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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 969 |
| AccB1I | GGYRCC | 6 cut(s) | 91, 933, 1058, 1082, 1157, 1238 |
| AccII | CGCG | 1 cut(s) | 918 |
| AccIII | TCCGGA | 1 cut(s) | 360 |
| AciI | CCGC | 4 cut(s) | 86, 89, 724, 1062 |
| AclWI | GGATC | 2 cut(s) | 656, 914 |
| AcoI | YGGCCR | 3 cut(s) | 105, 125, 1069 |
| AcsI | RAATTY | 2 cut(s) | 791, 1306 |
| AcyI | GRCGYC | 4 cut(s) | 934, 1083, 1221, 1239 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 103, 130, 1183, 1187 |
| AgsI | TTSAA | 7 cut(s) | 8, 26, 56, 626, 739, 1120, 1274 |
| AjiI | CACGTC | 2 cut(s) | 286, 334 |
| AjnI | CCWGG | 2 cut(s) | 68, 492 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 651, 683 |
| AluBI | AGCT | 4 cut(s) | 14, 137, 518, 524 |
| AluI | AGCT | 4 cut(s) | 14, 137, 518, 524 |
| Alw21I | GWGCWC | 1 cut(s) | 945 |
| Alw26I | GTCTC | 1 cut(s) | 859 |
| AlwI | GGATC | 2 cut(s) | 656, 914 |
| Ama87I | CYCGRG | 1 cut(s) | 482 |
| Aor13HI | TCCGGA | 1 cut(s) | 360 |
| AoxI | GGCC | 7 cut(s) | 105, 125, 259, 273, 456, 1069, 1295 |
| ApeKI | GCWGC | 3 cut(s) | 151, 542, 1253 |
| ApoI | RAATTY | 2 cut(s) | 791, 1306 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 768 |
| AspA2I | CCTAGG | 2 cut(s) | 1181, 1243 |
| AspLEI | GCGC | 4 cut(s) | 920, 936, 1085, 1241 |
| AspS9I | GGNCC | 6 cut(s) | 260, 274, 297, 321, 971, 1296 |
| AsuHPI | GGTGA | 2 cut(s) | 1252, 1259 |
| AvaI | CYCGRG | 1 cut(s) | 482 |
| AvaII | GGWCC | 3 cut(s) | 297, 321, 971 |
| AvrII | CCTAGG | 2 cut(s) | 1181, 1243 |
| AxyI | CCTNAGG | 1 cut(s) | 947 |
| BalI | TGGCCA | 1 cut(s) | 1071 |
| BanI | GGYRCC | 6 cut(s) | 91, 933, 1058, 1082, 1157, 1238 |
| BbsI | GAAGAC | 1 cut(s) | 839 |
| Bbv12I | GWGCWC | 1 cut(s) | 945 |
| BbvI | GCAGC | 3 cut(s) | 163, 554, 1240 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 878, 912 |
| BciT130I | CCWGG | 2 cut(s) | 70, 494 |
| BciVI | GTATCC | 2 cut(s) | 466, 946 |
| BcoDI | GTCTC | 1 cut(s) | 859 |
| BfaI | CTAG | 4 cut(s) | 489, 701, 1182, 1244 |
| BfmI | CTRYAG | 1 cut(s) | 301 |
| BfoI | RGCGCY | 3 cut(s) | 937, 1086, 1242 |
| BfuI | GTATCC | 2 cut(s) | 466, 946 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 551 |
| BisI | GCNGC | 5 cut(s) | 87, 90, 152, 543, 1254 |
| BlnI | CCTAGG | 2 cut(s) | 1181, 1243 |
| BlsI | GCNGC | 5 cut(s) | 88, 91, 153, 544, 1255 |
| Bme1390I | CCNGG | 2 cut(s) | 70, 494 |
| Bme18I | GGWCC | 3 cut(s) | 297, 321, 971 |
