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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 390, 435 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 498 |
| AccBSI | CCGCTC | 1 cut(s) | 463 |
| AccI | GTMKAC | 1 cut(s) | 672 |
| AciI | CCGC | 1 cut(s) | 463 |
| AclWI | GGATC | 1 cut(s) | 323 |
| AcoI | YGGCCR | 1 cut(s) | 598 |
| AcsI | RAATTY | 1 cut(s) | 91 |
| AcvI | CACGTG | 1 cut(s) | 554 |
| AcyI | GRCGYC | 2 cut(s) | 612, 705 |
| AdeI | CACNNNGTG | 1 cut(s) | 557 |
| AfaI | GTAC | 2 cut(s) | 26, 550 |
| AfeI | AGCGCT | 1 cut(s) | 63 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 449, 450, 520, 573, 626, 627 |
| AflIII | ACRYGT | 2 cut(s) | 493, 551 |
| AgsI | TTSAA | 3 cut(s) | 112, 396, 730 |
| AjiI | CACGTC | 1 cut(s) | 494 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AleI | CACNNNNGTG | 1 cut(s) | 377 |
| AluBI | AGCT | 5 cut(s) | 176, 232, 334, 356, 734 |
| AluI | AGCT | 5 cut(s) | 176, 232, 334, 356, 734 |
| Alw21I | GWGCWC | 1 cut(s) | 750 |
| Alw44I | GTGCAC | 1 cut(s) | 746 |
| AlwI | GGATC | 1 cut(s) | 323 |
| Aor51HI | AGCGCT | 1 cut(s) | 63 |
| AoxI | GGCC | 1 cut(s) | 598 |
| ApaLI | GTGCAC | 1 cut(s) | 746 |
| ApeKI | GCWGC | 1 cut(s) | 758 |
| ApoI | RAATTY | 1 cut(s) | 91 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| AspLEI | GCGC | 1 cut(s) | 64 |
| AspS9I | GGNCC | 2 cut(s) | 500, 652 |
| AsuHPI | GGTGA | 2 cut(s) | 706, 710 |
| AvaII | GGWCC | 2 cut(s) | 500, 652 |
| AxyI | CCTNAGG | 1 cut(s) | 656 |
| BaeGI | GKGCMC | 2 cut(s) | 456, 750 |
| BauI | CACGAG | 2 cut(s) | 319, 377 |
| BbrPI | CACGTG | 1 cut(s) | 554 |
| BbsI | GAAGAC | 1 cut(s) | 708 |
| Bbv12I | GWGCWC | 1 cut(s) | 750 |
| BbvI | GCAGC | 1 cut(s) | 745 |
| BccI | CCATC | 3 cut(s) | 269, 306, 689 |
| BceAI | ACGGC | 1 cut(s) | 585 |
| BfaI | CTAG | 1 cut(s) | 65 |
| BfmI | CTRYAG | 2 cut(s) | 624, 759 |
| BfoI | RGCGCY | 1 cut(s) | 65 |
| BisI | GCNGC | 1 cut(s) | 759 |
| BlsI | GCNGC | 1 cut(s) | 760 |
| Bme18I | GGWCC | 2 cut(s) | 500, 652 |
| BmgBI | CACGTC | 1 cut(s) | 494 |
| BmgT120I | GGNCC | 2 cut(s) | 500, 652 |
| BmiI | GGNNCC | 3 cut(s) | 467, 501, 653 |
| BmsI | GCATC | 1 cut(s) | 745 |
| BpiI | GAAGAC | 1 cut(s) | 708 |
| BpmI | CTGGAG | 1 cut(s) | 756 |
| BsaAI | YACGTR | 1 cut(s) | 554 |
| BsaHI | GRCGYC | 2 cut(s) | 612, 705 |
