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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 50 |
| AciI | CCGC | 5 cut(s) | 16, 37, 50, 167, 414 |
| AclWI | GGATC | 1 cut(s) | 247 |
| AcuI | CTGAAG | 1 cut(s) | 360 |
| AcvI | CACGTG | 2 cut(s) | 59, 77 |
| AdeI | CACNNNGTG | 2 cut(s) | 62, 188 |
| AfaI | GTAC | 2 cut(s) | 277, 305 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 25, 78, 172 |
| AflIII | ACRYGT | 3 cut(s) | 56, 74, 222 |
| AgsI | TTSAA | 1 cut(s) | 385 |
| AjiI | CACGTC | 1 cut(s) | 223 |
| AluBI | AGCT | 2 cut(s) | 287, 294 |
| AluI | AGCT | 2 cut(s) | 287, 294 |
| Alw21I | GWGCWC | 2 cut(s) | 193, 405 |
| Alw44I | GTGCAC | 1 cut(s) | 189 |
| AlwI | GGATC | 1 cut(s) | 247 |
| AoxI | GGCC | 2 cut(s) | 106, 121 |
| ApaLI | GTGCAC | 1 cut(s) | 189 |
| ApeKI | GCWGC | 2 cut(s) | 156, 287 |
| AspS9I | GGNCC | 3 cut(s) | 5, 106, 121 |
| AsuHPI | GGTGA | 2 cut(s) | 361, 365 |
| AvaII | GGWCC | 1 cut(s) | 5 |
| AxyI | CCTNAGG | 1 cut(s) | 171 |
| BaeGI | GKGCMC | 2 cut(s) | 56, 193 |
| BauI | CACGAG | 1 cut(s) | 404 |
| BbrPI | CACGTG | 2 cut(s) | 59, 77 |
| Bbv12I | GWGCWC | 2 cut(s) | 193, 405 |
| BbvI | GCAGC | 2 cut(s) | 168, 274 |
| BccI | CCATC | 1 cut(s) | 344 |
| BceAI | ACGGC | 3 cut(s) | 93, 108, 129 |
| BfaI | CTAG | 1 cut(s) | 284 |
| BisI | GCNGC | 3 cut(s) | 157, 288, 414 |
| BlsI | GCNGC | 3 cut(s) | 158, 289, 415 |
| Bme18I | GGWCC | 1 cut(s) | 5 |
| BmgBI | CACGTC | 1 cut(s) | 223 |
| BmgT120I | GGNCC | 3 cut(s) | 5, 106, 121 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmsI | GCATC | 1 cut(s) | 400 |
| BoxI | GACNNNNGTC | 1 cut(s) | 225 |
| BsaAI | YACGTR | 2 cut(s) | 59, 77 |
| BsaJI | CCNNGG | 3 cut(s) | 102, 124, 145 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 25, 78, 172 |
| Bse1I | ACTGG | 1 cut(s) | 394 |
| Bse21I | CCTNAGG | 1 cut(s) | 171 |
| Bse3DI | GCAATG | 1 cut(s) | 269 |
| BseDI | CCNNGG | 3 cut(s) | 102, 124, 145 |
| BseGI | GGATG | 1 cut(s) | 415 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 25, 78, 172 |
| BseMI | GCAATG | 1 cut(s) | 269 |
| BseNI | ACTGG | 1 cut(s) | 394 |
| BseRI | GAGGAG | 1 cut(s) | 99 |
| BseSI | GKGCMC | 2 cut(s) | 56, 193 |
| BseXI | GCAGC | 2 cut(s) | 168, 274 |
| BshFI | GGCC | 2 cut(s) | 108, 123 |
| BsiHKAI | GWGCWC | 2 cut(s) | 193, 405 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 25, 78, 172 |
| BsnI | GGCC | 2 cut(s) | 108, 123 |
| Bsp1286I | GDGCHC | 3 cut(s) | 56, 193, 405 |
| Bsp143I | GATC | 1 cut(s) | 239 |
| Bsp19I | CCATGG | 1 cut(s) | 102 |
| BspACI | CCGC | 5 cut(s) | 16, 37, 50, 167, 414 |
| BspANI | GGCC | 2 cut(s) | 108, 123 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspPI | GGATC | 1 cut(s) | 247 |
| BspQI | GCTCTTC | 1 cut(s) | 393 |
