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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 968 |
| AccI | GTMKAC | 1 cut(s) | 787 |
| AccIII | TCCGGA | 1 cut(s) | 649 |
| AciI | CCGC | 3 cut(s) | 79, 361, 870 |
| AclWI | GGATC | 2 cut(s) | 551, 775 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcuI | CTGAAG | 1 cut(s) | 906 |
| AcyI | GRCGYC | 1 cut(s) | 951 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 250, 913, 917 |
| AgsI | TTSAA | 2 cut(s) | 376, 587 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 105 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 3 cut(s) | 155, 161, 562 |
| AluI | AGCT | 3 cut(s) | 155, 161, 562 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 3 cut(s) | 292, 496, 880 |
| AlwI | GGATC | 2 cut(s) | 551, 775 |
| Aor13HI | TCCGGA | 1 cut(s) | 649 |
| ApeKI | GCWGC | 2 cut(s) | 179, 983 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| AspA2I | CCTAGG | 2 cut(s) | 911, 973 |
| AsuHPI | GGTGA | 2 cut(s) | 974, 989 |
| AvrII | CCTAGG | 2 cut(s) | 911, 973 |
| BanI | GGYRCC | 1 cut(s) | 968 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvI | GCAGC | 2 cut(s) | 191, 970 |
| BccI | CCATC | 9 cut(s) | 92, 215, 342, 496, 534, 675, 941, 959, 963 |
| BceAI | ACGGC | 1 cut(s) | 857 |
| BciT130I | CCWGG | 1 cut(s) | 107 |
| BciVI | GTATCC | 2 cut(s) | 103, 706 |
| BcoDI | GTCTC | 3 cut(s) | 292, 496, 880 |
| BfaI | CTAG | 4 cut(s) | 126, 338, 912, 974 |
| BfmI | CTRYAG | 1 cut(s) | 534 |
| BfuI | GTATCC | 2 cut(s) | 103, 706 |
| BglII | AGATCT | 1 cut(s) | 626 |
| BisI | GCNGC | 2 cut(s) | 180, 984 |
| BlnI | CCTAGG | 2 cut(s) | 911, 973 |
| BlsI | GCNGC | 2 cut(s) | 181, 985 |
| Bme1390I | CCNGG | 1 cut(s) | 107 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 2 cut(s) | 686, 970 |
| BmrFI | CCNGG | 1 cut(s) | 107 |
| BmsI | GCATC | 3 cut(s) | 94, 817, 970 |
| BoxI | GACNNNNGTC | 1 cut(s) | 872 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 104, 141 |
| BsaHI | GRCGYC | 1 cut(s) | 951 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 2 cut(s) | 911, 973 |
| BsaWI | WCCGGW | 1 cut(s) | 649 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 250, 913, 917 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseAI | TCCGGA | 1 cut(s) | 649 |
| BseBI | CCWGG | 1 cut(s) | 107 |
| BseDI | CCNNGG | 2 cut(s) | 911, 973 |
| BseGI | GGATG | 7 cut(s) | 238, 312, 545, 600, 728, 808, 952 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 250, 913, 917 |
| BseMII | CTCAG | 1 cut(s) | 906 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseXI | GCAGC | 2 cut(s) | 191, 970 |
| BshNI | GGYRCC | 1 cut(s) | 968 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiSI | CCGG | 1 cut(s) | 650 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 250, 913, 917 |
| BsmAI | GTCTC | 3 cut(s) | 292, 496, 880 |
| BsmBI | CGTCTC | 2 cut(s) | 496, 880 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| Bsp1286I | GDGCHC | 1 cut(s) | 564 |
| Bsp13I | TCCGGA | 1 cut(s) | 649 |
| Bsp143I | GATC | 3 cut(s) | 543, 626, 780 |
| BspACI | CCGC | 3 cut(s) | 79, 361, 870 |
| BspCNI | CTCAG | 1 cut(s) | 905 |
| BspEI | TCCGGA | 1 cut(s) | 649 |
| BspHI | TCATGA | 2 cut(s) | 556, 769 |
| BspLI | GGNNCC | 2 cut(s) | 686, 970 |
| BspMAI | CTGCAG | 1 cut(s) | 538 |
| BspPI | GGATC | 2 cut(s) | 551, 775 |
| BspT107I | GGYRCC | 1 cut(s) | 968 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssECI | CCNNGG | 2 cut(s) | 911, 973 |
| BssMI | GATC | 3 cut(s) | 543, 626, 780 |
| BssNI | GRCGYC | 1 cut(s) | 951 |
| BssT1I | CCWWGG | 2 cut(s) | 911, 973 |
