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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 981 |
| AarI | CACCTGC | 1 cut(s) | 31 |
| Acc16I | TGCGCA | 2 cut(s) | 16, 114 |
| Acc36I | ACCTGC | 1 cut(s) | 31 |
| AccB1I | GGYRCC | 1 cut(s) | 702 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1262 |
| AciI | CCGC | 4 cut(s) | 417, 700, 1078, 1091 |
| AcsI | RAATTY | 1 cut(s) | 342 |
| AcuI | CTGAAG | 1 cut(s) | 493 |
| AcvI | CACGTG | 4 cut(s) | 1118, 1136, 1151, 1169 |
| AcyI | GRCGYC | 1 cut(s) | 703 |
| AdeI | CACNNNGTG | 3 cut(s) | 1121, 1154, 1262 |
| AfaI | GTAC | 1 cut(s) | 734 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 577, 644, 813, 995, 996, 1170, 1246, 1262, 1286 |
| AflIII | ACRYGT | 5 cut(s) | 735, 1115, 1133, 1148, 1166 |
| AgsI | TTSAA | 5 cut(s) | 311, 542, 609, 632, 942 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 763 |
| AjiI | CACGTC | 1 cut(s) | 1223 |
| AjnI | CCWGG | 1 cut(s) | 643 |
| Alw26I | GTCTC | 2 cut(s) | 750, 883 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 23, 121 |
| AoxI | GGCC | 4 cut(s) | 646, 944, 1045, 1198 |
| ApaI | GGGCCC | 1 cut(s) | 1049 |
| ApoI | RAATTY | 1 cut(s) | 342 |
| AspA2I | CCTAGG | 1 cut(s) | 1244 |
| AspLEI | GCGC | 4 cut(s) | 17, 115, 705, 1002 |
| AspS9I | GGNCC | 4 cut(s) | 945, 1045, 1046, 1198 |
| AsuHPI | GGTGA | 2 cut(s) | 197, 1298 |
| AvrII | CCTAGG | 1 cut(s) | 1244 |
| BaeGI | GKGCMC | 1 cut(s) | 1049 |
| BanI | GGYRCC | 1 cut(s) | 702 |
| BanII | GRGCYC | 2 cut(s) | 87, 1049 |
| BauI | CACGAG | 1 cut(s) | 1098 |
| BbrPI | CACGTG | 4 cut(s) | 1118, 1136, 1151, 1169 |
| BbsI | GAAGAC | 2 cut(s) | 47, 863 |
| BceAI | ACGGC | 1 cut(s) | 1185 |
| BciT130I | CCWGG | 1 cut(s) | 645 |
| BcoDI | GTCTC | 2 cut(s) | 750, 883 |
| BfaI | CTAG | 6 cut(s) | 93, 104, 528, 753, 1245, 1327 |
| BfoI | RGCGCY | 1 cut(s) | 706 |
| BfuAI | ACCTGC | 1 cut(s) | 31 |
| BglII | AGATCT | 1 cut(s) | 52 |
| BlnI | CCTAGG | 1 cut(s) | 1244 |
| Bme1390I | CCNGG | 1 cut(s) | 645 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 763 |
| BmgBI | CACGTC | 1 cut(s) | 1223 |
| BmgT120I | GGNCC | 4 cut(s) | 945, 1045, 1046, 1198 |
| BmiI | GGNNCC | 3 cut(s) | 704, 955, 1047 |
| BmrFI | CCNGG | 1 cut(s) | 645 |
| BmsI | GCATC | 2 cut(s) | 687, 739 |
| BpiI | GAAGAC | 2 cut(s) | 47, 863 |
| BsaAI | YACGTR | 4 cut(s) | 1118, 1136, 1151, 1169 |
| BsaHI | GRCGYC | 1 cut(s) | 703 |
| BsaI | GGTCTC | 1 cut(s) | 750 |
| BsaJI | CCNNGG | 2 cut(s) | 1201, 1244 |
| BsaWI | WCCGGW | 1 cut(s) | 182 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1261, 1291 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 577, 644, 813, 995, 996, 1170, 1246, 1262, 1286 |
