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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 447 |
| AccB1I | GGYRCC | 1 cut(s) | 6 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 728, 820 |
| AciI | CCGC | 3 cut(s) | 4, 544, 557 |
| AcvI | CACGTG | 5 cut(s) | 584, 602, 617, 635, 781 |
| AcyI | GRCGYC | 1 cut(s) | 7 |
| AdeI | CACNNNGTG | 4 cut(s) | 587, 605, 620, 728 |
| AfaI | GTAC | 1 cut(s) | 508 |
| AfeI | AGCGCT | 1 cut(s) | 75 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 210, 461, 462, 636, 728, 752, 804, 820 |
| AflIII | ACRYGT | 5 cut(s) | 581, 599, 614, 632, 771 |
| AgsI | TTSAA | 1 cut(s) | 124 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 160 |
| AjiI | CACGTC | 2 cut(s) | 689, 772 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 4 cut(s) | 23, 244, 346, 368 |
| AluI | AGCT | 4 cut(s) | 23, 244, 346, 368 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| Ama87I | CYCGRG | 1 cut(s) | 57 |
| Aor51HI | AGCGCT | 1 cut(s) | 75 |
| AoxI | GGCC | 3 cut(s) | 410, 511, 664 |
| ApaI | GGGCCC | 1 cut(s) | 515 |
| ApeKI | GCWGC | 2 cut(s) | 472, 788 |
| AseI | ATTAAT | 1 cut(s) | 351 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspA2I | CCTAGG | 2 cut(s) | 710, 802 |
| AspLEI | GCGC | 3 cut(s) | 9, 76, 468 |
| AspS9I | GGNCC | 5 cut(s) | 61, 411, 511, 512, 664 |
| AsuHPI | GGTGA | 1 cut(s) | 185 |
| AvaI | CYCGRG | 1 cut(s) | 57 |
| AvaII | GGWCC | 1 cut(s) | 61 |
| AvrII | CCTAGG | 2 cut(s) | 710, 802 |
| BaeGI | GKGCMC | 1 cut(s) | 515 |
| BanI | GGYRCC | 1 cut(s) | 6 |
| BanII | GRGCYC | 1 cut(s) | 515 |
| BbrPI | CACGTG | 5 cut(s) | 584, 602, 617, 635, 781 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| BbvI | GCAGC | 2 cut(s) | 484, 800 |
| BceAI | ACGGC | 1 cut(s) | 651 |
| BciVI | GTATCC | 1 cut(s) | 641 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfaI | CTAG | 4 cut(s) | 32, 77, 711, 803 |
| BfoI | RGCGCY | 2 cut(s) | 10, 77 |
| BfuI | GTATCC | 1 cut(s) | 641 |
| BisI | GCNGC | 3 cut(s) | 5, 473, 789 |
| BlnI | CCTAGG | 2 cut(s) | 710, 802 |
| BlsI | GCNGC | 3 cut(s) | 6, 474, 790 |
| Bme18I | GGWCC | 1 cut(s) | 61 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 160 |
| BmeT110I | CYCGRG | 1 cut(s) | 57 |
| BmgBI | CACGTC | 2 cut(s) | 689, 772 |
| BmgT120I | GGNCC | 5 cut(s) | 61, 411, 511, 512, 664 |
| BmiI | GGNNCC | 4 cut(s) | 8, 62, 421, 513 |
| BmsI | GCATC | 2 cut(s) | 43, 687 |
| BoxI | GACNNNNGTC | 1 cut(s) | 774 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| BsaAI | YACGTR | 5 cut(s) | 584, 602, 617, 635, 781 |
| BsaHI | GRCGYC | 1 cut(s) | 7 |
| BsaJI | CCNNGG | 3 cut(s) | 667, 710, 802 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 727, 757, 819 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 210, 461, 462, 636, 728, 752, 804, 820 |
