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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 638 |
| Acc65I | GGTACC | 1 cut(s) | 147 |
| AccB1I | GGYRCC | 2 cut(s) | 147, 751 |
| AccBSI | CCGCTC | 1 cut(s) | 84 |
| AccII | CGCG | 1 cut(s) | 591 |
| AciI | CCGC | 2 cut(s) | 82, 893 |
| AcoI | YGGCCR | 1 cut(s) | 738 |
| AcyI | GRCGYC | 1 cut(s) | 782 |
| AfaI | GTAC | 2 cut(s) | 149, 284 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 854 |
| AflIII | ACRYGT | 1 cut(s) | 171 |
| AgsI | TTSAA | 2 cut(s) | 706, 789 |
| AjiI | CACGTC | 1 cut(s) | 172 |
| AjnI | CCWGG | 1 cut(s) | 54 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 324, 356 |
| AluBI | AGCT | 6 cut(s) | 179, 191, 197, 770, 874, 925 |
| AluI | AGCT | 6 cut(s) | 179, 191, 197, 770, 874, 925 |
| Alw21I | GWGCWC | 1 cut(s) | 876 |
| Alw26I | GTCTC | 1 cut(s) | 532 |
| AoxI | GGCC | 1 cut(s) | 738 |
| ApeKI | GCWGC | 2 cut(s) | 97, 215 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 571, 603 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 441 |
| Asp718I | GGTACC | 1 cut(s) | 147 |
| AsuC2I | CCSGG | 1 cut(s) | 145 |
| AsuHPI | GGTGA | 1 cut(s) | 882 |
| AsuII | TTCGAA | 1 cut(s) | 330 |
| BaeGI | GKGCMC | 1 cut(s) | 861 |
| BalI | TGGCCA | 1 cut(s) | 740 |
| BanI | GGYRCC | 2 cut(s) | 147, 751 |
| BanII | GRGCYC | 1 cut(s) | 876 |
| BauI | CACGAG | 1 cut(s) | 875 |
| BbsI | GAAGAC | 2 cut(s) | 309, 512 |
| Bbv12I | GWGCWC | 1 cut(s) | 876 |
| BbvI | GCAGC | 2 cut(s) | 109, 227 |
| BccI | CCATC | 4 cut(s) | 172, 251, 378, 532 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 108, 142, 377, 411 |
| BciT130I | CCWGG | 1 cut(s) | 56 |
| BciVI | GTATCC | 2 cut(s) | 615, 855 |
| BclI | TGATCA | 1 cut(s) | 480 |
| BcnI | CCSGG | 1 cut(s) | 145 |
| BcoDI | GTCTC | 1 cut(s) | 532 |
| BfaI | CTAG | 3 cut(s) | 309, 374, 961 |
| BfmI | CTRYAG | 1 cut(s) | 654 |
| BfuI | GTATCC | 2 cut(s) | 615, 855 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 224 |
| BisI | GCNGC | 2 cut(s) | 98, 216 |
| BlsI | GCNGC | 2 cut(s) | 99, 217 |
| Bme1390I | CCNGG | 2 cut(s) | 56, 145 |
| BmgBI | CACGTC | 1 cut(s) | 172 |
| BmiI | GGNNCC | 2 cut(s) | 149, 753 |
| BmrFI | CCNGG | 2 cut(s) | 56, 145 |
| BmsI | GCATC | 1 cut(s) | 478 |
| BpiI | GAAGAC | 2 cut(s) | 309, 512 |
| Bpu14I | TTCGAA | 1 cut(s) | 330 |
| BpuEI | CTTGAG | 2 cut(s) | 177, 263 |
| BpuMI | CCSGG | 1 cut(s) | 145 |
| BsaHI | GRCGYC | 1 cut(s) | 782 |
| BsaWI | WCCGGW | 1 cut(s) | 847 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 68, 98 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 854 |
| BseBI | CCWGG | 1 cut(s) | 56 |
| BseGI | GGATG | 3 cut(s) | 67, 246, 274 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 854 |