| BseBI | CCWGG | 1 cut(s) | 645 |
| BseDI | CCNNGG | 2 cut(s) | 1201, 1244 |
| BseGI | GGATG | 2 cut(s) | 519, 918 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 577, 644, 813, 995, 996, 1170, 1246, 1262, 1286 |
| BseMII | CTCAG | 2 cut(s) | 736, 894 |
| BseRI | GAGGAG | 1 cut(s) | 857 |
| BseSI | GKGCMC | 1 cut(s) | 1049 |
| BsgI | GTGCAG | 1 cut(s) | 1257 |
| BshFI | GGCC | 4 cut(s) | 648, 946, 1047, 1200 |
| BshNI | GGYRCC | 1 cut(s) | 702 |
| BsiSI | CCGG | 6 cut(s) | 160, 172, 183, 241, 264, 323 |
| BslFI | GGGAC | 1 cut(s) | 1041 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 577, 644, 813, 995, 996, 1170, 1246, 1262, 1286 |
| BsmAI | GTCTC | 2 cut(s) | 750, 883 |
| BsmBI | CGTCTC | 1 cut(s) | 883 |
| BsmFI | GGGAC | 1 cut(s) | 1041 |
| BsnI | GGCC | 4 cut(s) | 648, 946, 1047, 1200 |
| Bso31I | GGTCTC | 1 cut(s) | 750 |
| Bsp120I | GGGCCC | 1 cut(s) | 1045 |
| Bsp1286I | GDGCHC | 2 cut(s) | 87, 1049 |
| Bsp143I | GATC | 1 cut(s) | 52 |
| BspACI | CCGC | 4 cut(s) | 417, 700, 1078, 1091 |
| BspANI | GGCC | 4 cut(s) | 648, 946, 1047, 1200 |
| BspCNI | CTCAG | 2 cut(s) | 735, 893 |
| BspHI | TCATGA | 1 cut(s) | 376 |
| BspLI | GGNNCC | 3 cut(s) | 704, 955, 1047 |
| BspMI | ACCTGC | 1 cut(s) | 31 |
| BspQI | GCTCTTC | 1 cut(s) | 798 |
| BspT107I | GGYRCC | 1 cut(s) | 702 |
| BspTNI | GGTCTC | 1 cut(s) | 750 |
| BssECI | CCNNGG | 2 cut(s) | 1201, 1244 |
| BssMI | GATC | 1 cut(s) | 52 |
| BssNI | GRCGYC | 1 cut(s) | 703 |
| BssSI | CACGAG | 1 cut(s) | 1098 |
| BssT1I | CCWWGG | 1 cut(s) | 1244 |
| Bst2BI | CACGAG | 1 cut(s) | 1098 |
| Bst2UI | CCWGG | 1 cut(s) | 645 |
| Bst6I | CTCTTC | 3 cut(s) | 798, 834, 1062 |
| BstACI | GRCGYC | 1 cut(s) | 703 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 23, 121 |
| BstBAI | YACGTR | 4 cut(s) | 1118, 1136, 1151, 1169 |
| BstC8I | GCNNGC | 2 cut(s) | 678, 1004 |
| BstDEI | CTNAG | 5 cut(s) | 360, 383, 407, 722, 880 |
| BstDSI | CCRYGG | 1 cut(s) | 1201 |
| BstEII | GGTNACC | 1 cut(s) | 580 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 642 |
| BstF5I | GGATG | 2 cut(s) | 519, 918 |
| BstH2I | RGCGCY | 1 cut(s) | 706 |
| BstHHI | GCGC | 4 cut(s) | 17, 115, 705, 1002 |
| BstKTI | GATC | 1 cut(s) | 55 |
| BstMAI | GTCTC | 2 cut(s) | 750, 883 |
| BstMBI | GATC | 1 cut(s) | 52 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 23, 121, 1006, 1320 |
| BstNI | CCWGG | 1 cut(s) | 645 |
| BstNSI | RCATGY | 2 cut(s) | 680, 739 |
| BstPI | GGTNACC | 1 cut(s) | 580 |
| BstSCI | CCNGG | 1 cut(s) | 643 |
| BstSLI | GKGCMC | 1 cut(s) | 1049 |