| BseDI | CCNNGG | 3 cut(s) | 667, 710, 802 |
| BseGI | GGATG | 1 cut(s) | 384 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 210, 461, 462, 636, 728, 752, 804, 820 |
| BseMII | CTCAG | 2 cut(s) | 40, 291 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseSI | GKGCMC | 1 cut(s) | 515 |
| BseXI | GCAGC | 2 cut(s) | 484, 800 |
| BsgI | GTGCAG | 2 cut(s) | 723, 815 |
| BshFI | GGCC | 3 cut(s) | 412, 513, 666 |
| BshNI | GGYRCC | 1 cut(s) | 6 |
| BsiHKCI | CYCGRG | 1 cut(s) | 57 |
| BsiWI | CGTACG | 1 cut(s) | 506 |
| BslFI | GGGAC | 2 cut(s) | 74, 507 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 210, 461, 462, 636, 728, 752, 804, 820 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 2 cut(s) | 74, 507 |
| BsnI | GGCC | 3 cut(s) | 412, 513, 666 |
| BsoBI | CYCGRG | 1 cut(s) | 57 |
| Bsp120I | GGGCCC | 1 cut(s) | 511 |
| Bsp1286I | GDGCHC | 1 cut(s) | 515 |
| BspACI | CCGC | 3 cut(s) | 4, 544, 557 |
| BspANI | GGCC | 3 cut(s) | 412, 513, 666 |
| BspCNI | CTCAG | 2 cut(s) | 39, 290 |
| BspLI | GGNNCC | 4 cut(s) | 8, 62, 421, 513 |
| BspQI | GCTCTTC | 2 cut(s) | 75, 234 |
| BspT107I | GGYRCC | 1 cut(s) | 6 |
| BssECI | CCNNGG | 3 cut(s) | 667, 710, 802 |
| BssNI | GRCGYC | 1 cut(s) | 7 |
| BssT1I | CCWWGG | 2 cut(s) | 710, 802 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 234 |
| BstACI | GRCGYC | 1 cut(s) | 7 |
| BstBAI | YACGTR | 5 cut(s) | 584, 602, 617, 635, 781 |
| BstC8I | GCNNGC | 1 cut(s) | 470 |
| BstDEI | CTNAG | 2 cut(s) | 26, 277 |
| BstDSI | CCRYGG | 1 cut(s) | 667 |
| BstF5I | GGATG | 1 cut(s) | 384 |
| BstH2I | RGCGCY | 2 cut(s) | 10, 77 |
| BstHHI | GCGC | 3 cut(s) | 9, 76, 468 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 82, 472 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 774 |
| BstSLI | GKGCMC | 1 cut(s) | 515 |
| BstV1I | GCAGC | 2 cut(s) | 484, 800 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| BsuI | GTATCC | 1 cut(s) | 641 |
| BsuRI | GGCC | 3 cut(s) | 412, 513, 666 |
| BtgI | CCRYGG | 1 cut(s) | 667 |
| BtrI | CACGTC | 2 cut(s) | 689, 772 |
| BtsCI | GGATG | 1 cut(s) | 384 |
| BtsIMutI | CAGTG | 1 cut(s) | 137 |
| Cac8I | GCNNGC | 1 cut(s) | 470 |
| CfoI | GCGC | 3 cut(s) | 9, 76, 468 |
| Cfr13I | GGNCC | 5 cut(s) | 61, 411, 511, 512, 664 |
| CseI | GACGC | 1 cut(s) | 418 |
| Csp6I | GTAC | 1 cut(s) | 507 |
| CviAII | CATG | 2 cut(s) | 205, 820 |
| CviQI | GTAC | 1 cut(s) | 507 |
| DdeI | CTNAG | 2 cut(s) | 26, 277 |
| DinI | GGCGCC | 1 cut(s) | 8 |
| DraI | TTTAAA | 1 cut(s) | 553 |
| DraIII | CACNNNGTG | 4 cut(s) | 587, 605, 620, 728 |
| DriI | GACNNNNNGTC | 1 cut(s) | 160 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 234 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 160 |