| BmeT110I | CYCGRG | 1 cut(s) | 482 |
| BmgBI | CACGTC | 2 cut(s) | 286, 334 |
| BmgT120I | GGNCC | 6 cut(s) | 260, 274, 297, 321, 971, 1296 |
| BmiI | GGNNCC | 8 cut(s) | 93, 322, 323, 935, 1060, 1084, 1159, 1240 |
| BmrFI | CCNGG | 2 cut(s) | 70, 494 |
| BmsI | GCATC | 3 cut(s) | 348, 457, 1240 |
| BpiI | GAAGAC | 1 cut(s) | 839 |
| BpmI | CTGGAG | 1 cut(s) | 590 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1292 |
| BpuEI | CTTGAG | 2 cut(s) | 437, 504 |
| Bsa29I | ATCGAT | 1 cut(s) | 888 |
| BsaHI | GRCGYC | 4 cut(s) | 934, 1083, 1221, 1239 |
| BsaJI | CCNNGG | 4 cut(s) | 250, 1181, 1212, 1243 |
| BsaWI | WCCGGW | 2 cut(s) | 130, 360 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 103, 130, 1183, 1187 |
| Bse118I | RCCGGY | 3 cut(s) | 82, 103, 123 |
| Bse1I | ACTGG | 2 cut(s) | 412, 607 |
| Bse21I | CCTNAGG | 1 cut(s) | 947 |
| Bse3DI | GCAATG | 1 cut(s) | 679 |
| BseAI | TCCGGA | 1 cut(s) | 360 |
| BseBI | CCWGG | 2 cut(s) | 70, 494 |
| BseCI | ATCGAT | 1 cut(s) | 888 |
| BseDI | CCNNGG | 4 cut(s) | 250, 1181, 1212, 1243 |
| BseGI | GGATG | 3 cut(s) | 369, 573, 1222 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 103, 130, 1183, 1187 |
| BseMI | GCAATG | 1 cut(s) | 679 |
| BseMII | CTCAG | 1 cut(s) | 1306 |
| BseNI | ACTGG | 2 cut(s) | 412, 607 |
| BseXI | GCAGC | 3 cut(s) | 163, 554, 1240 |
| Bsh1236I | CGCG | 1 cut(s) | 918 |
| BshFI | GGCC | 7 cut(s) | 107, 127, 261, 275, 458, 1071, 1297 |
| BshNI | GGYRCC | 6 cut(s) | 91, 933, 1058, 1082, 1157, 1238 |
| BshVI | ATCGAT | 1 cut(s) | 888 |
| BsiHKAI | GWGCWC | 1 cut(s) | 945 |
| BsiHKCI | CYCGRG | 1 cut(s) | 482 |
| BsiSI | CCGG | 5 cut(s) | 83, 104, 124, 131, 361 |
| BslFI | GGGAC | 2 cut(s) | 334, 1181 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 103, 130, 1183, 1187 |
| BsmAI | GTCTC | 1 cut(s) | 859 |
| BsmFI | GGGAC | 2 cut(s) | 334, 1181 |
| BsnI | GGCC | 7 cut(s) | 107, 127, 261, 275, 458, 1071, 1297 |
| BsoBI | CYCGRG | 1 cut(s) | 482 |
| Bsp1286I | GDGCHC | 1 cut(s) | 945 |
| Bsp13I | TCCGGA | 1 cut(s) | 360 |
| Bsp143I | GATC | 3 cut(s) | 648, 807, 906 |
| Bsp19I | CCATGG | 1 cut(s) | 1212 |
| BspACI | CCGC | 4 cut(s) | 86, 89, 724, 1062 |
| BspANI | GGCC | 7 cut(s) | 107, 127, 261, 275, 458, 1071, 1297 |
| BspCNI | CTCAG | 1 cut(s) | 1305 |
| BspDI | ATCGAT | 1 cut(s) | 888 |
| BspEI | TCCGGA | 1 cut(s) | 360 |
| BspFNI | CGCG | 1 cut(s) | 918 |
| BspLI | GGNNCC | 8 cut(s) | 93, 322, 323, 935, 1060, 1084, 1159, 1240 |