| BstV2I | GAAGAC | 2 cut(s) | 47, 863 |
| BstX2I | RGATCY | 1 cut(s) | 52 |
| BstYI | RGATCY | 1 cut(s) | 52 |
| BsuRI | GGCC | 4 cut(s) | 648, 946, 1047, 1200 |
| BtgI | CCRYGG | 1 cut(s) | 1201 |
| BtrI | CACGTC | 1 cut(s) | 1223 |
| BtsCI | GGATG | 2 cut(s) | 519, 918 |
| BveI | ACCTGC | 1 cut(s) | 31 |
| Cac8I | GCNNGC | 2 cut(s) | 678, 1004 |
| CaiI | CAGNNNCTG | 2 cut(s) | 23, 121 |
| CciI | TCATGA | 1 cut(s) | 376 |
| CfoI | GCGC | 4 cut(s) | 17, 115, 705, 1002 |
| Cfr13I | GGNCC | 4 cut(s) | 945, 1045, 1046, 1198 |
| CseI | GACGC | 2 cut(s) | 402, 952 |
| Csp6I | GTAC | 1 cut(s) | 733 |
| CviAII | CATG | 3 cut(s) | 377, 677, 736 |
| CviQI | GTAC | 1 cut(s) | 733 |
| DdeI | CTNAG | 5 cut(s) | 360, 383, 407, 722, 880 |
| DinI | GGCGCC | 1 cut(s) | 704 |
| DpnI | GATC | 1 cut(s) | 54 |
| DpnII | GATC | 1 cut(s) | 52 |
| DraI | TTTAAA | 2 cut(s) | 474, 1087 |
| DraIII | CACNNNGTG | 3 cut(s) | 1121, 1154, 1262 |
| DriI | GACNNNNNGTC | 1 cut(s) | 763 |
| Eam1104I | CTCTTC | 3 cut(s) | 798, 834, 1062 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 763 |
| EarI | CTCTTC | 3 cut(s) | 798, 834, 1062 |
| Eco130I | CCWWGG | 1 cut(s) | 1244 |
| Eco147I | AGGCCT | 1 cut(s) | 648 |
| Eco24I | GRGCYC | 2 cut(s) | 87, 1049 |
| Eco31I | GGTCTC | 1 cut(s) | 750 |
| Eco57I | CTGAAG | 1 cut(s) | 493 |
| Eco72I | CACGTG | 4 cut(s) | 1118, 1136, 1151, 1169 |
| Eco91I | GGTNACC | 1 cut(s) | 580 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 642 |
| EcoO65I | GGTNACC | 1 cut(s) | 580 |
| EcoRII | CCWGG | 1 cut(s) | 643 |
| EcoT14I | CCWWGG | 1 cut(s) | 1244 |
| EcoT38I | GRGCYC | 2 cut(s) | 87, 1049 |
| EgeI | GGCGCC | 1 cut(s) | 704 |
| EheI | GGCGCC | 1 cut(s) | 704 |
| ErhI | CCWWGG | 1 cut(s) | 1244 |
| Esp3I | CGTCTC | 1 cut(s) | 883 |
| FaeI | CATG | 3 cut(s) | 380, 680, 739 |
| FaqI | GGGAC | 1 cut(s) | 1041 |
| FatI | CATG | 3 cut(s) | 376, 676, 735 |
| FauNDI | CATATG | 1 cut(s) | 708 |
| FokI | GGATG | 2 cut(s) | 526, 905 |
| FriOI | GRGCYC | 2 cut(s) | 87, 1049 |
| FspBI | CTAG | 6 cut(s) | 93, 104, 528, 753, 1245, 1327 |
| FspI | TGCGCA | 2 cut(s) | 16, 114 |
| GlaI | GCGC | 4 cut(s) | 16, 114, 704, 1001 |
| HaeII | RGCGCY | 1 cut(s) | 706 |
| HaeIII | GGCC | 4 cut(s) | 648, 946, 1047, 1200 |
| HapII | CCGG | 6 cut(s) | 160, 172, 183, 241, 264, 323 |
| HgaI | GACGC | 2 cut(s) | 402, 952 |
| HhaI | GCGC | 4 cut(s) | 17, 115, 705, 1002 |
| Hin1I | GRCGYC | 1 cut(s) | 703 |
| Hin1II | CATG | 3 cut(s) | 380, 680, 739 |
| Hin6I | GCGC | 4 cut(s) | 15, 113, 703, 1000 |
| HinP1I | GCGC | 4 cut(s) | 15, 113, 703, 1000 |
| HincII | GTYRAC | 1 cut(s) | 137 |
