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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 70, 76 |
| Acc36I | ACCTGC | 3 cut(s) | 70, 76, 117 |
| AccB1I | GGYRCC | 1 cut(s) | 79 |
| AccII | CGCG | 1 cut(s) | 569 |
| AciI | CCGC | 4 cut(s) | 23, 97, 567, 612 |
| AfaI | GTAC | 2 cut(s) | 320, 499 |
| AgsI | TTSAA | 1 cut(s) | 627 |
| AjiI | CACGTC | 1 cut(s) | 259 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 539, 571 |
| AluBI | AGCT | 4 cut(s) | 105, 281, 330, 412 |
| AluI | AGCT | 4 cut(s) | 105, 281, 330, 412 |
| Alw21I | GWGCWC | 1 cut(s) | 52 |
| Alw26I | GTCTC | 2 cut(s) | 36, 543 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 333 |
| Ama87I | CYCGRG | 1 cut(s) | 370 |
| AoxI | GGCC | 2 cut(s) | 54, 344 |
| ApeKI | GCWGC | 5 cut(s) | 19, 87, 120, 278, 430 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 656 |
| AspLEI | GCGC | 2 cut(s) | 125, 158 |
| AsuC2I | CCSGG | 2 cut(s) | 14, 323 |
| AsuHPI | GGTGA | 2 cut(s) | 51, 142 |
| AvaI | CYCGRG | 1 cut(s) | 370 |
| BaeGI | GKGCMC | 1 cut(s) | 137 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 302, 335 |
| BanI | GGYRCC | 1 cut(s) | 79 |
| BanII | GRGCYC | 1 cut(s) | 239 |
| BbsI | GAAGAC | 1 cut(s) | 524 |
| Bbv12I | GWGCWC | 1 cut(s) | 52 |
| BbvI | GCAGC | 5 cut(s) | 6, 74, 132, 290, 442 |
| BccI | CCATC | 4 cut(s) | 184, 343, 466, 593 |
| BceAI | ACGGC | 1 cut(s) | 115 |
| BcnI | CCSGG | 2 cut(s) | 14, 323 |
| BcoDI | GTCTC | 2 cut(s) | 36, 543 |
| BfaI | CTAG | 4 cut(s) | 127, 358, 377, 589 |
| BfmI | CTRYAG | 1 cut(s) | 118 |
| BfoI | RGCGCY | 1 cut(s) | 126 |
| BfuAI | ACCTGC | 3 cut(s) | 70, 76, 117 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 77 |
| BisI | GCNGC | 6 cut(s) | 20, 23, 88, 121, 279, 431 |
| BlsI | GCNGC | 6 cut(s) | 21, 24, 89, 122, 280, 432 |
| Bme1390I | CCNGG | 2 cut(s) | 14, 323 |
| BmeT110I | CYCGRG | 1 cut(s) | 370 |
| BmgBI | CACGTC | 1 cut(s) | 259 |
| BmiI | GGNNCC | 2 cut(s) | 81, 236 |
| BmrFI | CCNGG | 2 cut(s) | 14, 323 |
| BmsI | GCATC | 3 cut(s) | 207, 345, 693 |
| BpiI | GAAGAC | 1 cut(s) | 524 |
| BpmI | CTGGAG | 1 cut(s) | 18 |
| BpuEI | CTTGAG | 2 cut(s) | 325, 392 |
| BpuMI | CCSGG | 2 cut(s) | 14, 323 |
| BsaI | GGTCTC | 1 cut(s) | 543 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 156, 186 |
| Bse118I | RCCGGY | 1 cut(s) | 152 |
| Bse1I | ACTGG | 3 cut(s) | 28, 57, 495 |
| Bse3DI | GCAATG | 1 cut(s) | 713 |
| BseGI | GGATG | 3 cut(s) | 461, 489, 563 |
| BseMI | GCAATG | 1 cut(s) | 713 |