| Bst2UI | CCWGG | 1 cut(s) | 107 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 925 |
| BstACI | GRCGYC | 1 cut(s) | 951 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 919 |
| BstDEI | CTNAG | 5 cut(s) | 184, 675, 707, 860, 892 |
| BstF5I | GGATG | 7 cut(s) | 238, 312, 545, 600, 728, 808, 952 |
| BstKTI | GATC | 3 cut(s) | 546, 629, 783 |
| BstMAI | GTCTC | 3 cut(s) | 292, 496, 880 |
| BstMBI | GATC | 3 cut(s) | 543, 626, 780 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 691, 878, 887, 948 |
| BstNI | CCWGG | 1 cut(s) | 107 |
| BstNSI | RCATGY | 1 cut(s) | 581 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 872 |
| BstSCI | CCNGG | 1 cut(s) | 105 |
| BstSFI | CTRYAG | 1 cut(s) | 534 |
| BstV1I | GCAGC | 2 cut(s) | 191, 970 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| BsuI | GTATCC | 2 cut(s) | 103, 706 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 7 cut(s) | 238, 312, 545, 600, 728, 808, 952 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 919 |
| CciI | TCATGA | 2 cut(s) | 556, 769 |
| CseI | GACGC | 1 cut(s) | 940 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 9 cut(s) | 557, 578, 593, 770, 803, 835, 935, 943, 959 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 5 cut(s) | 184, 675, 707, 860, 892 |
| DpnI | GATC | 3 cut(s) | 545, 628, 782 |
| DpnII | GATC | 3 cut(s) | 543, 626, 780 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco130I | CCWWGG | 2 cut(s) | 911, 973 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 2 cut(s) | 56, 445 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco57I | CTGAAG | 1 cut(s) | 906 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 105 |
| EcoRV | GATATC | 2 cut(s) | 56, 445 |
| EcoT14I | CCWWGG | 2 cut(s) | 911, 973 |
| EcoT22I | ATGCAT | 1 cut(s) | 579 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| ErhI | CCWWGG | 2 cut(s) | 911, 973 |
| Esp3I | CGTCTC | 2 cut(s) | 496, 880 |
| FaeI | CATG | 9 cut(s) | 560, 581, 596, 773, 806, 838, 938, 946, 962 |
| FatI | CATG | 9 cut(s) | 556, 577, 592, 769, 802, 834, 934, 942, 958 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FblI | GTMKAC | 1 cut(s) | 787 |
| Fnu4HI | GCNGC | 2 cut(s) | 180, 984 |
| FokI | GGATG | 7 cut(s) | 245, 299, 552, 587, 735, 795, 959 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| Fsp4HI | GCNGC | 2 cut(s) | 180, 984 |
| FspBI | CTAG | 4 cut(s) | 126, 338, 912, 974 |
| GluI | GCNGC | 2 cut(s) | 180, 984 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HapII | CCGG | 1 cut(s) | 650 |
| HgaI | GACGC | 1 cut(s) | 940 |
| Hin1I | GRCGYC | 1 cut(s) | 951 |
| Hin1II | CATG | 9 cut(s) | 560, 581, 596, 773, 806, 838, 938, 946, 962 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 9 cut(s) | 102, 115, 220, 236, 320, 401, 653, 838, 850 |
| HpaII | CCGG | 1 cut(s) | 650 |
| HphI | GGTGA | 2 cut(s) | 974, 989 |
| Hpy166II | GTNNAC | 2 cut(s) | 788, 901 |
| Hpy188I | TCNGA | 2 cut(s) | 400, 886 |
| Hpy188III | TCNNGA | 8 cut(s) | 51, 71, 91, 332, 557, 624, 650, 770 |
| Hpy8I | GTNNAC | 2 cut(s) | 788, 901 |
| HpyAV | CCTTC | 2 cut(s) | 493, 749 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 925 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 5 cut(s) | 411, 509, 536, 577, 986 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 691, 878, 887, 948 |
| HpyF3I | CTNAG | 5 cut(s) | 184, 675, 707, 860, 892 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92I | GRCGYC | 1 cut(s) | 951 |
| Hsp92II | CATG | 9 cut(s) | 560, 581, 596, 773, 806, 838, 938, 946, 962 |
| Kpn2I | TCCGGA | 1 cut(s) | 649 |
| Kzo9I | GATC | 3 cut(s) | 543, 626, 780 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 690 |