| BsrBI | CCGCTC | 1 cut(s) | 50 |
| BsrDI | GCAATG | 1 cut(s) | 269 |
| BsrI | ACTGG | 1 cut(s) | 394 |
| BssECI | CCNNGG | 3 cut(s) | 102, 124, 145 |
| BssMI | GATC | 1 cut(s) | 239 |
| BssSI | CACGAG | 1 cut(s) | 404 |
| BssT1I | CCWWGG | 1 cut(s) | 102 |
| Bst2BI | CACGAG | 1 cut(s) | 404 |
| Bst4CI | ACNGT | 1 cut(s) | 118 |
| Bst6I | CTCTTC | 1 cut(s) | 393 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 335 |
| BstBAI | YACGTR | 2 cut(s) | 59, 77 |
| BstC8I | GCNNGC | 2 cut(s) | 52, 292 |
| BstDEI | CTNAG | 1 cut(s) | 171 |
| BstDSI | CCRYGG | 3 cut(s) | 102, 124, 145 |
| BstF5I | GGATG | 1 cut(s) | 415 |
| BstKTI | GATC | 1 cut(s) | 242 |
| BstMBI | GATC | 1 cut(s) | 239 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 141, 335 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 225 |
| BstSLI | GKGCMC | 2 cut(s) | 56, 193 |
| BstV1I | GCAGC | 2 cut(s) | 168, 274 |
| Bsu36I | CCTNAGG | 1 cut(s) | 171 |
| BsuRI | GGCC | 2 cut(s) | 108, 123 |
| BtgI | CCRYGG | 3 cut(s) | 102, 124, 145 |
| BtrI | CACGTC | 1 cut(s) | 223 |
| BtsCI | GGATG | 1 cut(s) | 415 |
| BtsIMutI | CAGTG | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 2 cut(s) | 52, 292 |
| Cfr13I | GGNCC | 3 cut(s) | 5, 106, 121 |
| Csp6I | GTAC | 2 cut(s) | 276, 304 |
| CviAII | CATG | 1 cut(s) | 103 |
| CviJI | RGCY | 4 cut(s) | 108, 123, 287, 294 |
| CviKI_1 | RGCY | 4 cut(s) | 108, 123, 287, 294 |
| CviQI | GTAC | 2 cut(s) | 276, 304 |
| DdeI | CTNAG | 1 cut(s) | 171 |
| DpnI | GATC | 1 cut(s) | 241 |
| DpnII | GATC | 1 cut(s) | 239 |
| DraIII | CACNNNGTG | 2 cut(s) | 62, 188 |
| Eam1104I | CTCTTC | 1 cut(s) | 393 |
| EarI | CTCTTC | 1 cut(s) | 393 |
| Eco130I | CCWWGG | 1 cut(s) | 102 |
| Eco47I | GGWCC | 1 cut(s) | 5 |
| Eco57I | CTGAAG | 1 cut(s) | 360 |
| Eco72I | CACGTG | 2 cut(s) | 59, 77 |
| Eco81I | CCTNAGG | 1 cut(s) | 171 |
| EcoT14I | CCWWGG | 1 cut(s) | 102 |
| ErhI | CCWWGG | 1 cut(s) | 102 |
| FaeI | CATG | 1 cut(s) | 106 |
| FaiI | YATR | 6 cut(s) | 10, 93, 104, 137, 231, 374 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 318, 350 |
| FatI | CATG | 1 cut(s) | 102 |
| FauI | CCCGC | 2 cut(s) | 43, 174 |
| Fnu4HI | GCNGC | 3 cut(s) | 157, 288, 414 |
| FokI | GGATG | 1 cut(s) | 422 |
| Fsp4HI | GCNGC | 3 cut(s) | 157, 288, 414 |
| FspBI | CTAG | 1 cut(s) | 284 |
| GluI | GCNGC | 3 cut(s) | 157, 288, 414 |
| HaeIII | GGCC | 2 cut(s) | 108, 123 |
| Hin1II | CATG | 1 cut(s) | 106 |
| HincII | GTYRAC | 1 cut(s) | 211 |
| HindII | GTYRAC | 1 cut(s) | 211 |
| HphI | GGTGA | 2 cut(s) | 361, 365 |
| Hpy166II | GTNNAC | 3 cut(s) | 191, 211, 278 |
| Hpy8I | GTNNAC | 3 cut(s) | 191, 211, 278 |
| HpyAV | CCTTC | 1 cut(s) | 23 |
| HpyCH4III | ACNGT | 1 cut(s) | 118 |