| BspPI | GGATC | 2 cut(s) | 656, 914 |
| BspT107I | GGYRCC | 6 cut(s) | 91, 933, 1058, 1082, 1157, 1238 |
| BsrDI | GCAATG | 1 cut(s) | 679 |
| BsrFI | RCCGGY | 3 cut(s) | 82, 103, 123 |
| BsrI | ACTGG | 2 cut(s) | 412, 607 |
| BssAI | RCCGGY | 3 cut(s) | 82, 103, 123 |
| BssECI | CCNNGG | 4 cut(s) | 250, 1181, 1212, 1243 |
| BssMI | GATC | 3 cut(s) | 648, 807, 906 |
| BssNI | GRCGYC | 4 cut(s) | 934, 1083, 1221, 1239 |
| BssT1I | CCWWGG | 4 cut(s) | 250, 1181, 1212, 1243 |
| Bst2UI | CCWGG | 2 cut(s) | 70, 494 |
| Bst4CI | ACNGT | 2 cut(s) | 508, 1195 |
| Bst6I | CTCTTC | 1 cut(s) | 171 |
| BstACI | GRCGYC | 4 cut(s) | 934, 1083, 1221, 1239 |
| BstC8I | GCNNGC | 4 cut(s) | 273, 446, 516, 1189 |
| BstDEI | CTNAG | 6 cut(s) | 547, 873, 924, 947, 1292, 1359 |
| BstDSI | CCRYGG | 1 cut(s) | 1212 |
| BstF5I | GGATG | 3 cut(s) | 369, 573, 1222 |
| BstFNI | CGCG | 1 cut(s) | 918 |
| BstH2I | RGCGCY | 3 cut(s) | 937, 1086, 1242 |
| BstHHI | GCGC | 4 cut(s) | 920, 936, 1085, 1241 |
| BstKTI | GATC | 3 cut(s) | 651, 810, 909 |
| BstMAI | GTCTC | 1 cut(s) | 859 |
| BstMBI | GATC | 3 cut(s) | 648, 807, 906 |
| BstNI | CCWGG | 2 cut(s) | 70, 494 |
| BstSCI | CCNGG | 2 cut(s) | 68, 492 |
| BstSFI | CTRYAG | 1 cut(s) | 301 |
| BstUI | CGCG | 1 cut(s) | 918 |
| BstV1I | GCAGC | 3 cut(s) | 163, 554, 1240 |
| BstV2I | GAAGAC | 1 cut(s) | 839 |
| BstX2I | RGATCY | 1 cut(s) | 648 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1079 |
| BstYI | RGATCY | 1 cut(s) | 648 |
| Bsu15I | ATCGAT | 1 cut(s) | 888 |
| Bsu36I | CCTNAGG | 1 cut(s) | 947 |
| BsuI | GTATCC | 2 cut(s) | 466, 946 |
| BsuRI | GGCC | 7 cut(s) | 107, 127, 261, 275, 458, 1071, 1297 |
| BsuTUI | ATCGAT | 1 cut(s) | 888 |
| BtgI | CCRYGG | 1 cut(s) | 1212 |
| BtgZI | GCGATG | 1 cut(s) | 833 |
| BtrI | CACGTC | 2 cut(s) | 286, 334 |
| BtsCI | GGATG | 3 cut(s) | 369, 573, 1222 |
| BtsI | GCAGTG | 2 cut(s) | 277, 325 |
| BtsIMutI | CAGTG | 5 cut(s) | 263, 277, 325, 349, 614 |
| Cac8I | GCNNGC | 4 cut(s) | 273, 446, 516, 1189 |
| CfoI | GCGC | 4 cut(s) | 920, 936, 1085, 1241 |
| Cfr10I | RCCGGY | 3 cut(s) | 82, 103, 123 |
| Cfr13I | GGNCC | 6 cut(s) | 260, 274, 297, 321, 971, 1296 |
| ClaI | ATCGAT | 1 cut(s) | 888 |
| CseI | GACGC | 4 cut(s) | 277, 1121, 1210, 1297 |
| CviAII | CATG | 3 cut(s) | 1073, 1205, 1213 |
| DdeI | CTNAG | 6 cut(s) | 547, 873, 924, 947, 1292, 1359 |
| DinI | GGCGCC | 3 cut(s) | 935, 1084, 1240 |
| DpnI | GATC | 3 cut(s) | 650, 809, 908 |
