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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 546 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 606 |
| AatII | GACGTC | 1 cut(s) | 193 |
| AccB1I | GGYRCC | 1 cut(s) | 719 |
| AccI | GTMKAC | 1 cut(s) | 796 |
| AciI | CCGC | 2 cut(s) | 653, 876 |
| AclWI | GGATC | 1 cut(s) | 141 |
| AcoI | YGGCCR | 1 cut(s) | 706 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AdeI | CACNNNGTG | 1 cut(s) | 665 |
| AfaI | GTAC | 1 cut(s) | 221 |
| AfeI | AGCGCT | 1 cut(s) | 258 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 586, 587, 681 |
| AflIII | ACRYGT | 2 cut(s) | 222, 677 |
| AgsI | TTSAA | 5 cut(s) | 96, 307, 314, 343, 847 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 343, 410 |
| AjnI | CCWGG | 2 cut(s) | 117, 703 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 5 cut(s) | 63, 247, 371, 753, 851 |
| AluI | AGCT | 5 cut(s) | 63, 247, 371, 753, 851 |
| Alw21I | GWGCWC | 1 cut(s) | 867 |
| Alw44I | GTGCAC | 1 cut(s) | 863 |
| AlwI | GGATC | 1 cut(s) | 141 |
| Aor51HI | AGCGCT | 1 cut(s) | 258 |
| AoxI | GGCC | 1 cut(s) | 706 |
| ApaLI | GTGCAC | 1 cut(s) | 863 |
| ApeKI | GCWGC | 1 cut(s) | 753 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| AspLEI | GCGC | 3 cut(s) | 259, 330, 567 |
| AspS9I | GGNCC | 2 cut(s) | 608, 776 |
| AsuHPI | GGTGA | 2 cut(s) | 823, 827 |
| AvaII | GGWCC | 2 cut(s) | 608, 776 |
| AxyI | CCTNAGG | 1 cut(s) | 780 |
| BaeGI | GKGCMC | 1 cut(s) | 867 |
| BalI | TGGCCA | 1 cut(s) | 708 |
| BanI | GGYRCC | 1 cut(s) | 719 |
| BauI | CACGAG | 2 cut(s) | 137, 514 |
| Bbv12I | GWGCWC | 1 cut(s) | 867 |
| BbvI | GCAGC | 1 cut(s) | 740 |
| BccI | CCATC | 1 cut(s) | 806 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 482, 516 |
| BciT130I | CCWGG | 2 cut(s) | 119, 705 |
| BciVI | GTATCC | 2 cut(s) | 649, 710 |
| BclI | TGATCA | 1 cut(s) | 510 |
| BfaI | CTAG | 3 cut(s) | 15, 260, 750 |
| BfoI | RGCGCY | 1 cut(s) | 260 |
| BfuI | GTATCC | 2 cut(s) | 649, 710 |
| BisI | GCNGC | 2 cut(s) | 754, 876 |
| BlsI | GCNGC | 2 cut(s) | 755, 877 |
| Bme1390I | CCNGG | 2 cut(s) | 119, 705 |
| Bme18I | GGWCC | 2 cut(s) | 608, 776 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 343, 410 |
| BmgT120I | GGNCC | 2 cut(s) | 608, 776 |
| BmiI | GGNNCC | 3 cut(s) | 123, 609, 721 |
| BmrFI | CCNGG | 2 cut(s) | 119, 705 |
| BmsI | GCATC | 3 cut(s) | 174, 226, 862 |
| BpmI | CTGGAG | 1 cut(s) | 873 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BsaBI | GATNNNNATC | 1 cut(s) | 825 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaJI | CCNNGG | 2 cut(s) | 492, 703 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 209, 239, 676, 706, 846, 876 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 586, 587, 681 |
| Bse21I | CCTNAGG | 1 cut(s) | 780 |
| Bse3DI | GCAATG | 2 cut(s) | 283, 676 |
| Bse8I | GATNNNNATC | 1 cut(s) | 825 |
| BseBI | CCWGG | 2 cut(s) | 119, 705 |
| BseDI | CCNNGG | 2 cut(s) | 492, 703 |
| BseGI | GGATG | 1 cut(s) | 877 |