| HpyCH4IV | ACGT | 4 cut(s) | 58, 76, 187, 222 |
| HpyCH4V | TGCA | 2 cut(s) | 191, 290 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 141, 335 |
| HpyF3I | CTNAG | 1 cut(s) | 171 |
| HpySE526I | ACGT | 4 cut(s) | 58, 76, 187, 222 |
| Hsp92II | CATG | 1 cut(s) | 106 |
| Kzo9I | GATC | 1 cut(s) | 239 |
| LguI | GCTCTTC | 1 cut(s) | 393 |
| LmnI | GCTCC | 2 cut(s) | 47, 319 |
| LpnPI | CCDG | 2 cut(s) | 292, 375 |
| Lsp1109I | GCAGC | 2 cut(s) | 168, 274 |
| LweI | GCATC | 1 cut(s) | 400 |
| MaeI | CTAG | 1 cut(s) | 284 |
| MaeII | ACGT | 4 cut(s) | 58, 76, 187, 222 |
| MaeIII | GTNAC | 1 cut(s) | 110 |
| MalI | GATC | 1 cut(s) | 241 |
| MbiI | CCGCTC | 1 cut(s) | 50 |
| MboI | GATC | 1 cut(s) | 239 |
| MboII | GAAGA | 4 cut(s) | 353, 356, 368, 410 |
| MhlI | GDGCHC | 3 cut(s) | 56, 193, 405 |
| MluCI | AATT | 1 cut(s) | 363 |
| MnlI | CCTC | 5 cut(s) | 77, 122, 204, 309, 400 |
| MseI | TTAA | 2 cut(s) | 258, 427 |
| MslI | CAYNNNNRTG | 2 cut(s) | 234, 408 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 141, 335 |
| NcoI | CCATGG | 1 cut(s) | 102 |
| NdeII | GATC | 1 cut(s) | 239 |
| NlaIII | CATG | 1 cut(s) | 106 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| PciSI | GCTCTTC | 1 cut(s) | 393 |
| PkrI | GCNGC | 3 cut(s) | 158, 289, 415 |
| PmaCI | CACGTG | 2 cut(s) | 59, 77 |
| PmlI | CACGTG | 2 cut(s) | 59, 77 |
| Ppu21I | YACGTR | 2 cut(s) | 59, 77 |
| PshAI | GACNNNNGTC | 1 cut(s) | 225 |
| PspCI | CACGTG | 2 cut(s) | 59, 77 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 3 cut(s) | 5, 106, 121 |
| RsaI | GTAC | 2 cut(s) | 277, 305 |
| RsaNI | GTAC | 2 cut(s) | 276, 304 |
| RseI | CAYNNNNRTG | 2 cut(s) | 234, 408 |
| SapI | GCTCTTC | 1 cut(s) | 393 |
| SaqAI | TTAA | 2 cut(s) | 258, 427 |
| SatI | GCNGC | 3 cut(s) | 157, 288, 414 |
| Sau3AI | GATC | 1 cut(s) | 239 |
| Sau96I | GGNCC | 3 cut(s) | 5, 106, 121 |
| SduI | GDGCHC | 3 cut(s) | 56, 193, 405 |
| SfaNI | GCATC | 1 cut(s) | 400 |
| SinI | GGWCC | 1 cut(s) | 5 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 234, 408 |
| Sse9I | AATT | 1 cut(s) | 363 |
| SsiI | CCGC | 5 cut(s) | 16, 37, 50, 167, 414 |
| SspMI | CTAG | 1 cut(s) | 284 |
| StyI | CCWWGG | 1 cut(s) | 102 |
| TaaI | ACNGT | 1 cut(s) | 118 |
| TaiI | ACGT | 4 cut(s) | 61, 79, 190, 225 |
| TaqI | TCGA | 1 cut(s) | 246 |
| TasI | AATT | 1 cut(s) | 363 |
| TatI | WGTACW | 2 cut(s) | 275, 303 |
| TauI | GCSGC | 1 cut(s) | 416 |
| Tru1I | TTAA | 2 cut(s) | 258, 427 |
| Tru9I | TTAA | 2 cut(s) | 258, 427 |
| TscAI | CASTG | 1 cut(s) | 121 |
| TseI | GCWGC | 2 cut(s) | 156, 287 |
| TspDTI | ATGAA | 1 cut(s) | 411 |
| TspRI | CASTG | 1 cut(s) | 121 |
| VneI | GTGCAC | 1 cut(s) | 189 |
| VpaK11BI | GGWCC | 1 cut(s) | 5 |
| XspI | CTAG | 1 cut(s) | 284 |