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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 121 |
| AclI | AACGTT | 1 cut(s) | 309 |
| AclWI | GGATC | 1 cut(s) | 141 |
| AcoI | YGGCCR | 3 cut(s) | 513, 528, 589 |
| AcyI | GRCGYC | 1 cut(s) | 479 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 393, 698 |
| AgsI | TTSAA | 3 cut(s) | 307, 314, 343 |
| AjnI | CCWGG | 1 cut(s) | 643 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 255, 276, 287, 308 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 3 cut(s) | 247, 371, 639 |
| AluI | AGCT | 3 cut(s) | 247, 371, 639 |
| Alw21I | GWGCWC | 1 cut(s) | 270 |
| Alw26I | GTCTC | 2 cut(s) | 446, 486 |
| AlwI | GGATC | 1 cut(s) | 141 |
| AoxI | GGCC | 4 cut(s) | 513, 528, 589, 689 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| AspLEI | GCGC | 2 cut(s) | 330, 544 |
| AspS9I | GGNCC | 1 cut(s) | 689 |
| AsuC2I | CCSGG | 3 cut(s) | 131, 434, 593 |
| AsuHPI | GGTGA | 1 cut(s) | 713 |
| AsuII | TTCGAA | 1 cut(s) | 95 |
| BanI | GGYRCC | 1 cut(s) | 121 |
| Bbv12I | GWGCWC | 1 cut(s) | 270 |
| BccI | CCATC | 1 cut(s) | 524 |
| BciT130I | CCWGG | 1 cut(s) | 645 |
| BclI | TGATCA | 1 cut(s) | 703 |
| BcnI | CCSGG | 3 cut(s) | 131, 434, 593 |
| BcoDI | GTCTC | 2 cut(s) | 446, 486 |
| BfaI | CTAG | 3 cut(s) | 15, 260, 564 |
| BfmI | CTRYAG | 1 cut(s) | 380 |
| BfoI | RGCGCY | 1 cut(s) | 545 |
| Bme1390I | CCNGG | 4 cut(s) | 131, 434, 593, 645 |
| BmgT120I | GGNCC | 1 cut(s) | 689 |
| BmiI | GGNNCC | 2 cut(s) | 123, 690 |
| BmrFI | CCNGG | 4 cut(s) | 131, 434, 593, 645 |
| BmsI | GCATC | 3 cut(s) | 174, 179, 226 |
| Bpu14I | TTCGAA | 1 cut(s) | 95 |
| BpuEI | CTTGAG | 1 cut(s) | 678 |
| BpuMI | CCSGG | 3 cut(s) | 131, 434, 593 |
| BsaHI | GRCGYC | 1 cut(s) | 479 |
| BsaJI | CCNNGG | 2 cut(s) | 473, 571 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 209, 239 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 393, 698 |
| Bse118I | RCCGGY | 2 cut(s) | 526, 698 |
| Bse1I | ACTGG | 1 cut(s) | 173 |
| Bse3DI | GCAATG | 1 cut(s) | 283 |
| BseBI | CCWGG | 1 cut(s) | 645 |
| BseDI | CCNNGG | 2 cut(s) | 473, 571 |
| BseGI | GGATG | 2 cut(s) | 241, 559 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 393, 698 |
| BseMI | GCAATG | 1 cut(s) | 283 |
| BseMII | CTCAG | 1 cut(s) | 223 |
| BseNI | ACTGG | 1 cut(s) | 173 |
| BseRI | GAGGAG | 1 cut(s) | 455 |
| BshFI | GGCC | 4 cut(s) | 515, 530, 591, 691 |
| BshNI | GGYRCC | 1 cut(s) | 121 |
| BsiHKAI | GWGCWC | 1 cut(s) | 270 |
| BsiSI | CCGG | 6 cut(s) | 131, 434, 512, 527, 592, 699 |
| BslFI | GGGAC | 1 cut(s) | 691 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 393, 698 |
| BsmAI | GTCTC | 2 cut(s) | 446, 486 |
| BsmBI | CGTCTC | 1 cut(s) | 486 |
| BsmFI | GGGAC | 1 cut(s) | 691 |
| BsnI | GGCC | 4 cut(s) | 515, 530, 591, 691 |
| Bsp119I | TTCGAA | 1 cut(s) | 95 |
| Bsp1286I | GDGCHC | 1 cut(s) | 270 |
| Bsp143I | GATC | 4 cut(s) | 133, 228, 460, 703 |
| Bsp19I | CCATGG | 1 cut(s) | 473 |
| BspANI | GGCC | 4 cut(s) | 515, 530, 591, 691 |
| BspCNI | CTCAG | 1 cut(s) | 222 |
| BspLI | GGNNCC | 2 cut(s) | 123, 690 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 378 |
| BspT104I | TTCGAA | 1 cut(s) | 95 |
| BspT107I | GGYRCC | 1 cut(s) | 121 |
| BsrDI | GCAATG | 1 cut(s) | 283 |