| DpnII | GATC | 3 cut(s) | 648, 807, 906 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 969 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 969 |
| EaeI | YGGCCR | 3 cut(s) | 105, 125, 1069 |
| Eam1104I | CTCTTC | 1 cut(s) | 171 |
| EarI | CTCTTC | 1 cut(s) | 171 |
| Eco130I | CCWWGG | 4 cut(s) | 250, 1181, 1212, 1243 |
| Eco32I | GATATC | 1 cut(s) | 439 |
| Eco47I | GGWCC | 3 cut(s) | 297, 321, 971 |
| Eco81I | CCTNAGG | 1 cut(s) | 947 |
| Eco88I | CYCGRG | 1 cut(s) | 482 |
| EcoO109I | RGGNCCY | 2 cut(s) | 297, 321 |
| EcoRI | GAATTC | 1 cut(s) | 791 |
| EcoRII | CCWGG | 2 cut(s) | 68, 492 |
| EcoRV | GATATC | 1 cut(s) | 439 |
| EcoT14I | CCWWGG | 4 cut(s) | 250, 1181, 1212, 1243 |
| EgeI | GGCGCC | 3 cut(s) | 935, 1084, 1240 |
| EheI | GGCGCC | 3 cut(s) | 935, 1084, 1240 |
| ErhI | CCWWGG | 4 cut(s) | 250, 1181, 1212, 1243 |
| FaeI | CATG | 3 cut(s) | 1076, 1208, 1216 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 930, 962 |
| FaqI | GGGAC | 2 cut(s) | 334, 1181 |
| FatI | CATG | 3 cut(s) | 1072, 1204, 1212 |
| FauNDI | CATATG | 1 cut(s) | 591 |
| Fnu4HI | GCNGC | 5 cut(s) | 87, 90, 152, 543, 1254 |
| FokI | GGATG | 3 cut(s) | 376, 560, 1229 |
| Fsp4HI | GCNGC | 5 cut(s) | 87, 90, 152, 543, 1254 |
| FspBI | CTAG | 4 cut(s) | 489, 701, 1182, 1244 |
| GlaI | GCGC | 4 cut(s) | 919, 935, 1084, 1240 |
| GluI | GCNGC | 5 cut(s) | 87, 90, 152, 543, 1254 |
| GsuI | CTGGAG | 1 cut(s) | 590 |
| HaeII | RGCGCY | 3 cut(s) | 937, 1086, 1242 |
| HaeIII | GGCC | 7 cut(s) | 107, 127, 261, 275, 458, 1071, 1297 |
| HapII | CCGG | 5 cut(s) | 83, 104, 124, 131, 361 |
| HgaI | GACGC | 4 cut(s) | 277, 1121, 1210, 1297 |
| HhaI | GCGC | 4 cut(s) | 920, 936, 1085, 1241 |
| Hin1I | GRCGYC | 4 cut(s) | 934, 1083, 1221, 1239 |
| Hin1II | CATG | 3 cut(s) | 1076, 1208, 1216 |
| Hin6I | GCGC | 4 cut(s) | 918, 934, 1083, 1239 |
| HinP1I | GCGC | 4 cut(s) | 918, 934, 1083, 1239 |
| HincII | GTYRAC | 1 cut(s) | 1037 |
| HindII | GTYRAC | 1 cut(s) | 1037 |
| HindIII | AAGCTT | 1 cut(s) | 522 |
| HinfI | GANTC | 9 cut(s) | 4, 65, 73, 465, 478, 583, 683, 835, 885 |
| HpaII | CCGG | 5 cut(s) | 83, 104, 124, 131, 361 |
| HphI | GGTGA | 2 cut(s) | 1252, 1259 |
| Hpy166II | GTNNAC | 2 cut(s) | 1037, 1171 |
| Hpy188I | TCNGA | 4 cut(s) | 415, 763, 1107, 1287 |
| Hpy188III | TCNNGA | 8 cut(s) | 8, 77, 361, 434, 482, 680, 749, 960 |
| Hpy8I | GTNNAC | 2 cut(s) | 1037, 1171 |
| HpyAV | CCTTC | 4 cut(s) | 633, 924, 989, 1046 |