| BsaJI | CCNNGG | 1 cut(s) | 601 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 568, 598, 729, 759 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 449, 450, 520, 573, 626, 627 |
| Bse118I | RCCGGY | 1 cut(s) | 596 |
| Bse21I | CCTNAGG | 1 cut(s) | 656 |
| Bse3DI | GCAATG | 2 cut(s) | 88, 568 |
| BseDI | CCNNGG | 1 cut(s) | 601 |
| BseGI | GGATG | 2 cut(s) | 317, 760 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 449, 450, 520, 573, 626, 627 |
| BseMI | GCAATG | 2 cut(s) | 88, 568 |
| BseMII | CTCAG | 3 cut(s) | 279, 348, 647 |
| BseRI | GAGGAG | 1 cut(s) | 89 |
| BseSI | GKGCMC | 2 cut(s) | 456, 750 |
| BseX3I | CGGCCG | 1 cut(s) | 598 |
| BseXI | GCAGC | 1 cut(s) | 745 |
| Bsh1285I | CGRYCG | 1 cut(s) | 601 |
| BshFI | GGCC | 1 cut(s) | 600 |
| BsiEI | CGRYCG | 1 cut(s) | 601 |
| BsiHKAI | GWGCWC | 1 cut(s) | 750 |
| BsiSI | CCGG | 1 cut(s) | 597 |
| BslFI | GGGAC | 2 cut(s) | 495, 665 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 449, 450, 520, 573, 626, 627 |
| BsmFI | GGGAC | 2 cut(s) | 495, 665 |
| BsnI | GGCC | 1 cut(s) | 600 |
| Bsp1286I | GDGCHC | 2 cut(s) | 456, 750 |
| Bsp143I | GATC | 2 cut(s) | 33, 315 |
| BspACI | CCGC | 1 cut(s) | 463 |
| BspANI | GGCC | 1 cut(s) | 600 |
| BspCNI | CTCAG | 3 cut(s) | 278, 349, 648 |
| BspHI | TCATGA | 1 cut(s) | 421 |
| BspLI | GGNNCC | 3 cut(s) | 467, 501, 653 |
| BspMAI | CTGCAG | 1 cut(s) | 763 |
| BspPI | GGATC | 1 cut(s) | 323 |
| BspQI | GCTCTTC | 2 cut(s) | 63, 183 |
| BsrBI | CCGCTC | 1 cut(s) | 463 |
| BsrDI | GCAATG | 2 cut(s) | 88, 568 |
| BsrFI | RCCGGY | 1 cut(s) | 596 |
| BssAI | RCCGGY | 1 cut(s) | 596 |
| BssECI | CCNNGG | 1 cut(s) | 601 |
| BssMI | GATC | 2 cut(s) | 33, 315 |
| BssNI | GRCGYC | 2 cut(s) | 612, 705 |
| BssSI | CACGAG | 2 cut(s) | 319, 377 |
| Bst2BI | CACGAG | 2 cut(s) | 319, 377 |
| Bst4CI | ACNGT | 1 cut(s) | 154 |
| Bst6I | CTCTTC | 2 cut(s) | 63, 183 |
| BstACI | GRCGYC | 2 cut(s) | 612, 705 |
| BstBAI | YACGTR | 1 cut(s) | 554 |
| BstC8I | GCNNGC | 1 cut(s) | 598 |
| BstDEI | CTNAG | 5 cut(s) | 265, 357, 411, 471, 656 |
| BstDSI | CCRYGG | 1 cut(s) | 601 |
| BstEII | GGTNACC | 1 cut(s) | 527 |
| BstF5I | GGATG | 2 cut(s) | 317, 760 |
| BstH2I | RGCGCY | 1 cut(s) | 65 |
| BstHHI | GCGC | 1 cut(s) | 64 |
| BstKTI | GATC | 2 cut(s) | 36, 318 |
| BstMBI | GATC | 2 cut(s) | 33, 315 |