| EarI | CTCTTC | 2 cut(s) | 75, 234 |
| Eco130I | CCWWGG | 2 cut(s) | 710, 802 |
| Eco24I | GRGCYC | 1 cut(s) | 515 |
| Eco32I | GATATC | 1 cut(s) | 291 |
| Eco47I | GGWCC | 1 cut(s) | 61 |
| Eco47III | AGCGCT | 1 cut(s) | 75 |
| Eco72I | CACGTG | 5 cut(s) | 584, 602, 617, 635, 781 |
| Eco88I | CYCGRG | 1 cut(s) | 57 |
| EcoO109I | RGGNCCY | 1 cut(s) | 61 |
| EcoRV | GATATC | 1 cut(s) | 291 |
| EcoT14I | CCWWGG | 2 cut(s) | 710, 802 |
| EcoT38I | GRGCYC | 1 cut(s) | 515 |
| EgeI | GGCGCC | 1 cut(s) | 8 |
| EheI | GGCGCC | 1 cut(s) | 8 |
| ErhI | CCWWGG | 2 cut(s) | 710, 802 |
| FaeI | CATG | 2 cut(s) | 208, 823 |
| FaqI | GGGAC | 2 cut(s) | 74, 507 |
| FatI | CATG | 2 cut(s) | 204, 819 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 473, 789 |
| FokI | GGATG | 1 cut(s) | 371 |
| FriOI | GRGCYC | 1 cut(s) | 515 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 473, 789 |
| FspBI | CTAG | 4 cut(s) | 32, 77, 711, 803 |
| GlaI | GCGC | 3 cut(s) | 8, 75, 467 |
| GluI | GCNGC | 3 cut(s) | 5, 473, 789 |
| HaeII | RGCGCY | 2 cut(s) | 10, 77 |
| HaeIII | GGCC | 3 cut(s) | 412, 513, 666 |
| HgaI | GACGC | 1 cut(s) | 418 |
| HhaI | GCGC | 3 cut(s) | 9, 76, 468 |
| Hin1I | GRCGYC | 1 cut(s) | 7 |
| Hin1II | CATG | 2 cut(s) | 208, 823 |
| Hin6I | GCGC | 3 cut(s) | 7, 74, 466 |
| HinP1I | GCGC | 3 cut(s) | 7, 74, 466 |
| HinfI | GANTC | 1 cut(s) | 256 |
| HphI | GGTGA | 1 cut(s) | 185 |
| Hpy166II | GTNNAC | 1 cut(s) | 731 |
| Hpy188I | TCNGA | 4 cut(s) | 29, 50, 154, 184 |
| Hpy188III | TCNNGA | 1 cut(s) | 59 |
| Hpy8I | GTNNAC | 1 cut(s) | 731 |
| HpyAV | CCTTC | 2 cut(s) | 118, 200 |
| HpyCH4IV | ACGT | 8 cut(s) | 583, 601, 616, 634, 688, 727, 771, 780 |
| HpyCH4V | TGCA | 4 cut(s) | 221, 452, 740, 832 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 82, 472 |
| HpyF3I | CTNAG | 2 cut(s) | 26, 277 |
| HpySE526I | ACGT | 8 cut(s) | 583, 601, 616, 634, 688, 727, 771, 780 |
| Hsp92I | GRCGYC | 1 cut(s) | 7 |
| Hsp92II | CATG | 2 cut(s) | 208, 823 |
| HspAI | GCGC | 3 cut(s) | 7, 74, 466 |
| KasI | GGCGCC | 1 cut(s) | 6 |
| LguI | GCTCTTC | 2 cut(s) | 75, 234 |
| LpnPI | CCDG | 3 cut(s) | 129, 285, 306 |
| Lsp1109I | GCAGC | 2 cut(s) | 484, 800 |
| LweI | GCATC | 2 cut(s) | 43, 687 |
| MaeI | CTAG | 4 cut(s) | 32, 77, 711, 803 |
| MaeII | ACGT | 8 cut(s) | 583, 601, 616, 634, 688, 727, 771, 780 |
| MaeIII | GTNAC | 3 cut(s) | 590, 776, 793 |
| MboII | GAAGA | 4 cut(s) | 92, 248, 251, 265 |
| MfeI | CAATTG | 1 cut(s) | 282 |
| MhlI | GDGCHC | 1 cut(s) | 515 |
| MluCI | AATT | 5 cut(s) | 246, 282, 327, 397, 442 |
| Mly113I | GGCGCC | 1 cut(s) | 7 |
| MlyI | GAGTC | 1 cut(s) | 250 |
| MmeI | TCCRAC | 1 cut(s) | 177 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 4 cut(s) | 159, 339, 351, 552 |