| BseMII | CTCAG | 1 cut(s) | 154 |
| BseNI | ACTGG | 3 cut(s) | 28, 57, 495 |
| BseRI | GAGGAG | 1 cut(s) | 247 |
| BseSI | GKGCMC | 1 cut(s) | 137 |
| BseXI | GCAGC | 5 cut(s) | 6, 74, 132, 290, 442 |
| BsgI | GTGCAG | 1 cut(s) | 48 |
| Bsh1236I | CGCG | 1 cut(s) | 569 |
| BshFI | GGCC | 2 cut(s) | 56, 346 |
| BshNI | GGYRCC | 1 cut(s) | 79 |
| BsiHKAI | GWGCWC | 1 cut(s) | 52 |
| BsiHKCI | CYCGRG | 1 cut(s) | 370 |
| BsiSI | CCGG | 3 cut(s) | 14, 153, 323 |
| BsmAI | GTCTC | 2 cut(s) | 36, 543 |
| BsnI | GGCC | 2 cut(s) | 56, 346 |
| Bso31I | GGTCTC | 1 cut(s) | 543 |
| BsoBI | CYCGRG | 1 cut(s) | 370 |
| Bsp1286I | GDGCHC | 3 cut(s) | 52, 137, 239 |
| Bsp143I | GATC | 1 cut(s) | 695 |
| BspACI | CCGC | 4 cut(s) | 23, 97, 567, 612 |
| BspANI | GGCC | 2 cut(s) | 56, 346 |
| BspCNI | CTCAG | 1 cut(s) | 153 |
| BspFNI | CGCG | 1 cut(s) | 569 |
| BspHI | TCATGA | 1 cut(s) | 636 |
| BspLI | GGNNCC | 2 cut(s) | 81, 236 |
| BspMAI | CTGCAG | 1 cut(s) | 122 |
| BspMI | ACCTGC | 3 cut(s) | 70, 76, 117 |
| BspT107I | GGYRCC | 1 cut(s) | 79 |
| BspTNI | GGTCTC | 1 cut(s) | 543 |
| BsrDI | GCAATG | 1 cut(s) | 713 |
| BsrFI | RCCGGY | 1 cut(s) | 152 |
| BsrI | ACTGG | 3 cut(s) | 28, 57, 495 |
| BssAI | RCCGGY | 1 cut(s) | 152 |
| BssMI | GATC | 1 cut(s) | 695 |
| Bst4CI | ACNGT | 1 cut(s) | 297 |
| BstC8I | GCNNGC | 1 cut(s) | 253 |
| BstDEI | CTNAG | 3 cut(s) | 140, 247, 435 |
| BstF5I | GGATG | 3 cut(s) | 461, 489, 563 |
| BstFNI | CGCG | 1 cut(s) | 569 |
| BstH2I | RGCGCY | 1 cut(s) | 126 |
| BstHHI | GCGC | 2 cut(s) | 125, 158 |
| BstKTI | GATC | 1 cut(s) | 698 |
| BstMAI | GTCTC | 2 cut(s) | 36, 543 |
| BstMBI | GATC | 1 cut(s) | 695 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 62, 77, 96, 141, 275, 287, 418, 427, 566 |
| BstSCI | CCNGG | 2 cut(s) | 12, 321 |
| BstSFI | CTRYAG | 1 cut(s) | 118 |
| BstSLI | GKGCMC | 1 cut(s) | 137 |
| BstUI | CGCG | 1 cut(s) | 569 |
| BstV1I | GCAGC | 5 cut(s) | 6, 74, 132, 290, 442 |
| BstV2I | GAAGAC | 1 cut(s) | 524 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 52 |
| BsuRI | GGCC | 2 cut(s) | 56, 346 |
| BtrI | CACGTC | 1 cut(s) | 259 |
| BtsCI | GGATG | 3 cut(s) | 461, 489, 563 |
| BtsI | GCAGTG | 1 cut(s) | 264 |
| BtsIMutI | CAGTG | 2 cut(s) | 50, 264 |
| BveI | ACCTGC | 3 cut(s) | 70, 76, 117 |
| Cac8I | GCNNGC | 1 cut(s) | 253 |
| CaiI | CAGNNNCTG | 1 cut(s) | 333 |
| CciI | TCATGA | 1 cut(s) | 636 |
| CfoI | GCGC | 2 cut(s) | 125, 158 |