| BseJI | GATNNNNATC | 1 cut(s) | 825 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 586, 587, 681 |
| BseMI | GCAATG | 2 cut(s) | 283, 676 |
| BseMII | CTCAG | 3 cut(s) | 63, 223, 771 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 1 cut(s) | 867 |
| BseXI | GCAGC | 1 cut(s) | 740 |
| BseYI | CCCAGC | 1 cut(s) | 63 |
| BshFI | GGCC | 1 cut(s) | 708 |
| BshNI | GGYRCC | 1 cut(s) | 719 |
| BsiHKAI | GWGCWC | 1 cut(s) | 867 |
| BslFI | GGGAC | 2 cut(s) | 603, 612 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 586, 587, 681 |
| BsmFI | GGGAC | 2 cut(s) | 603, 612 |
| BsnI | GGCC | 1 cut(s) | 708 |
| Bsp1286I | GDGCHC | 1 cut(s) | 867 |
| Bsp143I | GATC | 3 cut(s) | 133, 228, 510 |
| BspACI | CCGC | 2 cut(s) | 653, 876 |
| BspANI | GGCC | 1 cut(s) | 708 |
| BspCNI | CTCAG | 3 cut(s) | 62, 222, 772 |
| BspHI | TCATGA | 1 cut(s) | 532 |
| BspLI | GGNNCC | 3 cut(s) | 123, 609, 721 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BspQI | GCTCTTC | 1 cut(s) | 378 |
| BspT107I | GGYRCC | 1 cut(s) | 719 |
| BsrDI | GCAATG | 2 cut(s) | 283, 676 |
| BssECI | CCNNGG | 2 cut(s) | 492, 703 |
| BssMI | GATC | 3 cut(s) | 133, 228, 510 |
| BssNAI | GTATAC | 1 cut(s) | 797 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssSI | CACGAG | 2 cut(s) | 137, 514 |
| Bst1107I | GTATAC | 1 cut(s) | 797 |
| Bst2BI | CACGAG | 2 cut(s) | 137, 514 |
| Bst2UI | CCWGG | 2 cut(s) | 119, 705 |
| Bst6I | CTCTTC | 2 cut(s) | 258, 378 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstC8I | GCNNGC | 2 cut(s) | 740, 744 |
| BstDEI | CTNAG | 4 cut(s) | 49, 209, 522, 780 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 1 cut(s) | 877 |
| BstH2I | RGCGCY | 1 cut(s) | 260 |
| BstHHI | GCGC | 3 cut(s) | 259, 330, 567 |
| BstKTI | GATC | 3 cut(s) | 136, 231, 513 |
| BstMBI | GATC | 3 cut(s) | 133, 228, 510 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 571 |
| BstNI | CCWGG | 2 cut(s) | 119, 705 |
| BstNSI | RCATGY | 2 cut(s) | 226, 681 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 117, 703 |
| BstSLI | GKGCMC | 1 cut(s) | 867 |
| BstV1I | GCAGC | 1 cut(s) | 740 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 716 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BstZ17I | GTATAC | 1 cut(s) | 797 |
| Bsu36I | CCTNAGG | 1 cut(s) | 780 |
| BsuI | GTATCC | 2 cut(s) | 649, 710 |
| BsuRI | GGCC | 1 cut(s) | 708 |
| BtsCI | GGATG | 1 cut(s) | 877 |
| Cac8I | GCNNGC | 2 cut(s) | 740, 744 |
| CciI | TCATGA | 1 cut(s) | 532 |
| CfoI | GCGC | 3 cut(s) | 259, 330, 567 |
| Cfr13I | GGNCC | 2 cut(s) | 608, 776 |
| Csp6I | GTAC | 1 cut(s) | 220 |
| CviAII | CATG | 7 cut(s) | 164, 223, 388, 533, 593, 662, 678 |
| CviJI | RGCY | 7 cut(s) | 48, 63, 247, 371, 708, 753, 851 |
| CviKI_1 | RGCY | 7 cut(s) | 48, 63, 247, 371, 708, 753, 851 |
| CviQI | GTAC | 1 cut(s) | 220 |
| DdeI | CTNAG | 4 cut(s) | 49, 209, 522, 780 |
| DpnI | GATC | 3 cut(s) | 135, 230, 512 |
| DpnII | GATC | 3 cut(s) | 133, 228, 510 |