| BstMCI | CGRYCG | 1 cut(s) | 601 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 70, 460, 597, 641 |
| BstPI | GGTNACC | 1 cut(s) | 527 |
| BstSFI | CTRYAG | 2 cut(s) | 624, 759 |
| BstSLI | GKGCMC | 2 cut(s) | 456, 750 |
| BstV1I | GCAGC | 1 cut(s) | 745 |
| BstV2I | GAAGAC | 1 cut(s) | 708 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 539 |
| BstZI | CGGCCG | 1 cut(s) | 598 |
| Bsu36I | CCTNAGG | 1 cut(s) | 656 |
| BsuRI | GGCC | 1 cut(s) | 600 |
| BtgI | CCRYGG | 1 cut(s) | 601 |
| BtrI | CACGTC | 1 cut(s) | 494 |
| BtsCI | GGATG | 2 cut(s) | 317, 760 |
| BtsI | GCAGTG | 1 cut(s) | 591 |
| BtsIMutI | CAGTG | 1 cut(s) | 591 |
| Cac8I | GCNNGC | 1 cut(s) | 598 |
| CciI | TCATGA | 1 cut(s) | 421 |
| CfoI | GCGC | 1 cut(s) | 64 |
| Cfr10I | RCCGGY | 1 cut(s) | 596 |
| Cfr13I | GGNCC | 2 cut(s) | 500, 652 |
| CseI | GACGC | 2 cut(s) | 601, 713 |
| Csp6I | GTAC | 2 cut(s) | 25, 549 |
| CviAII | CATG | 4 cut(s) | 28, 365, 422, 572 |
| CviJI | RGCY | 7 cut(s) | 158, 176, 232, 334, 356, 600, 734 |
| CviKI_1 | RGCY | 7 cut(s) | 158, 176, 232, 334, 356, 600, 734 |
| CviQI | GTAC | 2 cut(s) | 25, 549 |
| DdeI | CTNAG | 5 cut(s) | 265, 357, 411, 471, 656 |
| DpnI | GATC | 2 cut(s) | 35, 317 |
| DpnII | GATC | 2 cut(s) | 33, 315 |
| DraI | TTTAAA | 1 cut(s) | 148 |
| DraIII | CACNNNGTG | 1 cut(s) | 557 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 498 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 498 |
| EaeI | YGGCCR | 1 cut(s) | 598 |
| EagI | CGGCCG | 1 cut(s) | 598 |
| Eam1104I | CTCTTC | 2 cut(s) | 63, 183 |
| EarI | CTCTTC | 2 cut(s) | 63, 183 |
| EclXI | CGGCCG | 1 cut(s) | 598 |
| Eco47I | GGWCC | 2 cut(s) | 500, 652 |
| Eco47III | AGCGCT | 1 cut(s) | 63 |
| Eco52I | CGGCCG | 1 cut(s) | 598 |
| Eco72I | CACGTG | 1 cut(s) | 554 |
| Eco81I | CCTNAGG | 1 cut(s) | 656 |
| Eco91I | GGTNACC | 1 cut(s) | 527 |
| EcoO109I | RGGNCCY | 1 cut(s) | 652 |
| EcoO65I | GGTNACC | 1 cut(s) | 527 |
| EcoT22I | ATGCAT | 1 cut(s) | 646 |
| FaeI | CATG | 4 cut(s) | 31, 368, 425, 575 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 660, 692 |
| FaqI | GGGAC | 2 cut(s) | 495, 665 |
| FatI | CATG | 4 cut(s) | 27, 364, 421, 571 |
| FblI | GTMKAC | 1 cut(s) | 672 |
| Fnu4HI | GCNGC | 1 cut(s) | 759 |
| FokI | GGATG | 2 cut(s) | 324, 767 |
| Fsp4HI | GCNGC | 1 cut(s) | 759 |
| FspBI | CTAG | 1 cut(s) | 65 |