| HpyCH4III | ACNGT | 2 cut(s) | 508, 1195 |
| HpyCH4IV | ACGT | 3 cut(s) | 285, 333, 1039 |
| HpyCH4V | TGCA | 4 cut(s) | 612, 860, 899, 1256 |
| HpyF3I | CTNAG | 6 cut(s) | 547, 873, 924, 947, 1292, 1359 |
| HpySE526I | ACGT | 3 cut(s) | 285, 333, 1039 |
| Hsp92I | GRCGYC | 4 cut(s) | 934, 1083, 1221, 1239 |
| Hsp92II | CATG | 3 cut(s) | 1076, 1208, 1216 |
| HspAI | GCGC | 4 cut(s) | 918, 934, 1083, 1239 |
| KasI | GGCGCC | 3 cut(s) | 933, 1082, 1238 |
| KflI | GGGWCCC | 1 cut(s) | 321 |
| Kpn2I | TCCGGA | 1 cut(s) | 360 |
| Kzo9I | GATC | 3 cut(s) | 648, 807, 906 |
| LmnI | GCTCC | 3 cut(s) | 142, 397, 609 |
| Lsp1109I | GCAGC | 3 cut(s) | 163, 554, 1240 |
| LweI | GCATC | 3 cut(s) | 348, 457, 1240 |
| MaeI | CTAG | 4 cut(s) | 489, 701, 1182, 1244 |
| MaeII | ACGT | 3 cut(s) | 285, 333, 1039 |
| MaeIII | GTNAC | 2 cut(s) | 368, 680 |
| MalI | GATC | 3 cut(s) | 650, 809, 908 |
| MboI | GATC | 3 cut(s) | 648, 807, 906 |
| MboII | GAAGA | 6 cut(s) | 68, 185, 188, 193, 671, 844 |
| MflI | RGATCY | 1 cut(s) | 648 |
| MhlI | GDGCHC | 1 cut(s) | 945 |
| MlsI | TGGCCA | 1 cut(s) | 1071 |
| MluCI | AATT | 5 cut(s) | 380, 598, 791, 979, 1306 |
| MluNI | TGGCCA | 1 cut(s) | 1071 |
| Mly113I | GGCGCC | 3 cut(s) | 934, 1083, 1239 |
| MlyI | GAGTC | 3 cut(s) | 577, 677, 829 |
| Mox20I | TGGCCA | 1 cut(s) | 1071 |
| MroI | TCCGGA | 1 cut(s) | 360 |
| MroXI | GAANNNNTTC | 1 cut(s) | 768 |
| MscI | TGGCCA | 1 cut(s) | 1071 |
| MseI | TTAA | 3 cut(s) | 312, 777, 785 |
| MslI | CAYNNNNRTG | 5 cut(s) | 578, 1077, 1107, 1230, 1233 |
| Msp20I | TGGCCA | 1 cut(s) | 1071 |
| MspI | CCGG | 5 cut(s) | 83, 104, 124, 131, 361 |
| MspR9I | CCNGG | 2 cut(s) | 70, 494 |
| MvaI | CCWGG | 2 cut(s) | 70, 494 |
| MvnI | CGCG | 1 cut(s) | 918 |
| NarI | GGCGCC | 3 cut(s) | 934, 1083, 1239 |
| NcoI | CCATGG | 1 cut(s) | 1212 |
| NdeI | CATATG | 1 cut(s) | 591 |
| NdeII | GATC | 3 cut(s) | 648, 807, 906 |
| NlaIII | CATG | 3 cut(s) | 1076, 1208, 1216 |
| NlaIV | GGNNCC | 8 cut(s) | 93, 322, 323, 935, 1060, 1084, 1159, 1240 |
| NmuCI | GTSAC | 1 cut(s) | 680 |
| PaeR7I | CTCGAG | 1 cut(s) | 482 |
| PdmI | GAANNNNTTC | 1 cut(s) | 768 |
| PfeI | GAWTC | 6 cut(s) | 4, 65, 73, 465, 478, 885 |
| PfoI | TCCNGGA | 1 cut(s) | 68 |
| PkrI | GCNGC | 5 cut(s) | 88, 91, 153, 544, 1255 |
| PleI | GAGTC | 3 cut(s) | 577, 677, 829 |
| PluTI | GGCGCC | 3 cut(s) | 937, 1086, 1242 |
| PpsI | GAGTC | 3 cut(s) | 577, 677, 829 |