| DraIII | CACNNNGTG | 1 cut(s) | 665 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 606 |
| DriI | GACNNNNNGTC | 2 cut(s) | 343, 410 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 606 |
| EaeI | YGGCCR | 1 cut(s) | 706 |
| Eam1104I | CTCTTC | 2 cut(s) | 258, 378 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 343, 410 |
| EarI | CTCTTC | 2 cut(s) | 258, 378 |
| Eco47I | GGWCC | 2 cut(s) | 608, 776 |
| Eco47III | AGCGCT | 1 cut(s) | 258 |
| Eco81I | CCTNAGG | 1 cut(s) | 780 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO109I | RGGNCCY | 1 cut(s) | 776 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 2 cut(s) | 117, 703 |
| FaeI | CATG | 7 cut(s) | 167, 226, 391, 536, 596, 665, 681 |
| FaqI | GGGAC | 2 cut(s) | 603, 612 |
| FatI | CATG | 7 cut(s) | 163, 222, 387, 532, 592, 661, 677 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| FbaI | TGATCA | 1 cut(s) | 510 |
| FblI | GTMKAC | 1 cut(s) | 796 |
| Fnu4HI | GCNGC | 2 cut(s) | 754, 876 |
| FokI | GGATG | 1 cut(s) | 884 |
| Fsp4HI | GCNGC | 2 cut(s) | 754, 876 |
| FspBI | CTAG | 3 cut(s) | 15, 260, 750 |
| GlaI | GCGC | 3 cut(s) | 258, 329, 566 |
| GluI | GCNGC | 2 cut(s) | 754, 876 |
| GsaI | CCCAGC | 1 cut(s) | 67 |
| GsuI | CTGGAG | 1 cut(s) | 873 |
| HaeII | RGCGCY | 1 cut(s) | 260 |
| HaeIII | GGCC | 1 cut(s) | 708 |
| HhaI | GCGC | 3 cut(s) | 259, 330, 567 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 7 cut(s) | 167, 226, 391, 536, 596, 665, 681 |
| Hin6I | GCGC | 3 cut(s) | 257, 328, 565 |
| HinP1I | GCGC | 3 cut(s) | 257, 328, 565 |
| HinfI | GANTC | 3 cut(s) | 18, 38, 287 |
| HphI | GGTGA | 2 cut(s) | 823, 827 |
| Hpy166II | GTNNAC | 4 cut(s) | 144, 404, 797, 865 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 133, 212, 367 |
| Hpy188III | TCNNGA | 3 cut(s) | 35, 514, 533 |
| Hpy8I | GTNNAC | 4 cut(s) | 144, 404, 797, 865 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 2 cut(s) | 301, 460 |
| HpyCH4IV | ACGT | 2 cut(s) | 190, 601 |
| HpyCH4V | TGCA | 5 cut(s) | 239, 551, 642, 756, 865 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 571 |
| HpyF3I | CTNAG | 4 cut(s) | 49, 209, 522, 780 |
| HpySE526I | ACGT | 2 cut(s) | 190, 601 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 7 cut(s) | 167, 226, 391, 536, 596, 665, 681 |
| HspAI | GCGC | 3 cut(s) | 257, 328, 565 |
| Ksp22I | TGATCA | 1 cut(s) | 510 |
| Kzo9I | GATC | 3 cut(s) | 133, 228, 510 |
| LguI | GCTCTTC | 1 cut(s) | 378 |
| LmnI | GCTCC | 2 cut(s) | 571, 785 |
| Lsp1109I | GCAGC | 1 cut(s) | 740 |
| LweI | GCATC | 3 cut(s) | 174, 226, 862 |
| MaeI | CTAG | 3 cut(s) | 15, 260, 750 |
| MaeII | ACGT | 2 cut(s) | 190, 601 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 3 cut(s) | 135, 230, 512 |
| MboI | GATC | 3 cut(s) | 133, 228, 510 |
| MboII | GAAGA | 5 cut(s) | 275, 365, 644, 821, 830 |
| MfeI | CAATTG | 1 cut(s) | 465 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 1 cut(s) | 867 |
| MlsI | TGGCCA | 1 cut(s) | 708 |
| MluCI | AATT | 6 cut(s) | 361, 383, 429, 465, 541, 637 |