| MunI | CAATTG | 1 cut(s) | 282 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 82, 472 |
| NarI | GGCGCC | 1 cut(s) | 7 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NlaIII | CATG | 2 cut(s) | 208, 823 |
| NlaIV | GGNNCC | 4 cut(s) | 8, 62, 421, 513 |
| NmuCI | GTSAC | 1 cut(s) | 776 |
| PciSI | GCTCTTC | 2 cut(s) | 75, 234 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 777 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| Pfl23II | CGTACG | 1 cut(s) | 506 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 728, 820 |
| PkrI | GCNGC | 3 cut(s) | 6, 474, 790 |
| PleI | GAGTC | 1 cut(s) | 250 |
| PluTI | GGCGCC | 1 cut(s) | 10 |
| PmaCI | CACGTG | 5 cut(s) | 584, 602, 617, 635, 781 |
| PmlI | CACGTG | 5 cut(s) | 584, 602, 617, 635, 781 |
| PpsI | GAGTC | 1 cut(s) | 250 |
| Ppu21I | YACGTR | 5 cut(s) | 584, 602, 617, 635, 781 |
| PpuMI | RGGWCCY | 1 cut(s) | 61 |
| PshAI | GACNNNNGTC | 1 cut(s) | 774 |
| PshBI | ATTAAT | 1 cut(s) | 351 |
| PsiI | TTATAA | 1 cut(s) | 447 |
| Psp5II | RGGWCCY | 1 cut(s) | 61 |
| PspCI | CACGTG | 5 cut(s) | 584, 602, 617, 635, 781 |
| PspLI | CGTACG | 1 cut(s) | 506 |
| PspN4I | GGNNCC | 4 cut(s) | 8, 62, 421, 513 |
| PspOMI | GGGCCC | 1 cut(s) | 511 |
| PspPI | GGNCC | 5 cut(s) | 61, 411, 511, 512, 664 |
| PspPPI | RGGWCCY | 1 cut(s) | 61 |
| RsaI | GTAC | 1 cut(s) | 508 |
| RsaNI | GTAC | 1 cut(s) | 507 |
| SapI | GCTCTTC | 2 cut(s) | 75, 234 |
| SaqAI | TTAA | 4 cut(s) | 159, 339, 351, 552 |
| SatI | GCNGC | 3 cut(s) | 5, 473, 789 |
| Sau96I | GGNCC | 5 cut(s) | 61, 411, 511, 512, 664 |
| SchI | GAGTC | 1 cut(s) | 250 |
| SduI | GDGCHC | 1 cut(s) | 515 |
| SfaNI | GCATC | 2 cut(s) | 43, 687 |
| SfoI | GGCGCC | 1 cut(s) | 8 |
| SinI | GGWCC | 1 cut(s) | 61 |
| Sse9I | AATT | 5 cut(s) | 246, 282, 327, 397, 442 |
| SsiI | CCGC | 3 cut(s) | 4, 544, 557 |
| SspDI | GGCGCC | 1 cut(s) | 6 |
| SspMI | CTAG | 4 cut(s) | 32, 77, 711, 803 |
| StyI | CCWWGG | 2 cut(s) | 710, 802 |
| TaiI | ACGT | 8 cut(s) | 586, 604, 619, 637, 691, 730, 774, 783 |
| TasI | AATT | 5 cut(s) | 246, 282, 327, 397, 442 |
| TauI | GCSGC | 1 cut(s) | 7 |
| Tru1I | TTAA | 4 cut(s) | 159, 339, 351, 552 |
| Tru9I | TTAA | 4 cut(s) | 159, 339, 351, 552 |
| TscAI | CASTG | 1 cut(s) | 137 |
| TseFI | GTSAC | 1 cut(s) | 776 |
| TseI | GCWGC | 2 cut(s) | 472, 788 |
| Tsp45I | GTSAC | 1 cut(s) | 776 |
| TspDTI | ATGAA | 1 cut(s) | 764 |
| TspGWI | ACGGA | 1 cut(s) | 422 |
| TspRI | CASTG | 1 cut(s) | 137 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 728, 820 |
| VpaK11BI | GGWCC | 1 cut(s) | 61 |
| VspI | ATTAAT | 1 cut(s) | 351 |
| XmaJI | CCTAGG | 2 cut(s) | 710, 802 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 4 cut(s) | 32, 77, 711, 803 |