| HindII | GTYRAC | 1 cut(s) | 137 |
| HinfI | GANTC | 3 cut(s) | 531, 551, 859 |
| HpaII | CCGG | 6 cut(s) | 160, 172, 183, 241, 264, 323 |
| HphI | GGTGA | 2 cut(s) | 197, 1298 |
| Hpy166II | GTNNAC | 2 cut(s) | 137, 1265 |
| Hpy188III | TCNNGA | 5 cut(s) | 50, 377, 511, 609, 694 |
| Hpy8I | GTNNAC | 2 cut(s) | 137, 1265 |
| Hpy99I | CGWCG | 2 cut(s) | 292, 590 |
| HpyCH4IV | ACGT | 7 cut(s) | 588, 1117, 1135, 1150, 1168, 1222, 1261 |
| HpyCH4V | TGCA | 5 cut(s) | 302, 680, 824, 986, 1274 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 23, 121, 1006, 1320 |
| HpyF3I | CTNAG | 5 cut(s) | 360, 383, 407, 722, 880 |
| HpySE526I | ACGT | 7 cut(s) | 588, 1117, 1135, 1150, 1168, 1222, 1261 |
| Hsp92I | GRCGYC | 1 cut(s) | 703 |
| Hsp92II | CATG | 3 cut(s) | 380, 680, 739 |
| HspAI | GCGC | 4 cut(s) | 15, 113, 703, 1000 |
| KasI | GGCGCC | 1 cut(s) | 702 |
| Kzo9I | GATC | 1 cut(s) | 52 |
| LguI | GCTCTTC | 1 cut(s) | 798 |
| LmnI | GCTCC | 3 cut(s) | 640, 844, 1328 |
| LweI | GCATC | 2 cut(s) | 687, 739 |
| MaeI | CTAG | 6 cut(s) | 93, 104, 528, 753, 1245, 1327 |
| MaeII | ACGT | 7 cut(s) | 588, 1117, 1135, 1150, 1168, 1222, 1261 |
| MaeIII | GTNAC | 5 cut(s) | 185, 580, 1124, 1139, 1235 |
| MalI | GATC | 1 cut(s) | 54 |
| MboI | GATC | 1 cut(s) | 52 |
| MboII | GAAGA | 7 cut(s) | 52, 486, 499, 785, 851, 868, 1079 |
| MflI | RGATCY | 1 cut(s) | 52 |
| MhlI | GDGCHC | 2 cut(s) | 87, 1049 |
| MluCI | AATT | 7 cut(s) | 303, 342, 627, 849, 885, 931, 976 |
| Mly113I | GGCGCC | 1 cut(s) | 703 |
| MlyI | GAGTC | 3 cut(s) | 525, 545, 853 |
| MmeI | TCCRAC | 4 cut(s) | 219, 276, 311, 682 |
| MseI | TTAA | 2 cut(s) | 473, 1086 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1062 |
| MspA1I | CMGCKG | 3 cut(s) | 12, 110, 121 |
| MspI | CCGG | 6 cut(s) | 160, 172, 183, 241, 264, 323 |
| MspR9I | CCNGG | 1 cut(s) | 645 |
| MssI | GTTTAAAC | 1 cut(s) | 474 |
| MvaI | CCWGG | 1 cut(s) | 645 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 23, 121, 1006, 1320 |
| NarI | GGCGCC | 1 cut(s) | 703 |
| NdeI | CATATG | 1 cut(s) | 708 |
| NdeII | GATC | 1 cut(s) | 52 |
| NlaIII | CATG | 3 cut(s) | 380, 680, 739 |
| NlaIV | GGNNCC | 3 cut(s) | 704, 955, 1047 |
| NmeAIII | GCCGAG | 5 cut(s) | 30, 52, 84, 106, 150 |
| NmuCI | GTSAC | 1 cut(s) | 185 |
| NsbI | TGCGCA | 2 cut(s) | 16, 114 |
| NspI | RCATGY | 2 cut(s) | 680, 739 |
| PaeI | GCATGC | 1 cut(s) | 680 |
| PagI | TCATGA | 1 cut(s) | 376 |
| PaqCI | CACCTGC | 1 cut(s) | 31 |
| PceI | AGGCCT | 1 cut(s) | 648 |
| PciI | ACATGT | 1 cut(s) | 735 |
| PciSI | GCTCTTC | 1 cut(s) | 798 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1262 |