| MluNI | TGGCCA | 1 cut(s) | 708 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| Mox20I | TGGCCA | 1 cut(s) | 708 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MscI | TGGCCA | 1 cut(s) | 708 |
| MseI | TTAA | 1 cut(s) | 428 |
| MslI | CAYNNNNRTG | 3 cut(s) | 182, 714, 870 |
| Msp20I | TGGCCA | 1 cut(s) | 708 |
| MspR9I | CCNGG | 2 cut(s) | 119, 705 |
| MunI | CAATTG | 1 cut(s) | 465 |
| MvaI | CCWGG | 2 cut(s) | 119, 705 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 571 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 3 cut(s) | 133, 228, 510 |
| NlaIII | CATG | 7 cut(s) | 167, 226, 391, 536, 596, 665, 681 |
| NlaIV | GGNNCC | 3 cut(s) | 123, 609, 721 |
| NspI | RCATGY | 2 cut(s) | 226, 681 |
| PagI | TCATGA | 1 cut(s) | 532 |
| PciI | ACATGT | 2 cut(s) | 222, 677 |
| PciSI | GCTCTTC | 1 cut(s) | 378 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PfoI | TCCNGGA | 1 cut(s) | 117 |
| PkrI | GCNGC | 2 cut(s) | 755, 877 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| PpuMI | RGGWCCY | 1 cut(s) | 776 |
| PscI | ACATGT | 2 cut(s) | 222, 677 |
| PsiI | TTATAA | 1 cut(s) | 546 |
| Psp5II | RGGWCCY | 1 cut(s) | 776 |
| Psp6I | CCWGG | 2 cut(s) | 117, 703 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspFI | CCCAGC | 1 cut(s) | 63 |
| PspGI | CCWGG | 2 cut(s) | 117, 703 |
| PspN4I | GGNNCC | 3 cut(s) | 123, 609, 721 |
| PspPI | GGNCC | 2 cut(s) | 608, 776 |
| PspPPI | RGGWCCY | 1 cut(s) | 776 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 1 cut(s) | 221 |
| RsaNI | GTAC | 1 cut(s) | 220 |
| RseI | CAYNNNNRTG | 3 cut(s) | 182, 714, 870 |
| SapI | GCTCTTC | 1 cut(s) | 378 |
| SaqAI | TTAA | 1 cut(s) | 428 |
| SatI | GCNGC | 2 cut(s) | 754, 876 |
| Sau3AI | GATC | 3 cut(s) | 133, 228, 510 |
| Sau96I | GGNCC | 2 cut(s) | 608, 776 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 2 cut(s) | 119, 705 |
| SduI | GDGCHC | 1 cut(s) | 867 |
| SfaNI | GCATC | 3 cut(s) | 174, 226, 862 |
| SinI | GGWCC | 2 cut(s) | 608, 776 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 182, 714, 870 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| Sse9I | AATT | 6 cut(s) | 361, 383, 429, 465, 541, 637 |
| SsiI | CCGC | 2 cut(s) | 653, 876 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 3 cut(s) | 15, 260, 750 |
| StyD4I | CCNGG | 2 cut(s) | 117, 703 |
| TaiI | ACGT | 2 cut(s) | 193, 604 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 227 |
| TasI | AATT | 6 cut(s) | 361, 383, 429, 465, 541, 637 |
| TatI | WGTACW | 1 cut(s) | 219 |
| TauI | GCSGC | 1 cut(s) | 878 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| Tru1I | TTAA | 1 cut(s) | 428 |
| Tru9I | TTAA | 1 cut(s) | 428 |
| TseI | GCWGC | 1 cut(s) | 753 |
| TspDTI | ATGAA | 4 cut(s) | 24, 376, 521, 873 |
| VneI | GTGCAC | 1 cut(s) | 863 |
| VpaK11BI | GGWCC | 2 cut(s) | 608, 776 |
| XceI | RCATGY | 2 cut(s) | 226, 681 |
| XmiI | GTMKAC | 1 cut(s) | 796 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 3 cut(s) | 15, 260, 750 |
| ZraI | GACGTC | 1 cut(s) | 191 |