| PpuMI | RGGWCCY | 2 cut(s) | 297, 321 |
| Psp5II | RGGWCCY | 2 cut(s) | 297, 321 |
| Psp6I | CCWGG | 2 cut(s) | 68, 492 |
| PspGI | CCWGG | 2 cut(s) | 68, 492 |
| PspN4I | GGNNCC | 8 cut(s) | 93, 322, 323, 935, 1060, 1084, 1159, 1240 |
| PspPI | GGNCC | 6 cut(s) | 260, 274, 297, 321, 971, 1296 |
| PspPPI | RGGWCCY | 2 cut(s) | 297, 321 |
| PsuI | RGATCY | 1 cut(s) | 648 |
| RseI | CAYNNNNRTG | 5 cut(s) | 578, 1077, 1107, 1230, 1233 |
| SaqAI | TTAA | 3 cut(s) | 312, 777, 785 |
| SatI | GCNGC | 5 cut(s) | 87, 90, 152, 543, 1254 |
| Sau3AI | GATC | 3 cut(s) | 648, 807, 906 |
| Sau96I | GGNCC | 6 cut(s) | 260, 274, 297, 321, 971, 1296 |
| SchI | GAGTC | 3 cut(s) | 577, 677, 829 |
| ScrFI | CCNGG | 2 cut(s) | 70, 494 |
| SduI | GDGCHC | 1 cut(s) | 945 |
| SfaNI | GCATC | 3 cut(s) | 348, 457, 1240 |
| SfcI | CTRYAG | 1 cut(s) | 301 |
| SfoI | GGCGCC | 3 cut(s) | 935, 1084, 1240 |
| Sfr274I | CTCGAG | 1 cut(s) | 482 |
| SinI | GGWCC | 3 cut(s) | 297, 321, 971 |
| SlaI | CTCGAG | 1 cut(s) | 482 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 578, 1077, 1107, 1230, 1233 |
| SmlI | CTYRAG | 3 cut(s) | 452, 482, 519 |
| SmoI | CTYRAG | 3 cut(s) | 452, 482, 519 |
| Sse9I | AATT | 5 cut(s) | 380, 598, 791, 979, 1306 |
| SsiI | CCGC | 4 cut(s) | 86, 89, 724, 1062 |
| SspDI | GGCGCC | 3 cut(s) | 933, 1082, 1238 |
| SspI | AATATT | 1 cut(s) | 159 |
| SspMI | CTAG | 4 cut(s) | 489, 701, 1182, 1244 |
| StyD4I | CCNGG | 2 cut(s) | 68, 492 |
| StyI | CCWWGG | 4 cut(s) | 250, 1181, 1212, 1243 |
| TaaI | ACNGT | 2 cut(s) | 508, 1195 |
| TaiI | ACGT | 3 cut(s) | 288, 336, 1042 |
| TaqI | TCGA | 6 cut(s) | 63, 166, 483, 657, 883, 888 |
| TasI | AATT | 5 cut(s) | 380, 598, 791, 979, 1306 |
| TauI | GCSGC | 2 cut(s) | 89, 92 |
| TfiI | GAWTC | 6 cut(s) | 4, 65, 73, 465, 478, 885 |
| Tru1I | TTAA | 3 cut(s) | 312, 777, 785 |
| Tru9I | TTAA | 3 cut(s) | 312, 777, 785 |
| TscAI | CASTG | 5 cut(s) | 270, 284, 332, 349, 614 |
| TseFI | GTSAC | 1 cut(s) | 680 |
| TseI | GCWGC | 3 cut(s) | 151, 542, 1253 |
| Tsp45I | GTSAC | 1 cut(s) | 680 |
| TspGWI | ACGGA | 2 cut(s) | 919, 1156 |
| TspRI | CASTG | 5 cut(s) | 270, 284, 332, 349, 614 |
| VpaK11BI | GGWCC | 3 cut(s) | 297, 321, 971 |
| XapI | RAATTY | 2 cut(s) | 791, 1306 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1184, 1232 |
| XhoI | CTCGAG | 1 cut(s) | 482 |
| XmaJI | CCTAGG | 2 cut(s) | 1181, 1243 |
| XmnI | GAANNNNTTC | 1 cut(s) | 768 |
| XspI | CTAG | 4 cut(s) | 489, 701, 1182, 1244 |