| PleI | GAGTC | 3 cut(s) | 525, 545, 853 |
| PluTI | GGCGCC | 1 cut(s) | 706 |
| PmaCI | CACGTG | 4 cut(s) | 1118, 1136, 1151, 1169 |
| PmeI | GTTTAAAC | 1 cut(s) | 474 |
| PmlI | CACGTG | 4 cut(s) | 1118, 1136, 1151, 1169 |
| PpsI | GAGTC | 3 cut(s) | 525, 545, 853 |
| Ppu21I | YACGTR | 4 cut(s) | 1118, 1136, 1151, 1169 |
| PscI | ACATGT | 1 cut(s) | 735 |
| PsiI | TTATAA | 1 cut(s) | 981 |
| Psp6I | CCWGG | 1 cut(s) | 643 |
| PspCI | CACGTG | 4 cut(s) | 1118, 1136, 1151, 1169 |
| PspEI | GGTNACC | 1 cut(s) | 580 |
| PspGI | CCWGG | 1 cut(s) | 643 |
| PspN4I | GGNNCC | 3 cut(s) | 704, 955, 1047 |
| PspOMI | GGGCCC | 1 cut(s) | 1045 |
| PspPI | GGNCC | 4 cut(s) | 945, 1045, 1046, 1198 |
| PstNI | CAGNNNCTG | 2 cut(s) | 23, 121 |
| PsuI | RGATCY | 1 cut(s) | 52 |
| PvuII | CAGCTG | 3 cut(s) | 12, 110, 121 |
| RsaI | GTAC | 1 cut(s) | 734 |
| RsaNI | GTAC | 1 cut(s) | 733 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1062 |
| SapI | GCTCTTC | 1 cut(s) | 798 |
| SaqAI | TTAA | 2 cut(s) | 473, 1086 |
| Sau3AI | GATC | 1 cut(s) | 52 |
| Sau96I | GGNCC | 4 cut(s) | 945, 1045, 1046, 1198 |
| SchI | GAGTC | 3 cut(s) | 525, 545, 853 |
| ScrFI | CCNGG | 1 cut(s) | 645 |
| SduI | GDGCHC | 2 cut(s) | 87, 1049 |
| SfaNI | GCATC | 2 cut(s) | 687, 739 |
| SfoI | GGCGCC | 1 cut(s) | 704 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1062 |
| SphI | GCATGC | 1 cut(s) | 680 |
| Sse9I | AATT | 7 cut(s) | 303, 342, 627, 849, 885, 931, 976 |
| SseBI | AGGCCT | 1 cut(s) | 648 |
| SsiI | CCGC | 4 cut(s) | 417, 700, 1078, 1091 |
| SspDI | GGCGCC | 1 cut(s) | 702 |
| SspI | AATATT | 4 cut(s) | 330, 399, 445, 618 |
| SspMI | CTAG | 6 cut(s) | 93, 104, 528, 753, 1245, 1327 |
| StuI | AGGCCT | 1 cut(s) | 648 |
| StyD4I | CCNGG | 1 cut(s) | 643 |
| StyI | CCWWGG | 1 cut(s) | 1244 |
| TaiI | ACGT | 7 cut(s) | 591, 1120, 1138, 1153, 1171, 1225, 1264 |
| TaqI | TCGA | 6 cut(s) | 49, 70, 148, 518, 534, 785 |
| TasI | AATT | 7 cut(s) | 303, 342, 627, 849, 885, 931, 976 |
| TatI | WGTACW | 1 cut(s) | 732 |
| TauI | GCSGC | 1 cut(s) | 703 |
| Tru1I | TTAA | 2 cut(s) | 473, 1086 |
| Tru9I | TTAA | 2 cut(s) | 473, 1086 |
| TseFI | GTSAC | 1 cut(s) | 185 |
| Tsp45I | GTSAC | 1 cut(s) | 185 |
| TspDTI | ATGAA | 5 cut(s) | 382, 393, 537, 1080, 1298 |
| TspGWI | ACGGA | 1 cut(s) | 956 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1262 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 642 |
| XapI | RAATTY | 1 cut(s) | 342 |
| XceI | RCATGY | 2 cut(s) | 680, 739 |
| XmaJI | CCTAGG | 1 cut(s) | 1244 |
| XspI | CTAG | 6 cut(s) | 93, 104, 528, 753, 1245, 1327 |