| BsrFI | RCCGGY | 2 cut(s) | 526, 698 |
| BsrI | ACTGG | 1 cut(s) | 173 |
| BssAI | RCCGGY | 2 cut(s) | 526, 698 |
| BssECI | CCNNGG | 2 cut(s) | 473, 571 |
| BssMI | GATC | 4 cut(s) | 133, 228, 460, 703 |
| BssNI | GRCGYC | 1 cut(s) | 479 |
| BssT1I | CCWWGG | 2 cut(s) | 473, 571 |
| Bst2UI | CCWGG | 1 cut(s) | 645 |
| Bst4CI | ACNGT | 3 cut(s) | 62, 384, 682 |
| Bst6I | CTCTTC | 2 cut(s) | 258, 378 |
| BstACI | GRCGYC | 1 cut(s) | 479 |
| BstBI | TTCGAA | 1 cut(s) | 95 |
| BstDEI | CTNAG | 1 cut(s) | 209 |
| BstDSI | CCRYGG | 1 cut(s) | 473 |
| BstF5I | GGATG | 2 cut(s) | 241, 559 |
| BstH2I | RGCGCY | 1 cut(s) | 545 |
| BstHHI | GCGC | 2 cut(s) | 330, 544 |
| BstKTI | GATC | 4 cut(s) | 136, 231, 463, 706 |
| BstMAI | GTCTC | 2 cut(s) | 446, 486 |
| BstMBI | GATC | 4 cut(s) | 133, 228, 460, 703 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 265, 636, 645 |
| BstNI | CCWGG | 1 cut(s) | 645 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstSCI | CCNGG | 4 cut(s) | 129, 432, 591, 643 |
| BstSFI | CTRYAG | 1 cut(s) | 380 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 674 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BsuRI | GGCC | 4 cut(s) | 515, 530, 591, 691 |
| BtgI | CCRYGG | 1 cut(s) | 473 |
| BtgZI | GCGATG | 2 cut(s) | 202, 488 |
| BtsCI | GGATG | 2 cut(s) | 241, 559 |
| CfoI | GCGC | 2 cut(s) | 330, 544 |
| Cfr10I | RCCGGY | 2 cut(s) | 526, 698 |
| Cfr13I | GGNCC | 1 cut(s) | 689 |
| CseI | GACGC | 1 cut(s) | 468 |
| CviAII | CATG | 4 cut(s) | 31, 164, 388, 474 |
| DdeI | CTNAG | 1 cut(s) | 209 |
| DpnI | GATC | 4 cut(s) | 135, 230, 462, 705 |
| DpnII | GATC | 4 cut(s) | 133, 228, 460, 703 |
| EaeI | YGGCCR | 3 cut(s) | 513, 528, 589 |
| Eam1104I | CTCTTC | 2 cut(s) | 258, 378 |
| EarI | CTCTTC | 2 cut(s) | 258, 378 |
| Eco130I | CCWWGG | 2 cut(s) | 473, 571 |
| EcoO109I | RGGNCCY | 1 cut(s) | 689 |
| EcoRII | CCWGG | 1 cut(s) | 643 |
| EcoT14I | CCWWGG | 2 cut(s) | 473, 571 |
| ErhI | CCWWGG | 2 cut(s) | 473, 571 |
| Esp3I | CGTCTC | 1 cut(s) | 486 |
| FaeI | CATG | 4 cut(s) | 34, 167, 391, 477 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 276, 308, 430, 462 |
| FaqI | GGGAC | 1 cut(s) | 691 |
| FatI | CATG | 4 cut(s) | 30, 163, 387, 473 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| FbaI | TGATCA | 1 cut(s) | 703 |
| FokI | GGATG | 2 cut(s) | 248, 546 |
| FspBI | CTAG | 3 cut(s) | 15, 260, 564 |
| GlaI | GCGC | 2 cut(s) | 329, 543 |
| HaeII | RGCGCY | 1 cut(s) | 545 |
| HaeIII | GGCC | 4 cut(s) | 515, 530, 591, 691 |
| HapII | CCGG | 6 cut(s) | 131, 434, 512, 527, 592, 699 |
| HgaI | GACGC | 1 cut(s) | 468 |
| HhaI | GCGC | 2 cut(s) | 330, 544 |
| Hin1I | GRCGYC | 1 cut(s) | 479 |
| Hin1II | CATG | 4 cut(s) | 34, 167, 391, 477 |
| Hin6I | GCGC | 2 cut(s) | 328, 542 |
| HinP1I | GCGC | 2 cut(s) | 328, 542 |
| HinfI | GANTC | 5 cut(s) | 18, 38, 287, 499, 604 |
| HpaII | CCGG | 6 cut(s) | 131, 434, 512, 527, 592, 699 |
| HphI | GGTGA | 1 cut(s) | 713 |
| Hpy166II | GTNNAC | 1 cut(s) | 404 |
| Hpy188I | TCNGA | 3 cut(s) | 212, 367, 664 |
| Hpy188III | TCNNGA | 2 cut(s) | 181, 423 |
| Hpy8I | GTNNAC | 1 cut(s) | 404 |
| Hpy99I | CGWCG | 1 cut(s) | 585 |
| HpyAV | CCTTC | 4 cut(s) | 91, 302, 463, 496 |
| HpyCH4III | ACNGT | 3 cut(s) | 62, 384, 682 |