| Cfr10I | RCCGGY | 1 cut(s) | 152 |
| Csp6I | GTAC | 2 cut(s) | 319, 498 |
| CviAII | CATG | 1 cut(s) | 637 |
| CviQI | GTAC | 2 cut(s) | 319, 498 |
| DdeI | CTNAG | 3 cut(s) | 140, 247, 435 |
| DpnI | GATC | 1 cut(s) | 697 |
| DpnII | GATC | 1 cut(s) | 695 |
| EciI | GGCGGA | 1 cut(s) | 86 |
| Eco24I | GRGCYC | 1 cut(s) | 239 |
| Eco31I | GGTCTC | 1 cut(s) | 543 |
| Eco88I | CYCGRG | 1 cut(s) | 370 |
| EcoT38I | GRGCYC | 1 cut(s) | 239 |
| FaeI | CATG | 1 cut(s) | 640 |
| FaiI | YATR | 8 cut(s) | 304, 479, 481, 508, 605, 638, 644, 684 |
| FatI | CATG | 1 cut(s) | 636 |
| FauNDI | CATATG | 1 cut(s) | 479 |
| Fnu4HI | GCNGC | 6 cut(s) | 20, 23, 88, 121, 279, 431 |
| FokI | GGATG | 3 cut(s) | 448, 496, 550 |
| FriOI | GRGCYC | 1 cut(s) | 239 |
| Fsp4HI | GCNGC | 6 cut(s) | 20, 23, 88, 121, 279, 431 |
| FspBI | CTAG | 4 cut(s) | 127, 358, 377, 589 |
| GlaI | GCGC | 2 cut(s) | 124, 157 |
| GluI | GCNGC | 6 cut(s) | 20, 23, 88, 121, 279, 431 |
| GsuI | CTGGAG | 1 cut(s) | 18 |
| HaeII | RGCGCY | 1 cut(s) | 126 |
| HaeIII | GGCC | 2 cut(s) | 56, 346 |
| HapII | CCGG | 3 cut(s) | 14, 153, 323 |
| HhaI | GCGC | 2 cut(s) | 125, 158 |
| Hin1II | CATG | 1 cut(s) | 640 |
| Hin6I | GCGC | 2 cut(s) | 123, 156 |
| HinP1I | GCGC | 2 cut(s) | 123, 156 |
| HindIII | AAGCTT | 1 cut(s) | 410 |
| HinfI | GANTC | 5 cut(s) | 353, 366, 471, 487, 571 |
| HpaII | CCGG | 3 cut(s) | 14, 153, 323 |
| HphI | GGTGA | 2 cut(s) | 51, 142 |
| Hpy188I | TCNGA | 1 cut(s) | 651 |
| Hpy188III | TCNNGA | 3 cut(s) | 370, 583, 637 |
| HpyAV | CCTTC | 1 cut(s) | 521 |
| HpyCH4III | ACNGT | 1 cut(s) | 297 |
| HpyCH4IV | ACGT | 2 cut(s) | 258, 284 |
| HpyCH4V | TGCA | 8 cut(s) | 6, 65, 112, 120, 182, 227, 336, 706 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 62, 77, 96, 141, 275, 287, 418, 427, 566 |
| HpyF3I | CTNAG | 3 cut(s) | 140, 247, 435 |
| HpySE526I | ACGT | 2 cut(s) | 258, 284 |
| Hsp92II | CATG | 1 cut(s) | 640 |
| HspAI | GCGC | 2 cut(s) | 123, 156 |
| Kzo9I | GATC | 1 cut(s) | 695 |
| LmnI | GCTCC | 2 cut(s) | 234, 335 |
| Lsp1109I | GCAGC | 5 cut(s) | 6, 74, 132, 290, 442 |
| LweI | GCATC | 3 cut(s) | 207, 345, 693 |
| MaeI | CTAG | 4 cut(s) | 127, 358, 377, 589 |
| MaeII | ACGT | 2 cut(s) | 258, 284 |
| MalI | GATC | 1 cut(s) | 697 |
| MboI | GATC | 1 cut(s) | 695 |
| MboII | GAAGA | 4 cut(s) | 202, 526, 529, 559 |
| MhlI | GDGCHC | 3 cut(s) | 52, 137, 239 |
| MluCI | AATT | 1 cut(s) | 679 |
| MlyI | GAGTC | 2 cut(s) | 465, 565 |
| MnlI | CCTC | 7 cut(s) | 67, 82, 104, 171, 225, 432, 619 |
