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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 474, 711 |
| AccB1I | GGYRCC | 2 cut(s) | 429, 666 |
| AccII | CGCG | 2 cut(s) | 414, 651 |
| AciI | CCGC | 2 cut(s) | 106, 761 |
| AclWI | GGATC | 2 cut(s) | 366, 603 |
| AcsI | RAATTY | 2 cut(s) | 322, 559 |
| AcyI | GRCGYC | 2 cut(s) | 430, 667 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 425, 662 |
| AgsI | TTSAA | 1 cut(s) | 121 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 6 cut(s) | 307, 317, 544, 554, 742, 793 |
| AluI | AGCT | 6 cut(s) | 307, 317, 544, 554, 742, 793 |
| Alw21I | GWGCWC | 3 cut(s) | 309, 546, 744 |
| Alw26I | GTCTC | 2 cut(s) | 37, 241 |
| AlwI | GGATC | 2 cut(s) | 366, 603 |
| ApoI | RAATTY | 2 cut(s) | 322, 559 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 150, 218 |
| AspLEI | GCGC | 4 cut(s) | 416, 432, 653, 669 |
| AspS9I | GGNCC | 2 cut(s) | 476, 713 |
| AsuHPI | GGTGA | 1 cut(s) | 750 |
| AvaII | GGWCC | 2 cut(s) | 476, 713 |
| BanI | GGYRCC | 2 cut(s) | 429, 666 |
| BanII | GRGCYC | 3 cut(s) | 309, 546, 744 |
| BauI | CACGAG | 1 cut(s) | 743 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 3 cut(s) | 309, 546, 744 |
| BccI | CCATC | 2 cut(s) | 87, 241 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 497, 531 |
| BciVI | GTATCC | 2 cut(s) | 451, 688 |
| BcoDI | GTCTC | 2 cut(s) | 37, 241 |
| BfaI | CTAG | 2 cut(s) | 83, 829 |
| BfoI | RGCGCY | 2 cut(s) | 433, 670 |
| BfuI | GTATCC | 2 cut(s) | 451, 688 |
| Bme18I | GGWCC | 2 cut(s) | 476, 713 |
| BmgT120I | GGNCC | 2 cut(s) | 476, 713 |
| BmiI | GGNNCC | 2 cut(s) | 431, 668 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| BpuEI | CTTGAG | 2 cut(s) | 416, 653 |
| Bsa29I | ATCGAT | 2 cut(s) | 270, 507 |
| BsaHI | GRCGYC | 2 cut(s) | 430, 667 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 2 cut(s) | 375, 612 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 425, 662 |
| BseCI | ATCGAT | 2 cut(s) | 270, 507 |
| BseDI | CCNNGG | 2 cut(s) | 375, 612 |
| BseGI | GGATG | 3 cut(s) | 345, 582, 828 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 425, 662 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| Bsh1236I | CGCG | 2 cut(s) | 414, 651 |
| BshNI | GGYRCC | 2 cut(s) | 429, 666 |
| BshVI | ATCGAT | 2 cut(s) | 270, 507 |
| BsiHKAI | GWGCWC | 3 cut(s) | 309, 546, 744 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 425, 662 |
| BsmAI | GTCTC | 2 cut(s) | 37, 241 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 3 cut(s) | 309, 546, 744 |
| Bsp143I | GATC | 5 cut(s) | 189, 371, 608, 813, 825 |
| BspACI | CCGC | 2 cut(s) | 106, 761 |
| BspCNI | CTCAG | 1 cut(s) | 155 |
| BspDI | ATCGAT | 2 cut(s) | 270, 507 |
| BspFNI | CGCG | 2 cut(s) | 414, 651 |
| BspHI | TCATGA | 1 cut(s) | 538 |
| BspLI | GGNNCC | 2 cut(s) | 431, 668 |
| BspPI | GGATC | 2 cut(s) | 366, 603 |
| BspQI | GCTCTTC | 1 cut(s) | 732 |
| BspT107I | GGYRCC | 2 cut(s) | 429, 666 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssECI | CCNNGG | 2 cut(s) | 375, 612 |
| BssMI | GATC | 5 cut(s) | 189, 371, 608, 813, 825 |
| BssNI | GRCGYC | 2 cut(s) | 430, 667 |
| BssSI | CACGAG | 1 cut(s) | 743 |
| Bst2BI | CACGAG | 1 cut(s) | 743 |
| Bst4CI | ACNGT | 1 cut(s) | 280 |