| GlaI | GCGC | 1 cut(s) | 63 |
| GluI | GCNGC | 1 cut(s) | 759 |
| GsuI | CTGGAG | 1 cut(s) | 756 |
| HaeII | RGCGCY | 1 cut(s) | 65 |
| HaeIII | GGCC | 1 cut(s) | 600 |
| HapII | CCGG | 1 cut(s) | 597 |
| HgaI | GACGC | 2 cut(s) | 601, 713 |
| HhaI | GCGC | 1 cut(s) | 64 |
| Hin1I | GRCGYC | 2 cut(s) | 612, 705 |
| Hin1II | CATG | 4 cut(s) | 31, 368, 425, 575 |
| Hin6I | GCGC | 1 cut(s) | 62 |
| HinP1I | GCGC | 1 cut(s) | 62 |
| HincII | GTYRAC | 1 cut(s) | 616 |
| HindII | GTYRAC | 1 cut(s) | 616 |
| HpaII | CCGG | 1 cut(s) | 597 |
| HphI | GGTGA | 2 cut(s) | 706, 710 |
| Hpy166II | GTNNAC | 5 cut(s) | 209, 551, 616, 673, 748 |
| Hpy188I | TCNGA | 3 cut(s) | 38, 172, 221 |
| Hpy188III | TCNNGA | 4 cut(s) | 140, 319, 379, 422 |
| Hpy8I | GTNNAC | 5 cut(s) | 209, 551, 616, 673, 748 |
| HpyAV | CCTTC | 2 cut(s) | 265, 518 |
| HpyCH4III | ACNGT | 1 cut(s) | 154 |
| HpyCH4IV | ACGT | 2 cut(s) | 493, 553 |
| HpyCH4V | TGCA | 5 cut(s) | 226, 440, 644, 748, 761 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 70, 460, 597, 641 |
| HpyF3I | CTNAG | 5 cut(s) | 265, 357, 411, 471, 656 |
| HpySE526I | ACGT | 2 cut(s) | 493, 553 |
| Hsp92I | GRCGYC | 2 cut(s) | 612, 705 |
| Hsp92II | CATG | 4 cut(s) | 31, 368, 425, 575 |
| HspAI | GCGC | 1 cut(s) | 62 |
| KroI | GCCGGC | 1 cut(s) | 596 |
| KroNI | GCCGGC | 1 cut(s) | 598 |
| Kzo9I | GATC | 2 cut(s) | 33, 315 |
| LguI | GCTCTTC | 2 cut(s) | 63, 183 |
| LmnI | GCTCC | 2 cut(s) | 123, 661 |
| LpnPI | CCDG | 6 cut(s) | 117, 153, 294, 610, 668, 720 |
| Lsp1109I | GCAGC | 1 cut(s) | 745 |
| LweI | GCATC | 1 cut(s) | 745 |
| MaeI | CTAG | 1 cut(s) | 65 |
| MaeII | ACGT | 2 cut(s) | 493, 553 |
| MaeIII | GTNAC | 1 cut(s) | 527 |
| MalI | GATC | 2 cut(s) | 35, 317 |
| MbiI | CCGCTC | 1 cut(s) | 463 |
| MboI | GATC | 2 cut(s) | 33, 315 |
| MboII | GAAGA | 8 cut(s) | 80, 170, 394, 695, 698, 701, 704, 713 |
| MhlI | GDGCHC | 2 cut(s) | 456, 750 |
| MluCI | AATT | 8 cut(s) | 50, 91, 166, 234, 385, 391, 430, 537 |
| MnlI | CCTC | 9 cut(s) | 107, 110, 194, 315, 418, 443, 577, 651, 715 |
| Mph1103I | ATGCAT | 1 cut(s) | 646 |
| MroNI | GCCGGC | 1 cut(s) | 596 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MseI | TTAA | 2 cut(s) | 147, 327 |
| MslI | CAYNNNNRTG | 2 cut(s) | 377, 753 |
| MspI | CCGG | 1 cut(s) | 597 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 70, 460, 597, 641 |
