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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 542, 701 |
| AccI | GTMKAC | 1 cut(s) | 413 |
| AciI | CCGC | 2 cut(s) | 145, 627 |
| AclWI | GGATC | 3 cut(s) | 251, 321, 425 |
| AcoI | YGGCCR | 2 cut(s) | 529, 742 |
| AcyI | GRCGYC | 6 cut(s) | 543, 658, 690, 702, 720, 750 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 711, 715, 740 |
| AgsI | TTSAA | 1 cut(s) | 580 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 3 cut(s) | 262, 272, 647 |
| AluI | AGCT | 3 cut(s) | 262, 272, 647 |
| Alw21I | GWGCWC | 1 cut(s) | 264 |
| Alw26I | GTCTC | 2 cut(s) | 76, 196 |
| AlwI | GGATC | 3 cut(s) | 251, 321, 425 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 635 |
| AoxI | GGCC | 4 cut(s) | 529, 666, 742, 771 |
| ApaI | GGGCCC | 1 cut(s) | 670 |
| ApeKI | GCWGC | 2 cut(s) | 629, 644 |
| AspLEI | GCGC | 3 cut(s) | 545, 586, 704 |
| AspS9I | GGNCC | 3 cut(s) | 666, 667, 772 |
| AsuC2I | CCSGG | 1 cut(s) | 350 |
| BaeGI | GKGCMC | 1 cut(s) | 670 |
| BalI | TGGCCA | 2 cut(s) | 531, 744 |
| BanI | GGYRCC | 2 cut(s) | 542, 701 |
| BanII | GRGCYC | 3 cut(s) | 264, 387, 670 |
| BauI | CACGAG | 1 cut(s) | 681 |
| BbsI | GAAGAC | 2 cut(s) | 57, 176 |
| Bbv12I | GWGCWC | 1 cut(s) | 264 |
| BbvI | GCAGC | 2 cut(s) | 641, 656 |
| BccI | CCATC | 3 cut(s) | 126, 196, 570 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 215, 249 |
| BcnI | CCSGG | 1 cut(s) | 350 |
| BcoDI | GTCTC | 2 cut(s) | 76, 196 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BfoI | RGCGCY | 3 cut(s) | 546, 587, 705 |
| BisI | GCNGC | 2 cut(s) | 630, 645 |
| BlsI | GCNGC | 2 cut(s) | 631, 646 |
| Bme1390I | CCNGG | 1 cut(s) | 350 |
| BmgT120I | GGNCC | 3 cut(s) | 666, 667, 772 |
| BmiI | GGNNCC | 7 cut(s) | 386, 485, 544, 668, 669, 703, 774 |
| BmrFI | CCNGG | 1 cut(s) | 350 |
| BmrI | ACTGGG | 1 cut(s) | 732 |
| BmsI | GCATC | 1 cut(s) | 641 |
| BmuI | ACTGGG | 1 cut(s) | 732 |
| BpiI | GAAGAC | 2 cut(s) | 57, 176 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BpuMI | CCSGG | 1 cut(s) | 350 |
| Bsa29I | ATCGAT | 1 cut(s) | 225 |
| BsaHI | GRCGYC | 6 cut(s) | 543, 658, 690, 702, 720, 750 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 4 cut(s) | 330, 709, 723, 768 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 711, 715, 740 |
| Bse1I | ACTGG | 2 cut(s) | 28, 738 |
| Bse3DI | GCAATG | 1 cut(s) | 526 |
| BseCI | ATCGAT | 1 cut(s) | 225 |
| BseDI | CCNNGG | 4 cut(s) | 330, 709, 723, 768 |
| BseGI | GGATG | 1 cut(s) | 22 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 711, 715, 740 |
| BseMI | GCAATG | 1 cut(s) | 526 |
| BseNI | ACTGG | 2 cut(s) | 28, 738 |
| BseSI | GKGCMC | 1 cut(s) | 670 |
| BseXI | GCAGC | 2 cut(s) | 641, 656 |
| BshFI | GGCC | 4 cut(s) | 531, 668, 744, 773 |
| BshNI | GGYRCC | 2 cut(s) | 542, 701 |
| BshVI | ATCGAT | 1 cut(s) | 225 |
| BsiHKAI | GWGCWC | 1 cut(s) | 264 |
| BsiSI | CCGG | 1 cut(s) | 350 |
| BslFI | GGGAC | 2 cut(s) | 662, 669 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 711, 715, 740 |