| MroXI | GAANNNNTTC | 1 cut(s) | 656 |
| MseI | TTAA | 2 cut(s) | 665, 673 |
| MslI | CAYNNNNRTG | 2 cut(s) | 466, 482 |
| MspI | CCGG | 3 cut(s) | 14, 153, 323 |
| MspR9I | CCNGG | 2 cut(s) | 14, 323 |
| MvnI | CGCG | 1 cut(s) | 569 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 62, 77, 96, 141, 275, 287, 418, 427, 566 |
| NciI | CCSGG | 2 cut(s) | 14, 323 |
| NdeI | CATATG | 1 cut(s) | 479 |
| NdeII | GATC | 1 cut(s) | 695 |
| NlaIII | CATG | 1 cut(s) | 640 |
| NlaIV | GGNNCC | 2 cut(s) | 81, 236 |
| PaeR7I | CTCGAG | 1 cut(s) | 370 |
| PagI | TCATGA | 1 cut(s) | 636 |
| PaqCI | CACCTGC | 2 cut(s) | 70, 76 |
| PdmI | GAANNNNTTC | 1 cut(s) | 656 |
| PfeI | GAWTC | 3 cut(s) | 353, 366, 487 |
| PkrI | GCNGC | 6 cut(s) | 21, 24, 89, 122, 280, 432 |
| PleI | GAGTC | 2 cut(s) | 465, 565 |
| PpsI | GAGTC | 2 cut(s) | 465, 565 |
| PspN4I | GGNNCC | 2 cut(s) | 81, 236 |
| PstI | CTGCAG | 1 cut(s) | 122 |
| PstNI | CAGNNNCTG | 1 cut(s) | 333 |
| RsaI | GTAC | 2 cut(s) | 320, 499 |
| RsaNI | GTAC | 2 cut(s) | 319, 498 |
| RseI | CAYNNNNRTG | 2 cut(s) | 466, 482 |
| SaqAI | TTAA | 2 cut(s) | 665, 673 |
| SatI | GCNGC | 6 cut(s) | 20, 23, 88, 121, 279, 431 |
| Sau3AI | GATC | 1 cut(s) | 695 |
| SchI | GAGTC | 2 cut(s) | 465, 565 |
| ScrFI | CCNGG | 2 cut(s) | 14, 323 |
| SduI | GDGCHC | 3 cut(s) | 52, 137, 239 |
| SfaNI | GCATC | 3 cut(s) | 207, 345, 693 |
| SfcI | CTRYAG | 1 cut(s) | 118 |
| Sfr274I | CTCGAG | 1 cut(s) | 370 |
| SgrAI | CRCCGGYG | 1 cut(s) | 152 |
| SlaI | CTCGAG | 1 cut(s) | 370 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 466, 482 |
| SmlI | CTYRAG | 3 cut(s) | 340, 370, 407 |
| SmoI | CTYRAG | 3 cut(s) | 340, 370, 407 |
| Sse9I | AATT | 1 cut(s) | 679 |
| SsiI | CCGC | 4 cut(s) | 23, 97, 567, 612 |
| SspMI | CTAG | 4 cut(s) | 127, 358, 377, 589 |
| StyD4I | CCNGG | 2 cut(s) | 12, 321 |
| TaaI | ACNGT | 1 cut(s) | 297 |
| TaiI | ACGT | 2 cut(s) | 261, 287 |
| TaqI | TCGA | 2 cut(s) | 371, 545 |
| TasI | AATT | 1 cut(s) | 679 |
| TauI | GCSGC | 1 cut(s) | 25 |
| TfiI | GAWTC | 3 cut(s) | 353, 366, 487 |
| Tru1I | TTAA | 2 cut(s) | 665, 673 |
| Tru9I | TTAA | 2 cut(s) | 665, 673 |
| TscAI | CASTG | 2 cut(s) | 57, 271 |
| TseI | GCWGC | 5 cut(s) | 19, 87, 120, 278, 430 |
| TspDTI | ATGAA | 3 cut(s) | 523, 527, 625 |
| TspRI | CASTG | 2 cut(s) | 57, 271 |
| XhoI | CTCGAG | 1 cut(s) | 370 |
| XmnI | GAANNNNTTC | 1 cut(s) | 656 |
| XspI | CTAG | 4 cut(s) | 127, 358, 377, 589 |