| HpyCH4IV | ACGT | 1 cut(s) | 309 |
| HpyCH4V | TGCA | 2 cut(s) | 239, 523 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 265, 636, 645 |
| HpyF3I | CTNAG | 1 cut(s) | 209 |
| HpySE526I | ACGT | 1 cut(s) | 309 |
| Hsp92I | GRCGYC | 1 cut(s) | 479 |
| Hsp92II | CATG | 4 cut(s) | 34, 167, 391, 477 |
| HspAI | GCGC | 2 cut(s) | 328, 542 |
| Ksp22I | TGATCA | 1 cut(s) | 703 |
| Kzo9I | GATC | 4 cut(s) | 133, 228, 460, 703 |
| LguI | GCTCTTC | 2 cut(s) | 258, 378 |
| LmnI | GCTCC | 1 cut(s) | 539 |
| LweI | GCATC | 3 cut(s) | 174, 179, 226 |
| MaeI | CTAG | 3 cut(s) | 15, 260, 564 |
| MaeII | ACGT | 1 cut(s) | 309 |
| MaeIII | GTNAC | 3 cut(s) | 67, 349, 566 |
| MalI | GATC | 4 cut(s) | 135, 230, 462, 705 |
| MboI | GATC | 4 cut(s) | 133, 228, 460, 703 |
| MboII | GAAGA | 3 cut(s) | 275, 365, 481 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 1 cut(s) | 270 |
| MluCI | AATT | 3 cut(s) | 114, 361, 672 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MmeI | TCCRAC | 1 cut(s) | 687 |
| MnlI | CCTC | 7 cut(s) | 98, 387, 476, 505, 564, 610, 702 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MslI | CAYNNNNRTG | 1 cut(s) | 564 |
| MspI | CCGG | 6 cut(s) | 131, 434, 512, 527, 592, 699 |
| MspR9I | CCNGG | 4 cut(s) | 131, 434, 593, 645 |
| MvaI | CCWGG | 1 cut(s) | 645 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 265, 636, 645 |
| NciI | CCSGG | 3 cut(s) | 131, 434, 593 |
| NcoI | CCATGG | 1 cut(s) | 473 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 4 cut(s) | 133, 228, 460, 703 |
| NlaIII | CATG | 4 cut(s) | 34, 167, 391, 477 |
| NlaIV | GGNNCC | 2 cut(s) | 123, 690 |
| NmuCI | GTSAC | 1 cut(s) | 566 |
| NspI | RCATGY | 1 cut(s) | 167 |
| NspV | TTCGAA | 1 cut(s) | 95 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 378 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| PfeI | GAWTC | 3 cut(s) | 287, 499, 604 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Psp1406I | AACGTT | 1 cut(s) | 309 |
| Psp6I | CCWGG | 1 cut(s) | 643 |
| PspGI | CCWGG | 1 cut(s) | 643 |
| PspN4I | GGNNCC | 2 cut(s) | 123, 690 |
| PspPI | GGNCC | 1 cut(s) | 689 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RseI | CAYNNNNRTG | 1 cut(s) | 564 |
| SapI | GCTCTTC | 2 cut(s) | 258, 378 |
| Sau3AI | GATC | 4 cut(s) | 133, 228, 460, 703 |
| Sau96I | GGNCC | 1 cut(s) | 689 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 4 cut(s) | 131, 434, 593, 645 |
| SduI | GDGCHC | 1 cut(s) | 270 |
| SfaNI | GCATC | 3 cut(s) | 174, 179, 226 |
| SfcI | CTRYAG | 1 cut(s) | 380 |
| SfuI | TTCGAA | 1 cut(s) | 95 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 564 |
| SmlI | CTYRAG | 1 cut(s) | 693 |
| SmoI | CTYRAG | 1 cut(s) | 693 |
| Sse9I | AATT | 3 cut(s) | 114, 361, 672 |
| SspMI | CTAG | 3 cut(s) | 15, 260, 564 |
| StyD4I | CCNGG | 4 cut(s) | 129, 432, 591, 643 |
| StyI | CCWWGG | 2 cut(s) | 473, 571 |
| TaaI | ACNGT | 3 cut(s) | 62, 384, 682 |
| TaiI | ACGT | 1 cut(s) | 312 |
| TaqI | TCGA | 7 cut(s) | 5, 21, 95, 227, 497, 602, 607 |
| TasI | AATT | 3 cut(s) | 114, 361, 672 |
| TfiI | GAWTC | 3 cut(s) | 287, 499, 604 |
| TseFI | GTSAC | 1 cut(s) | 566 |
| Tsp45I | GTSAC | 1 cut(s) | 566 |
| TspDTI | ATGAA | 2 cut(s) | 24, 491 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 3 cut(s) | 15, 260, 564 |