| BsmAI | GTCTC | 2 cut(s) | 76, 196 |
| BsmBI | CGTCTC | 1 cut(s) | 196 |
| BsmFI | GGGAC | 2 cut(s) | 662, 669 |
| BsnI | GGCC | 4 cut(s) | 531, 668, 744, 773 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp120I | GGGCCC | 1 cut(s) | 666 |
| Bsp1286I | GDGCHC | 3 cut(s) | 264, 387, 670 |
| Bsp143I | GATC | 3 cut(s) | 243, 326, 430 |
| Bsp19I | CCATGG | 3 cut(s) | 709, 723, 768 |
| BspACI | CCGC | 2 cut(s) | 145, 627 |
| BspANI | GGCC | 4 cut(s) | 531, 668, 744, 773 |
| BspDI | ATCGAT | 1 cut(s) | 225 |
| BspHI | TCATGA | 1 cut(s) | 256 |
| BspLI | GGNNCC | 7 cut(s) | 386, 485, 544, 668, 669, 703, 774 |
| BspPI | GGATC | 3 cut(s) | 251, 321, 425 |
| BspT107I | GGYRCC | 2 cut(s) | 542, 701 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrDI | GCAATG | 1 cut(s) | 526 |
| BsrI | ACTGG | 2 cut(s) | 28, 738 |
| BssECI | CCNNGG | 4 cut(s) | 330, 709, 723, 768 |
| BssMI | GATC | 3 cut(s) | 243, 326, 430 |
| BssNAI | GTATAC | 1 cut(s) | 414 |
| BssNI | GRCGYC | 6 cut(s) | 543, 658, 690, 702, 720, 750 |
| BssSI | CACGAG | 1 cut(s) | 681 |
| BssT1I | CCWWGG | 3 cut(s) | 709, 723, 768 |
| Bst1107I | GTATAC | 1 cut(s) | 414 |
| Bst2BI | CACGAG | 1 cut(s) | 681 |
| Bst6I | CTCTTC | 1 cut(s) | 484 |
| BstACI | GRCGYC | 6 cut(s) | 543, 658, 690, 702, 720, 750 |
| BstDEI | CTNAG | 4 cut(s) | 210, 375, 407, 555 |
| BstDSI | CCRYGG | 4 cut(s) | 330, 709, 723, 768 |
| BstEII | GGTNACC | 1 cut(s) | 458 |
| BstF5I | GGATG | 1 cut(s) | 22 |
| BstH2I | RGCGCY | 3 cut(s) | 546, 587, 705 |
| BstHHI | GCGC | 3 cut(s) | 545, 586, 704 |
| BstKTI | GATC | 3 cut(s) | 246, 329, 433 |
| BstMAI | GTCTC | 2 cut(s) | 76, 196 |
| BstMBI | GATC | 3 cut(s) | 243, 326, 430 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 581, 629, 758 |
| BstNSI | RCATGY | 1 cut(s) | 761 |
| BstPI | GGTNACC | 1 cut(s) | 458 |
| BstSCI | CCNGG | 1 cut(s) | 348 |
| BstSLI | GKGCMC | 1 cut(s) | 670 |
| BstV1I | GCAGC | 2 cut(s) | 641, 656 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 176 |
| BstX2I | RGATCY | 1 cut(s) | 326 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 539 |
| BstYI | RGATCY | 1 cut(s) | 326 |
| BstZ17I | GTATAC | 1 cut(s) | 414 |
| Bsu15I | ATCGAT | 1 cut(s) | 225 |
| BsuRI | GGCC | 4 cut(s) | 531, 668, 744, 773 |
| BsuTUI | ATCGAT | 1 cut(s) | 225 |
| BtgI | CCRYGG | 4 cut(s) | 330, 709, 723, 768 |
| BtgZI | GCGATG | 1 cut(s) | 170 |
| BtsCI | GGATG | 1 cut(s) | 22 |
| BtsIMutI | CAGTG | 1 cut(s) | 745 |
| CaiI | CAGNNNCTG | 1 cut(s) | 635 |
| CciI | TCATGA | 1 cut(s) | 256 |
| CfoI | GCGC | 3 cut(s) | 545, 586, 704 |
| Cfr13I | GGNCC | 3 cut(s) | 666, 667, 772 |
| ClaI | ATCGAT | 1 cut(s) | 225 |
| CseI | GACGC | 5 cut(s) | 581, 666, 698, 728, 758 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 9 cut(s) | 257, 293, 533, 710, 724, 746, 758, 769, 783 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 4 cut(s) | 210, 375, 407, 555 |
| DinI | GGCGCC | 2 cut(s) | 544, 703 |
| DpnI | GATC | 3 cut(s) | 245, 328, 432 |