| NaeI | GCCGGC | 1 cut(s) | 598 |
| NdeII | GATC | 2 cut(s) | 33, 315 |
| NgoMIV | GCCGGC | 1 cut(s) | 596 |
| NlaIII | CATG | 4 cut(s) | 31, 368, 425, 575 |
| NlaIV | GGNNCC | 3 cut(s) | 467, 501, 653 |
| NsiI | ATGCAT | 1 cut(s) | 646 |
| OliI | CACNNNNGTG | 1 cut(s) | 377 |
| PagI | TCATGA | 1 cut(s) | 421 |
| PciSI | GCTCTTC | 2 cut(s) | 63, 183 |
| PdiI | GCCGGC | 1 cut(s) | 598 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PkrI | GCNGC | 1 cut(s) | 760 |
| PmaCI | CACGTG | 1 cut(s) | 554 |
| PmlI | CACGTG | 1 cut(s) | 554 |
| Ppu21I | YACGTR | 1 cut(s) | 554 |
| PpuMI | RGGWCCY | 1 cut(s) | 652 |
| PsiI | TTATAA | 2 cut(s) | 390, 435 |
| Psp5II | RGGWCCY | 1 cut(s) | 652 |
| PspCI | CACGTG | 1 cut(s) | 554 |
| PspEI | GGTNACC | 1 cut(s) | 527 |
| PspN4I | GGNNCC | 3 cut(s) | 467, 501, 653 |
| PspPI | GGNCC | 2 cut(s) | 500, 652 |
| PspPPI | RGGWCCY | 1 cut(s) | 652 |
| PstI | CTGCAG | 1 cut(s) | 763 |
| RsaI | GTAC | 2 cut(s) | 26, 550 |
| RsaNI | GTAC | 2 cut(s) | 25, 549 |
| RseI | CAYNNNNRTG | 2 cut(s) | 377, 753 |
| SapI | GCTCTTC | 2 cut(s) | 63, 183 |
| SaqAI | TTAA | 2 cut(s) | 147, 327 |
| SatI | GCNGC | 1 cut(s) | 759 |
| Sau3AI | GATC | 2 cut(s) | 33, 315 |
| Sau96I | GGNCC | 2 cut(s) | 500, 652 |
| SduI | GDGCHC | 2 cut(s) | 456, 750 |
| SfaNI | GCATC | 1 cut(s) | 745 |
| SfcI | CTRYAG | 2 cut(s) | 624, 759 |
| SinI | GGWCC | 2 cut(s) | 500, 652 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 377, 753 |
| Sse9I | AATT | 8 cut(s) | 50, 91, 166, 234, 385, 391, 430, 537 |
| SsiI | CCGC | 1 cut(s) | 463 |
| SspMI | CTAG | 1 cut(s) | 65 |
| TaaI | ACNGT | 1 cut(s) | 154 |
| TaiI | ACGT | 2 cut(s) | 496, 556 |
| TasI | AATT | 8 cut(s) | 50, 91, 166, 234, 385, 391, 430, 537 |
| TatI | WGTACW | 2 cut(s) | 24, 548 |
| Tru1I | TTAA | 2 cut(s) | 147, 327 |
| Tru9I | TTAA | 2 cut(s) | 147, 327 |
| TscAI | CASTG | 1 cut(s) | 598 |
| TseI | GCWGC | 1 cut(s) | 758 |
| TspDTI | ATGAA | 4 cut(s) | 57, 312, 410, 756 |
| TspGWI | ACGGA | 1 cut(s) | 5 |
| TspRI | CASTG | 1 cut(s) | 598 |
| VneI | GTGCAC | 1 cut(s) | 746 |
| VpaK11BI | GGWCC | 2 cut(s) | 500, 652 |
| XapI | RAATTY | 1 cut(s) | 91 |
| XmiI | GTMKAC | 1 cut(s) | 672 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 1 cut(s) | 65 |
| Zsp2I | ATGCAT | 1 cut(s) | 646 |