT | 5 cut(s) | 297, 411, 474, 886, 961 |
| Hsp92II | CATG | 3 cut(s) | 722, 758, 998 |
| Kpn2I | TCCGGA | 1 cut(s) | 200 |
| Ksp22I | TGATCA | 1 cut(s) | 1102 |
| Kzo9I | GATC | 5 cut(s) | 84, 256, 788, 1102, 1198 |
| LmnI | GCTCC | 3 cut(s) | 162, 408, 836 |
| Lsp1109I | GCAGC | 1 cut(s) | 353 |
| MaeI | CTAG | 1 cut(s) | 273 |
| MaeII | ACGT | 5 cut(s) | 297, 411, 474, 886, 961 |
| MaeIII | GTNAC | 4 cut(s) | 233, 479, 691, 1141 |
| MalI | GATC | 5 cut(s) | 86, 258, 790, 1104, 1200 |
| MboI | GATC | 5 cut(s) | 84, 256, 788, 1102, 1198 |
| MhlI | GDGCHC | 2 cut(s) | 726, 1114 |
| MlsI | TGGCCA | 1 cut(s) | 993 |
| MluCI | AATT | 6 cut(s) | 210, 221, 590, 781, 820, 1137 |
| MluNI | TGGCCA | 1 cut(s) | 993 |
| MlyI | GAGTC | 3 cut(s) | 376, 476, 628 |
| MmeI | TCCRAC | 1 cut(s) | 108 |
| Mox20I | TGGCCA | 1 cut(s) | 993 |
| MroI | TCCGGA | 1 cut(s) | 200 |
| MroXI | GAANNNNTTC | 1 cut(s) | 567 |
| MscI | TGGCCA | 1 cut(s) | 993 |
| MseI | TTAA | 3 cut(s) | 576, 584, 864 |
| MslI | CAYNNNNRTG | 4 cut(s) | 377, 393, 767, 999 |
| Msp20I | TGGCCA | 1 cut(s) | 993 |
| MspI | CCGG | 4 cut(s) | 103, 144, 151, 201 |
| MspR9I | CCNGG | 1 cut(s) | 293 |
| MvaI | CCWGG | 1 cut(s) | 293 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 329, 338, 350, 359, 1154, 1175 |
| NdeI | CATATG | 1 cut(s) | 390 |
| NdeII | GATC | 5 cut(s) | 84, 256, 788, 1102, 1198 |
| NlaIII | CATG | 3 cut(s) | 722, 758, 998 |
| NlaIV | GGNNCC | 4 cut(s) | 110, 848, 947, 1006 |
| NmuCI | GTSAC | 2 cut(s) | 479, 1141 |
| PagI | TCATGA | 1 cut(s) | 718 |
| PdmI | GAANNNNTTC | 1 cut(s) | 567 |
| PfeI | GAWTC | 6 cut(s) | 4, 26, 398, 684, 705, 815 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 225 |
| PkrI | GCNGC | 2 cut(s) | 108, 343 |
| PleI | GAGTC | 3 cut(s) | 376, 476, 628 |
| PpsI | GAGTC | 3 cut(s) | 376, 476, 628 |
| Ppu21I | YACGTR | 1 cut(s) | 412 |
| Psp124BI | GAGCTC | 1 cut(s) | 726 |
| Psp6I | CCWGG | 1 cut(s) | 291 |
| PspGI | CCWGG | 1 cut(s) | 291 |
| PspN4I | GGNNCC | 4 cut(s) | 110, 848, 947, 1006 |
| PspPI | GGNCC | 4 cut(s) | 108, 203, 847, 893 |
| RsaI | GTAC | 1 cut(s) | 410 |
| RsaNI | GTAC | 1 cut(s) | 409 |
| RseI | CAYNNNNRTG | 4 cut(s) | 377, 393, 767, 999 |
| SacI | GAGCTC | 1 cut(s) | 726 |
| SaqAI | TTAA | 3 cut(s) | 576, 584, 864 |
| SatI | GCNGC | 2 cut(s) | 107, 342 |
| Sau3AI | GATC | 5 cut(s) | 84, 256, 788, 1102, 1198 |
| Sau96I | GGNCC | 4 cut(s) | 108, 203, 847, 893 |
| SchI | GAGTC | 3 cut(s) | 376, 476, 628 |
| ScrFI | CCNGG | 1 cut(s) | 293 |
| SduI | GDGCHC | 2 cut(s) | 726, 1114 |
| SinI | GGWCC | 2 cut(s) | 203, 893 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 377, 393, 767, 999 |
| SmlI | CTYRAG | 2 cut(s) | 116, 318 |
| SmoI | CTYRAG | 2 cut(s) | 116, 318 |
| Sse9I | AATT | 6 cut(s) | 210, 221, 590, 781, 820, 1137 |
| SsiI | CCGC | 3 cut(s) | 106, 523, 1146 |
| SspI | AATATT | 1 cut(s) | 179 |
| SspMI | CTAG | 1 cut(s) | 273 |
| SstI | GAGCTC | 1 cut(s) | 726 |
| StyD4I | CCNGG | 1 cut(s) | 291 |
| TaaI | ACNGT | 1 cut(s) | 307 |
| TaiI | ACGT | 5 cut(s) | 300, 414, 477, 889, 964 |
| TaqI | TCGA | 7 cut(s) | 83, 456, 682, 687, 785, 1059, 1087 |
| TasI | AATT | 6 cut(s) | 210, 221, 590, 781, 820, 1137 |
| TauI | GCSGC | 1 cut(s) | 109 |
| TfiI | GAWTC | 6 cut(s) | 4, 26, 398, 684, 705, 815 |
| Tru1I | TTAA | 3 cut(s) | 576, 584, 864 |
| Tru9I | TTAA | 3 cut(s) | 576, 584, 864 |
| TseFI | GTSAC | 2 cut(s) | 479, 1141 |
| TseI | GCWGC | 1 cut(s) | 341 |
| Tsp45I | GTSAC | 2 cut(s) | 479, 1141 |
| TspDTI | ATGAA | 4 cut(s) | 434, 438, 707, 752 |
| TspGWI | ACGGA | 2 cut(s) | 467, 958 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 225 |
| VpaK11BI | GGWCC | 2 cut(s) | 203, 893 |
| XmnI | GAANNNNTTC | 1 cut(s) | 567 |
| XspI | CTAG | 1 cut(s) | 273 |