| DpnII | GATC | 3 cut(s) | 243, 326, 430 |
| EaeI | YGGCCR | 2 cut(s) | 529, 742 |
| Eam1104I | CTCTTC | 1 cut(s) | 484 |
| EarI | CTCTTC | 1 cut(s) | 484 |
| Ecl136II | GAGCTC | 1 cut(s) | 262 |
| Eco130I | CCWWGG | 3 cut(s) | 709, 723, 768 |
| Eco24I | GRGCYC | 3 cut(s) | 264, 387, 670 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 262 |
| Eco91I | GGTNACC | 1 cut(s) | 458 |
| EcoICRI | GAGCTC | 1 cut(s) | 262 |
| EcoO109I | RGGNCCY | 2 cut(s) | 666, 667 |
| EcoO65I | GGTNACC | 1 cut(s) | 458 |
| EcoT14I | CCWWGG | 3 cut(s) | 709, 723, 768 |
| EcoT38I | GRGCYC | 3 cut(s) | 264, 387, 670 |
| EgeI | GGCGCC | 2 cut(s) | 544, 703 |
| EheI | GGCGCC | 2 cut(s) | 544, 703 |
| ErhI | CCWWGG | 3 cut(s) | 709, 723, 768 |
| Esp3I | CGTCTC | 1 cut(s) | 196 |
| FaeI | CATG | 9 cut(s) | 260, 296, 536, 713, 727, 749, 761, 772, 786 |
| FaqI | GGGAC | 2 cut(s) | 662, 669 |
| FatI | CATG | 9 cut(s) | 256, 292, 532, 709, 723, 745, 757, 768, 782 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FblI | GTMKAC | 1 cut(s) | 413 |
| Fnu4HI | GCNGC | 2 cut(s) | 630, 645 |
| FokI | GGATG | 1 cut(s) | 29 |
| FriOI | GRGCYC | 3 cut(s) | 264, 387, 670 |
| Fsp4HI | GCNGC | 2 cut(s) | 630, 645 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GlaI | GCGC | 3 cut(s) | 544, 585, 703 |
| GluI | GCNGC | 2 cut(s) | 630, 645 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 3 cut(s) | 546, 587, 705 |
| HaeIII | GGCC | 4 cut(s) | 531, 668, 744, 773 |
| HapII | CCGG | 1 cut(s) | 350 |
| HgaI | GACGC | 5 cut(s) | 581, 666, 698, 728, 758 |
| HhaI | GCGC | 3 cut(s) | 545, 586, 704 |
| Hin1I | GRCGYC | 6 cut(s) | 543, 658, 690, 702, 720, 750 |
| Hin1II | CATG | 9 cut(s) | 260, 296, 536, 713, 727, 749, 761, 772, 786 |
| Hin6I | GCGC | 3 cut(s) | 543, 584, 702 |
| HinP1I | GCGC | 3 cut(s) | 543, 584, 702 |
| HinfI | GANTC | 5 cut(s) | 4, 20, 172, 222, 353 |
| HpaII | CCGG | 1 cut(s) | 350 |
| Hpy166II | GTNNAC | 2 cut(s) | 414, 497 |
| Hpy188I | TCNGA | 1 cut(s) | 430 |
| Hpy188III | TCNNGA | 5 cut(s) | 116, 257, 324, 420, 683 |
| Hpy8I | GTNNAC | 2 cut(s) | 414, 497 |
| HpyAV | CCTTC | 3 cut(s) | 54, 193, 234 |
| HpyCH4IV | ACGT | 2 cut(s) | 96, 499 |
| HpyCH4V | TGCA | 3 cut(s) | 197, 236, 644 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 581, 629, 758 |
| HpyF3I | CTNAG | 4 cut(s) | 210, 375, 407, 555 |
| HpySE526I | ACGT | 2 cut(s) | 96, 499 |
| Hsp92I | GRCGYC | 6 cut(s) | 543, 658, 690, 702, 720, 750 |
| Hsp92II | CATG | 9 cut(s) | 260, 296, 536, 713, 727, 749, 761, 772, 786 |
| HspAI | GCGC | 3 cut(s) | 543, 584, 702 |
| KasI | GGCGCC | 2 cut(s) | 542, 701 |
| Kzo9I | GATC | 3 cut(s) | 243, 326, 430 |
| LmnI | GCTCC | 3 cut(s) | 30, 269, 390 |
| Lsp1109I | GCAGC | 2 cut(s) | 641, 656 |
| LweI | GCATC | 1 cut(s) | 641 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeII | ACGT | 2 cut(s) | 96, 499 |
| MaeIII | GTNAC | 2 cut(s) | 101, 458 |
| MalI | GATC | 3 cut(s) | 245, 328, 432 |
| MboI | GATC | 3 cut(s) | 243, 326, 430 |
| MboII | GAAGA | 6 cut(s) | 59, 62, 92, 181, 322, 501 |