| Bst6I | CTCTTC | 1 cut(s) | 732 |
| BstACI | GRCGYC | 2 cut(s) | 430, 667 |
| BstDEI | CTNAG | 4 cut(s) | 142, 255, 452, 689 |
| BstDSI | CCRYGG | 2 cut(s) | 375, 612 |
| BstF5I | GGATG | 3 cut(s) | 345, 582, 828 |
| BstFNI | CGCG | 2 cut(s) | 414, 651 |
| BstH2I | RGCGCY | 2 cut(s) | 433, 670 |
| BstHHI | GCGC | 4 cut(s) | 416, 432, 653, 669 |
| BstKTI | GATC | 5 cut(s) | 192, 374, 611, 816, 828 |
| BstMAI | GTCTC | 2 cut(s) | 37, 241 |
| BstMBI | GATC | 5 cut(s) | 189, 371, 608, 813, 825 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 436, 673, 769, 790 |
| BstUI | CGCG | 2 cut(s) | 414, 651 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstX2I | RGATCY | 2 cut(s) | 371, 608 |
| BstYI | RGATCY | 2 cut(s) | 371, 608 |
| Bsu15I | ATCGAT | 2 cut(s) | 270, 507 |
| BsuI | GTATCC | 2 cut(s) | 451, 688 |
| BsuTUI | ATCGAT | 2 cut(s) | 270, 507 |
| BtgI | CCRYGG | 2 cut(s) | 375, 612 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 3 cut(s) | 345, 582, 828 |
| CciI | TCATGA | 1 cut(s) | 538 |
| CfoI | GCGC | 4 cut(s) | 416, 432, 653, 669 |
| Cfr13I | GGNCC | 2 cut(s) | 476, 713 |
| ClaI | ATCGAT | 2 cut(s) | 270, 507 |
| CviAII | CATG | 3 cut(s) | 338, 539, 575 |
| CviJI | RGCY | 8 cut(s) | 25, 102, 307, 317, 544, 554, 742, 793 |
| CviKI_1 | RGCY | 8 cut(s) | 25, 102, 307, 317, 544, 554, 742, 793 |
| DdeI | CTNAG | 4 cut(s) | 142, 255, 452, 689 |
| DinI | GGCGCC | 2 cut(s) | 431, 668 |
| DpnI | GATC | 5 cut(s) | 191, 373, 610, 815, 827 |
| DpnII | GATC | 5 cut(s) | 189, 371, 608, 813, 825 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 474, 711 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 474, 711 |
| Eam1104I | CTCTTC | 1 cut(s) | 732 |
| EarI | CTCTTC | 1 cut(s) | 732 |
| Ecl136II | GAGCTC | 3 cut(s) | 307, 544, 742 |
| Eco24I | GRGCYC | 3 cut(s) | 309, 546, 744 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 2 cut(s) | 476, 713 |
| Eco53kI | GAGCTC | 3 cut(s) | 307, 544, 742 |
| EcoICRI | GAGCTC | 3 cut(s) | 307, 544, 742 |
| EcoT38I | GRGCYC | 3 cut(s) | 309, 546, 744 |
| EgeI | GGCGCC | 2 cut(s) | 431, 668 |
| EheI | GGCGCC | 2 cut(s) | 431, 668 |
| FaeI | CATG | 3 cut(s) | 341, 542, 578 |
| FatI | CATG | 3 cut(s) | 337, 538, 574 |
| FokI | GGATG | 2 cut(s) | 332, 569 |
| FriOI | GRGCYC | 3 cut(s) | 309, 546, 744 |
| FspBI | CTAG | 2 cut(s) | 83, 829 |
| GlaI | GCGC | 4 cut(s) | 415, 431, 652, 668 |
| HaeII | RGCGCY | 2 cut(s) | 433, 670 |
| HhaI | GCGC | 4 cut(s) | 416, 432, 653, 669 |
| Hin1I | GRCGYC | 2 cut(s) | 430, 667 |
| Hin1II | CATG | 3 cut(s) | 341, 542, 578 |
| Hin6I | GCGC | 4 cut(s) | 414, 430, 651, 667 |
| HinP1I | GCGC | 4 cut(s) | 414, 430, 651, 667 |
| HinfI | GANTC | 5 cut(s) | 65, 267, 398, 504, 635 |
| HphI | GGTGA | 1 cut(s) | 750 |
| Hpy166II | GTNNAC | 1 cut(s) | 496 |
| Hpy188I | TCNGA | 1 cut(s) | 145 |
| Hpy8I | GTNNAC | 1 cut(s) | 496 |
| HpyAV | CCTTC | 1 cut(s) | 15 |
| HpyCH4III | ACNGT | 1 cut(s) | 280 |
| HpyCH4IV | ACGT | 3 cut(s) | 57, 469, 706 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 518 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 436, 673, 769, 790 |
| HpyF3I | CTNAG | 4 cut(s) | 142, 255, 452, 689 |
| HpySE526I | ACGT | 3 cut(s) | 57, 469, 706 |
| Hsp92I | GRCGYC | 2 cut(s) | 430, 667 |
| Hsp92II | CATG | 3 cut(s) | 341, 542, 578 |