| BseMII | CTCAG | 1 cut(s) | 803 |
| BseSI | GKGCMC | 1 cut(s) | 861 |
| BseXI | GCAGC | 2 cut(s) | 109, 227 |
| BseYI | CCCAGC | 1 cut(s) | 133 |
| BsgI | GTGCAG | 2 cut(s) | 116, 142 |
| Bsh1236I | CGCG | 1 cut(s) | 591 |
| BshFI | GGCC | 1 cut(s) | 740 |
| BshNI | GGYRCC | 2 cut(s) | 147, 751 |
| BsiHKAI | GWGCWC | 1 cut(s) | 876 |
| BsiSI | CCGG | 2 cut(s) | 145, 848 |
| BslFI | GGGAC | 1 cut(s) | 578 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 854 |
| BsmAI | GTCTC | 1 cut(s) | 532 |
| BsmBI | CGTCTC | 1 cut(s) | 532 |
| BsmFI | GGGAC | 1 cut(s) | 578 |
| BsnI | GGCC | 1 cut(s) | 740 |
| Bsp119I | TTCGAA | 1 cut(s) | 330 |
| Bsp1286I | GDGCHC | 2 cut(s) | 861, 876 |
| Bsp143I | GATC | 3 cut(s) | 480, 945, 957 |
| BspACI | CCGC | 2 cut(s) | 82, 893 |
| BspANI | GGCC | 1 cut(s) | 740 |
| BspCNI | CTCAG | 1 cut(s) | 804 |
| BspFNI | CGCG | 1 cut(s) | 591 |
| BspLI | GGNNCC | 2 cut(s) | 149, 753 |
| BspT104I | TTCGAA | 1 cut(s) | 330 |
| BspT107I | GGYRCC | 2 cut(s) | 147, 751 |
| BsrBI | CCGCTC | 1 cut(s) | 84 |
| BssMI | GATC | 3 cut(s) | 480, 945, 957 |
| BssNI | GRCGYC | 1 cut(s) | 782 |
| BssSI | CACGAG | 1 cut(s) | 875 |
| Bst2BI | CACGAG | 1 cut(s) | 875 |
| Bst2UI | CCWGG | 1 cut(s) | 56 |
| Bst4CI | ACNGT | 1 cut(s) | 470 |
| BstACI | GRCGYC | 1 cut(s) | 782 |
| BstBI | TTCGAA | 1 cut(s) | 330 |
| BstC8I | GCNNGC | 1 cut(s) | 189 |
| BstDEI | CTNAG | 2 cut(s) | 764, 812 |
| BstEII | GGTNACC | 1 cut(s) | 667 |
| BstF5I | GGATG | 3 cut(s) | 67, 246, 274 |
| BstFNI | CGCG | 1 cut(s) | 591 |
| BstKTI | GATC | 3 cut(s) | 483, 948, 960 |
| BstMAI | GTCTC | 1 cut(s) | 532 |
| BstMBI | GATC | 3 cut(s) | 480, 945, 957 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 81, 203, 212, 224, 233, 790, 901, 922 |
| BstNI | CCWGG | 1 cut(s) | 56 |
| BstPI | GGTNACC | 1 cut(s) | 667 |
| BstSCI | CCNGG | 2 cut(s) | 54, 143 |
| BstSFI | CTRYAG | 1 cut(s) | 654 |
| BstSLI | GKGCMC | 1 cut(s) | 861 |
| BstUI | CGCG | 1 cut(s) | 591 |
| BstV1I | GCAGC | 2 cut(s) | 109, 227 |
| BstV2I | GAAGAC | 2 cut(s) | 309, 512 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 55, 748 |
| BsuI | GTATCC | 2 cut(s) | 615, 855 |
| BsuRI | GGCC | 1 cut(s) | 740 |
| BtgZI | GCGATG | 1 cut(s) | 506 |
| BtrI | CACGTC | 1 cut(s) | 172 |
| BtsCI | GGATG | 3 cut(s) | 67, 246, 274 |
| BtsI | GCAGTG | 1 cut(s) | 154 |
| BtsIMutI | CAGTG | 1 cut(s) | 154 |
| Cac8I | GCNNGC | 1 cut(s) | 189 |
| CseI | GACGC | 2 cut(s) | 580, 790 |
| Csp6I | GTAC | 2 cut(s) | 148, 283 |
| CviAII | CATG | 4 cut(s) | 265, 353, 742, 778 |
| CviQI | GTAC | 2 cut(s) | 148, 283 |
| DdeI | CTNAG | 2 cut(s) | 764, 812 |
| DpnI | GATC | 3 cut(s) | 482, 947, 959 |