| MflI | RGATCY | 1 cut(s) | 326 |
| MhlI | GDGCHC | 3 cut(s) | 264, 387, 670 |
| MlsI | TGGCCA | 2 cut(s) | 531, 744 |
| MluCI | AATT | 2 cut(s) | 319, 358 |
| MluNI | TGGCCA | 2 cut(s) | 531, 744 |
| Mly113I | GGCGCC | 2 cut(s) | 543, 702 |
| MlyI | GAGTC | 1 cut(s) | 166 |
| Mox20I | TGGCCA | 2 cut(s) | 531, 744 |
| MscI | TGGCCA | 2 cut(s) | 531, 744 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 537, 567 |
| Msp20I | TGGCCA | 2 cut(s) | 531, 744 |
| MspA1I | CMGCKG | 1 cut(s) | 647 |
| MspI | CCGG | 1 cut(s) | 350 |
| MspR9I | CCNGG | 1 cut(s) | 350 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 581, 629, 758 |
| NarI | GGCGCC | 2 cut(s) | 543, 702 |
| NciI | CCSGG | 1 cut(s) | 350 |
| NcoI | CCATGG | 3 cut(s) | 709, 723, 768 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 243, 326, 430 |
| NlaIII | CATG | 9 cut(s) | 260, 296, 536, 713, 727, 749, 761, 772, 786 |
| NlaIV | GGNNCC | 7 cut(s) | 386, 485, 544, 668, 669, 703, 774 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| NspI | RCATGY | 1 cut(s) | 761 |
| PagI | TCATGA | 1 cut(s) | 256 |
| PfeI | GAWTC | 3 cut(s) | 20, 222, 353 |
| PfoI | TCCNGGA | 1 cut(s) | 348 |
| PkrI | GCNGC | 2 cut(s) | 631, 646 |
| PleI | GAGTC | 1 cut(s) | 166 |
| PluTI | GGCGCC | 2 cut(s) | 546, 705 |
| PpsI | GAGTC | 1 cut(s) | 166 |
| Psp124BI | GAGCTC | 1 cut(s) | 264 |
| PspEI | GGTNACC | 1 cut(s) | 458 |
| PspN4I | GGNNCC | 7 cut(s) | 386, 485, 544, 668, 669, 703, 774 |
| PspOMI | GGGCCC | 1 cut(s) | 666 |
| PspPI | GGNCC | 3 cut(s) | 666, 667, 772 |
| PstNI | CAGNNNCTG | 1 cut(s) | 635 |
| PsuI | RGATCY | 1 cut(s) | 326 |
| PvuII | CAGCTG | 1 cut(s) | 647 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 537, 567 |
| SacI | GAGCTC | 1 cut(s) | 264 |
| SatI | GCNGC | 2 cut(s) | 630, 645 |
| Sau3AI | GATC | 3 cut(s) | 243, 326, 430 |
| Sau96I | GGNCC | 3 cut(s) | 666, 667, 772 |
| SchI | GAGTC | 1 cut(s) | 166 |
| ScrFI | CCNGG | 1 cut(s) | 350 |
| SduI | GDGCHC | 3 cut(s) | 264, 387, 670 |
| SfaNI | GCATC | 1 cut(s) | 641 |
| SfoI | GGCGCC | 2 cut(s) | 544, 703 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 537, 567 |
| Sse9I | AATT | 2 cut(s) | 319, 358 |
| SsiI | CCGC | 2 cut(s) | 145, 627 |
| SspDI | GGCGCC | 2 cut(s) | 542, 701 |
| SspI | AATATT | 1 cut(s) | 301 |
| SspMI | CTAG | 1 cut(s) | 122 |
| SstI | GAGCTC | 1 cut(s) | 264 |
| StyD4I | CCNGG | 1 cut(s) | 348 |
| StyI | CCWWGG | 3 cut(s) | 709, 723, 768 |
| TaiI | ACGT | 2 cut(s) | 99, 502 |
| TaqI | TCGA | 5 cut(s) | 78, 220, 225, 323, 603 |
| TasI | AATT | 2 cut(s) | 319, 358 |
| TfiI | GAWTC | 3 cut(s) | 20, 222, 353 |
| TscAI | CASTG | 1 cut(s) | 745 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| TseI | GCWGC | 2 cut(s) | 629, 644 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 4 cut(s) | 56, 60, 245, 290 |
| TspGWI | ACGGA | 3 cut(s) | 89, 319, 496 |
| TspRI | CASTG | 1 cut(s) | 745 |
| XceI | RCATGY | 1 cut(s) | 761 |
| XmiI | GTMKAC | 1 cut(s) | 413 |
| XspI | CTAG | 1 cut(s) | 122 |