| HspAI | GCGC | 4 cut(s) | 414, 430, 651, 667 |
| KasI | GGCGCC | 2 cut(s) | 429, 666 |
| Kzo9I | GATC | 5 cut(s) | 189, 371, 608, 813, 825 |
| LguI | GCTCTTC | 1 cut(s) | 732 |
| LmnI | GCTCC | 2 cut(s) | 314, 551 |
| LpnPI | CCDG | 8 cut(s) | 31, 83, 90, 246, 450, 459, 687, 696 |
| MaeI | CTAG | 2 cut(s) | 83, 829 |
| MaeII | ACGT | 3 cut(s) | 57, 469, 706 |
| MaeIII | GTNAC | 4 cut(s) | 62, 274, 511, 756 |
| MalI | GATC | 5 cut(s) | 191, 373, 610, 815, 827 |
| MboI | GATC | 5 cut(s) | 189, 371, 608, 813, 825 |
| MboII | GAAGA | 8 cut(s) | 20, 23, 226, 367, 604, 749, 760, 823 |
| MflI | RGATCY | 2 cut(s) | 371, 608 |
| MhlI | GDGCHC | 3 cut(s) | 309, 546, 744 |
| MluCI | AATT | 7 cut(s) | 173, 322, 364, 403, 559, 601, 640 |
| Mly113I | GGCGCC | 2 cut(s) | 430, 667 |
| MlyI | GAGTC | 3 cut(s) | 59, 407, 644 |
| MnlI | CCTC | 4 cut(s) | 113, 419, 656, 813 |
| MroXI | GAANNNNTTC | 2 cut(s) | 150, 218 |
| MseI | TTAA | 1 cut(s) | 159 |
| MslI | CAYNNNNRTG | 2 cut(s) | 350, 587 |
| MvnI | CGCG | 2 cut(s) | 414, 651 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 436, 673, 769, 790 |
| NarI | GGCGCC | 2 cut(s) | 430, 667 |
| NdeII | GATC | 5 cut(s) | 189, 371, 608, 813, 825 |
| NlaIII | CATG | 3 cut(s) | 341, 542, 578 |
| NlaIV | GGNNCC | 2 cut(s) | 431, 668 |
| NmuCI | GTSAC | 2 cut(s) | 62, 756 |
| PagI | TCATGA | 1 cut(s) | 538 |
| PciSI | GCTCTTC | 1 cut(s) | 732 |
| PdmI | GAANNNNTTC | 2 cut(s) | 150, 218 |
| PfeI | GAWTC | 2 cut(s) | 267, 504 |
| PleI | GAGTC | 3 cut(s) | 59, 406, 643 |
| PluTI | GGCGCC | 2 cut(s) | 433, 670 |
| PpsI | GAGTC | 3 cut(s) | 59, 406, 643 |
| Psp124BI | GAGCTC | 3 cut(s) | 309, 546, 744 |
| PspN4I | GGNNCC | 2 cut(s) | 431, 668 |
| PspPI | GGNCC | 2 cut(s) | 476, 713 |
| PsuI | RGATCY | 2 cut(s) | 371, 608 |
| RseI | CAYNNNNRTG | 2 cut(s) | 350, 587 |
| SacI | GAGCTC | 3 cut(s) | 309, 546, 744 |
| SapI | GCTCTTC | 1 cut(s) | 732 |
| SaqAI | TTAA | 1 cut(s) | 159 |
| Sau3AI | GATC | 5 cut(s) | 189, 371, 608, 813, 825 |
| Sau96I | GGNCC | 2 cut(s) | 476, 713 |
| SchI | GAGTC | 3 cut(s) | 59, 407, 644 |
| SduI | GDGCHC | 3 cut(s) | 309, 546, 744 |
| SfoI | GGCGCC | 2 cut(s) | 431, 668 |
| SinI | GGWCC | 2 cut(s) | 476, 713 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 350, 587 |
| SmlI | CTYRAG | 2 cut(s) | 395, 632 |
| SmoI | CTYRAG | 2 cut(s) | 395, 632 |
| Sse9I | AATT | 7 cut(s) | 173, 322, 364, 403, 559, 601, 640 |
| SsiI | CCGC | 2 cut(s) | 106, 761 |
| SspDI | GGCGCC | 2 cut(s) | 429, 666 |
| SspMI | CTAG | 2 cut(s) | 83, 829 |
| SstI | GAGCTC | 3 cut(s) | 309, 546, 744 |
| TaaI | ACNGT | 1 cut(s) | 280 |
| TaiI | ACGT | 3 cut(s) | 60, 472, 709 |
| TaqI | TCGA | 7 cut(s) | 39, 265, 270, 368, 502, 507, 605 |
| TasI | AATT | 7 cut(s) | 173, 322, 364, 403, 559, 601, 640 |
| TfiI | GAWTC | 2 cut(s) | 267, 504 |
| Tru1I | TTAA | 1 cut(s) | 159 |
| Tru9I | TTAA | 1 cut(s) | 159 |
| TseFI | GTSAC | 2 cut(s) | 62, 756 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 756 |
| TspDTI | ATGAA | 5 cut(s) | 17, 21, 335, 527, 572 |
| TspGWI | ACGGA | 3 cut(s) | 50, 364, 601 |
| VpaK11BI | GGWCC | 2 cut(s) | 476, 713 |
| XapI | RAATTY | 2 cut(s) | 322, 559 |
| XmnI | GAANNNNTTC | 2 cut(s) | 150, 218 |
| XspI | CTAG | 2 cut(s) | 83, 829 |