| DpnII | GATC | 3 cut(s) | 480, 945, 957 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 638 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 638 |
| EaeI | YGGCCR | 1 cut(s) | 738 |
| Ecl136II | GAGCTC | 1 cut(s) | 874 |
| Eco24I | GRGCYC | 1 cut(s) | 876 |
| Eco53kI | GAGCTC | 1 cut(s) | 874 |
| Eco91I | GGTNACC | 1 cut(s) | 667 |
| EcoICRI | GAGCTC | 1 cut(s) | 874 |
| EcoO65I | GGTNACC | 1 cut(s) | 667 |
| EcoRII | CCWGG | 1 cut(s) | 54 |
| EcoT38I | GRGCYC | 1 cut(s) | 876 |
| Esp3I | CGTCTC | 1 cut(s) | 532 |
| FaeI | CATG | 4 cut(s) | 268, 356, 745, 781 |
| FaqI | GGGAC | 1 cut(s) | 578 |
| FatI | CATG | 4 cut(s) | 264, 352, 741, 777 |
| FbaI | TGATCA | 1 cut(s) | 480 |
| Fnu4HI | GCNGC | 2 cut(s) | 98, 216 |
| FokI | GGATG | 3 cut(s) | 54, 233, 281 |
| FriOI | GRGCYC | 1 cut(s) | 876 |
| Fsp4HI | GCNGC | 2 cut(s) | 98, 216 |
| FspBI | CTAG | 3 cut(s) | 309, 374, 961 |
| GluI | GCNGC | 2 cut(s) | 98, 216 |
| GsaI | CCCAGC | 1 cut(s) | 137 |
| HaeIII | GGCC | 1 cut(s) | 740 |
| HapII | CCGG | 2 cut(s) | 145, 848 |
| HgaI | GACGC | 2 cut(s) | 580, 790 |
| Hin1I | GRCGYC | 1 cut(s) | 782 |
| Hin1II | CATG | 4 cut(s) | 268, 356, 745, 781 |
| HindIII | AAGCTT | 1 cut(s) | 195 |
| HinfI | GANTC | 6 cut(s) | 256, 272, 356, 508, 579, 808 |
| HpaII | CCGG | 2 cut(s) | 145, 848 |
| HphI | GGTGA | 1 cut(s) | 882 |
| Hpy188I | TCNGA | 3 cut(s) | 169, 436, 813 |
| Hpy188III | TCNNGA | 6 cut(s) | 368, 422, 629, 833, 877, 949 |
| HpyAV | CCTTC | 5 cut(s) | 306, 404, 529, 658, 795 |
| HpyCH4III | ACNGT | 1 cut(s) | 470 |
| HpyCH4IV | ACGT | 4 cut(s) | 64, 171, 633, 708 |
| HpyCH4V | TGCA | 4 cut(s) | 97, 159, 533, 572 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 81, 203, 212, 224, 233, 790, 901, 922 |
| HpyF3I | CTNAG | 2 cut(s) | 764, 812 |
| HpySE526I | ACGT | 4 cut(s) | 64, 171, 633, 708 |
| Hsp92I | GRCGYC | 1 cut(s) | 782 |
| Hsp92II | CATG | 4 cut(s) | 268, 356, 745, 781 |
| KpnI | GGTACC | 1 cut(s) | 151 |
| Ksp22I | TGATCA | 1 cut(s) | 480 |
| Kzo9I | GATC | 3 cut(s) | 480, 945, 957 |
| LmnI | GCTCC | 1 cut(s) | 89 |
| Lsp1109I | GCAGC | 2 cut(s) | 109, 227 |
| LweI | GCATC | 1 cut(s) | 478 |
| MaeI | CTAG | 3 cut(s) | 309, 374, 961 |
| MaeII | ACGT | 4 cut(s) | 64, 171, 633, 708 |
| MaeIII | GTNAC | 3 cut(s) | 260, 667, 888 |
| MalI | GATC | 3 cut(s) | 482, 947, 959 |
| MbiI | CCGCTC | 1 cut(s) | 84 |
| MboI | GATC | 3 cut(s) | 480, 945, 957 |
| MboII | GAAGA | 6 cut(s) | 311, 314, 344, 517, 892, 955 |
| MhlI | GDGCHC | 2 cut(s) | 861, 876 |
| MlsI | TGGCCA | 1 cut(s) | 740 |
| MluCI | AATT | 4 cut(s) | 38, 558, 612, 884 |
| MluNI | TGGCCA | 1 cut(s) | 740 |
| MlyI | GAGTC | 4 cut(s) | 250, 350, 502, 817 |
| MnlI | CCTC | 6 cut(s) | 122, 161, 714, 718, 744, 806 |