| Lsp1109I | GCAGC | 2 cut(s) | 191, 970 |
| LweI | GCATC | 3 cut(s) | 94, 817, 970 |
| MaeI | CTAG | 4 cut(s) | 126, 338, 912, 974 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 4 cut(s) | 5, 317, 529, 665 |
| MalI | GATC | 3 cut(s) | 545, 628, 782 |
| MboI | GATC | 3 cut(s) | 543, 626, 780 |
| MboII | GAAGA | 4 cut(s) | 275, 278, 308, 622 |
| MfeI | CAATTG | 1 cut(s) | 42 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MhlI | GDGCHC | 1 cut(s) | 564 |
| MluCI | AATT | 6 cut(s) | 17, 42, 428, 522, 619, 658 |
| MlyI | GAGTC | 2 cut(s) | 214, 314 |
| MnlI | CCTC | 8 cut(s) | 181, 244, 368, 462, 497, 682, 892, 901 |
| Mph1103I | ATGCAT | 1 cut(s) | 579 |
| MroI | TCCGGA | 1 cut(s) | 649 |
| MseI | TTAA | 3 cut(s) | 414, 422, 702 |
| MslI | CAYNNNNRTG | 7 cut(s) | 215, 231, 452, 605, 768, 960, 963 |
| MspI | CCGG | 1 cut(s) | 650 |
| MspR9I | CCNGG | 1 cut(s) | 107 |
| MunI | CAATTG | 1 cut(s) | 42 |
| MvaI | CCWGG | 1 cut(s) | 107 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 691, 878, 887, 948 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 3 cut(s) | 543, 626, 780 |
| NlaIII | CATG | 9 cut(s) | 560, 581, 596, 773, 806, 838, 938, 946, 962 |
| NlaIV | GGNNCC | 2 cut(s) | 686, 970 |
| NmuCI | GTSAC | 2 cut(s) | 317, 665 |
| NsiI | ATGCAT | 1 cut(s) | 579 |
| NspI | RCATGY | 1 cut(s) | 581 |
| PagI | TCATGA | 2 cut(s) | 556, 769 |
| PfeI | GAWTC | 7 cut(s) | 102, 115, 236, 401, 653, 838, 850 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 2 cut(s) | 181, 985 |
| PleI | GAGTC | 2 cut(s) | 214, 314 |
| PpsI | GAGTC | 2 cut(s) | 214, 314 |
| PshAI | GACNNNNGTC | 1 cut(s) | 872 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp6I | CCWGG | 1 cut(s) | 105 |
| PspGI | CCWGG | 1 cut(s) | 105 |
| PspN4I | GGNNCC | 2 cut(s) | 686, 970 |
| PstI | CTGCAG | 1 cut(s) | 538 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 7 cut(s) | 215, 231, 452, 605, 768, 960, 963 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 3 cut(s) | 414, 422, 702 |
| SatI | GCNGC | 2 cut(s) | 180, 984 |
| Sau3AI | GATC | 3 cut(s) | 543, 626, 780 |
| SchI | GAGTC | 2 cut(s) | 214, 314 |
| ScrFI | CCNGG | 1 cut(s) | 107 |
| SduI | GDGCHC | 1 cut(s) | 564 |
| SfaNI | GCATC | 3 cut(s) | 94, 817, 970 |
| SfcI | CTRYAG | 1 cut(s) | 534 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 215, 231, 452, 605, 768, 960, 963 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 6 cut(s) | 17, 42, 428, 522, 619, 658 |
| SsiI | CCGC | 3 cut(s) | 79, 361, 870 |
| SspMI | CTAG | 4 cut(s) | 126, 338, 912, 974 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StyD4I | CCNGG | 1 cut(s) | 105 |
| StyI | CCWWGG | 2 cut(s) | 911, 973 |
| TaaI | ACNGT | 2 cut(s) | 145, 925 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 4 cut(s) | 294, 520, 623, 820 |
| TaqII | GACCGA | 1 cut(s) | 110 |
| TasI | AATT | 6 cut(s) | 17, 42, 428, 522, 619, 658 |
| TfiI | GAWTC | 7 cut(s) | 102, 115, 236, 401, 653, 838, 850 |
| Tru1I | TTAA | 3 cut(s) | 414, 422, 702 |
| Tru9I | TTAA | 3 cut(s) | 414, 422, 702 |
| TseFI | GTSAC | 2 cut(s) | 317, 665 |
| TseI | GCWGC | 2 cut(s) | 179, 983 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 665 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 545, 851 |
| TspGWI | ACGGA | 2 cut(s) | 305, 773 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XceI | RCATGY | 1 cut(s) | 581 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 914, 962 |
| XmaJI | CCTAGG | 2 cut(s) | 911, 973 |
| XmiI | GTMKAC | 1 cut(s) | 787 |
| XspI | CTAG | 4 cut(s) | 126, 338, 912, 974 |
| Zsp2I | ATGCAT | 1 cut(s) | 579 |