| Mox20I | TGGCCA | 1 cut(s) | 740 |
| MroXI | GAANNNNTTC | 1 cut(s) | 441 |
| MscI | TGGCCA | 1 cut(s) | 740 |
| MseI | TTAA | 5 cut(s) | 41, 222, 411, 450, 458 |
| MslI | CAYNNNNRTG | 3 cut(s) | 251, 267, 746 |
| Msp20I | TGGCCA | 1 cut(s) | 740 |
| MspI | CCGG | 2 cut(s) | 145, 848 |
| MspR9I | CCNGG | 2 cut(s) | 56, 145 |
| MvaI | CCWGG | 1 cut(s) | 56 |
| MvnI | CGCG | 1 cut(s) | 591 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 81, 203, 212, 224, 233, 790, 901, 922 |
| NciI | CCSGG | 1 cut(s) | 145 |
| NdeII | GATC | 3 cut(s) | 480, 945, 957 |
| NlaIII | CATG | 4 cut(s) | 268, 356, 745, 781 |
| NlaIV | GGNNCC | 2 cut(s) | 149, 753 |
| NmuCI | GTSAC | 2 cut(s) | 260, 888 |
| NspV | TTCGAA | 1 cut(s) | 330 |
| PdmI | GAANNNNTTC | 1 cut(s) | 441 |
| PfeI | GAWTC | 2 cut(s) | 272, 579 |
| PkrI | GCNGC | 2 cut(s) | 99, 217 |
| PleI | GAGTC | 4 cut(s) | 250, 350, 502, 816 |
| PpsI | GAGTC | 4 cut(s) | 250, 350, 502, 816 |
| Psp124BI | GAGCTC | 1 cut(s) | 876 |
| Psp6I | CCWGG | 1 cut(s) | 54 |
| PspEI | GGTNACC | 1 cut(s) | 667 |
| PspFI | CCCAGC | 1 cut(s) | 133 |
| PspGI | CCWGG | 1 cut(s) | 54 |
| PspN4I | GGNNCC | 2 cut(s) | 149, 753 |
| RsaI | GTAC | 2 cut(s) | 149, 284 |
| RsaNI | GTAC | 2 cut(s) | 148, 283 |
| RseI | CAYNNNNRTG | 3 cut(s) | 251, 267, 746 |
| SacI | GAGCTC | 1 cut(s) | 876 |
| SaqAI | TTAA | 5 cut(s) | 41, 222, 411, 450, 458 |
| SatI | GCNGC | 2 cut(s) | 98, 216 |
| Sau3AI | GATC | 3 cut(s) | 480, 945, 957 |
| SchI | GAGTC | 4 cut(s) | 250, 350, 502, 817 |
| ScrFI | CCNGG | 2 cut(s) | 56, 145 |
| SduI | GDGCHC | 2 cut(s) | 861, 876 |
| SfaNI | GCATC | 1 cut(s) | 478 |
| SfcI | CTRYAG | 1 cut(s) | 654 |
| SfuI | TTCGAA | 1 cut(s) | 330 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 251, 267, 746 |
| SmlI | CTYRAG | 2 cut(s) | 192, 278 |
| SmoI | CTYRAG | 2 cut(s) | 192, 278 |
| Sse9I | AATT | 4 cut(s) | 38, 558, 612, 884 |
| SsiI | CCGC | 2 cut(s) | 82, 893 |
| SspMI | CTAG | 3 cut(s) | 309, 374, 961 |
| SstI | GAGCTC | 1 cut(s) | 876 |
| StyD4I | CCNGG | 2 cut(s) | 54, 143 |
| TaaI | ACNGT | 1 cut(s) | 470 |
| TaiI | ACGT | 4 cut(s) | 67, 174, 636, 711 |
| TaqI | TCGA | 3 cut(s) | 330, 556, 834 |
| TasI | AATT | 4 cut(s) | 38, 558, 612, 884 |
| TfiI | GAWTC | 2 cut(s) | 272, 579 |
| Tru1I | TTAA | 5 cut(s) | 41, 222, 411, 450, 458 |
| Tru9I | TTAA | 5 cut(s) | 41, 222, 411, 450, 458 |
| TscAI | CASTG | 1 cut(s) | 161 |
| TseFI | GTSAC | 2 cut(s) | 260, 888 |
| TseI | GCWGC | 2 cut(s) | 97, 215 |
| Tsp45I | GTSAC | 2 cut(s) | 260, 888 |
| TspDTI | ATGAA | 2 cut(s) | 308, 312 |
| TspGWI | ACGGA | 1 cut(s) | 514 |
| TspRI | CASTG | 1 cut(s) | 161 |
| XmnI | GAANNNNTTC | 1 cut(s) | 441 |
| XspI | CTAG | 3 cut(s) | 309, 374, 961 |