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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 30, 154 |
| AclWI | GGATC | 3 cut(s) | 68, 197, 203 |
| AcsI | RAATTY | 1 cut(s) | 175 |
| AfaI | GTAC | 1 cut(s) | 497 |
| AgsI | TTSAA | 1 cut(s) | 625 |
| AjiI | CACGTC | 1 cut(s) | 385 |
| AjnI | CCWGG | 2 cut(s) | 354, 378 |
| AluBI | AGCT | 2 cut(s) | 207, 404 |
| AluI | AGCT | 2 cut(s) | 207, 404 |
| Alw26I | GTCTC | 2 cut(s) | 131, 745 |
| AlwI | GGATC | 3 cut(s) | 68, 197, 203 |
| AoxI | GGCC | 1 cut(s) | 342 |
| ApoI | RAATTY | 1 cut(s) | 175 |
| AsuHPI | GGTGA | 3 cut(s) | 77, 92, 143 |
| BbsI | GAAGAC | 1 cut(s) | 522 |
| BccI | CCATC | 4 cut(s) | 87, 591, 667, 745 |
| BceAI | ACGGC | 1 cut(s) | 2 |
| BciT130I | CCWGG | 2 cut(s) | 356, 380 |
| BcoDI | GTCTC | 2 cut(s) | 131, 745 |
| BfaI | CTAG | 1 cut(s) | 587 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 437 |
| BlpI | GCTNAGC | 1 cut(s) | 203 |
| Bme1390I | CCNGG | 2 cut(s) | 356, 380 |
| BmgBI | CACGTC | 1 cut(s) | 385 |
| BmiI | GGNNCC | 1 cut(s) | 536 |
| BmrFI | CCNGG | 2 cut(s) | 356, 380 |
| BmsI | GCATC | 2 cut(s) | 343, 691 |
| BpiI | GAAGAC | 1 cut(s) | 522 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 49, 81 |
| BpmI | CTGGAG | 1 cut(s) | 476 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 203 |
| BpuEI | CTTGAG | 3 cut(s) | 323, 353, 390 |
| BsaBI | GATNNNNATC | 1 cut(s) | 194 |
| BsaJI | CCNNGG | 2 cut(s) | 18, 145 |
| Bse1I | ACTGG | 2 cut(s) | 298, 493 |
| Bse8I | GATNNNNATC | 1 cut(s) | 194 |
| BseBI | CCWGG | 2 cut(s) | 356, 380 |
| BseDI | CCNNGG | 2 cut(s) | 18, 145 |
| BseGI | GGATG | 4 cut(s) | 215, 255, 459, 487 |
| BseJI | GATNNNNATC | 1 cut(s) | 194 |
| BseMII | CTCAG | 1 cut(s) | 217 |
| BseNI | ACTGG | 2 cut(s) | 298, 493 |
| BseRI | GAGGAG | 2 cut(s) | 119, 599 |
| BshFI | GGCC | 1 cut(s) | 344 |
| BsmAI | GTCTC | 2 cut(s) | 131, 745 |
| BsmBI | CGTCTC | 2 cut(s) | 131, 745 |
| BsnI | GGCC | 1 cut(s) | 344 |
| Bsp143I | GATC | 3 cut(s) | 60, 189, 195 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 203 |
| BspACI | CCGC | 2 cut(s) | 30, 154 |
| BspANI | GGCC | 1 cut(s) | 344 |
| BspCNI | CTCAG | 1 cut(s) | 216 |
| BspLI | GGNNCC | 1 cut(s) | 536 |
| BspPI | GGATC | 3 cut(s) | 68, 197, 203 |
| BspQI | GCTCTTC | 1 cut(s) | 214 |
| BsrI | ACTGG | 2 cut(s) | 298, 493 |
| BssECI | CCNNGG | 2 cut(s) | 18, 145 |
| BssMI | GATC | 3 cut(s) | 60, 189, 195 |
| Bst2UI | CCWGG | 2 cut(s) | 356, 380 |
| Bst4CI | ACNGT | 2 cut(s) | 394, 631 |
| Bst6I | CTCTTC | 2 cut(s) | 214, 477 |
| BstC8I | GCNNGC | 2 cut(s) | 15, 402 |
| BstDEI | CTNAG | 2 cut(s) | 203, 433 |
| BstDSI | CCRYGG | 1 cut(s) | 18 |
| BstEII | GGTNACC | 1 cut(s) | 149 |
| BstF5I | GGATG | 4 cut(s) | 215, 255, 459, 487 |
| BstKTI | GATC | 3 cut(s) | 63, 192, 198 |
| BstMAI | GTCTC | 2 cut(s) | 131, 745 |
| BstMBI | GATC | 3 cut(s) | 60, 189, 195 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 437 |
| BstNI | CCWGG | 2 cut(s) | 356, 380 |
| BstPI | GGTNACC | 1 cut(s) | 149 |
| BstSCI | CCNGG | 2 cut(s) | 354, 378 |
| BstV2I | GAAGAC | 1 cut(s) | 522 |
| BstX2I | RGATCY | 2 cut(s) | 60, 189 |
| BstYI | RGATCY | 2 cut(s) | 60, 189 |
| BsuRI | GGCC | 1 cut(s) | 344 |
| BtgI | CCRYGG | 1 cut(s) | 18 |
| BtgZI | GCGATG | 1 cut(s) | 719 |
| BtrI | CACGTC | 1 cut(s) | 385 |
| BtsCI | GGATG | 4 cut(s) | 215, 255, 459, 487 |
| Cac8I | GCNNGC | 2 cut(s) | 15, 402 |
| Csp6I | GTAC | 1 cut(s) | 496 |
| CviAII | CATG | 1 cut(s) | 786 |
| CviQI | GTAC | 1 cut(s) | 496 |
| DdeI | CTNAG | 2 cut(s) | 203, 433 |
| DpnI | GATC | 3 cut(s) | 62, 191, 197 |
| DpnII | GATC | 3 cut(s) | 60, 189, 195 |
| Eam1104I | CTCTTC | 2 cut(s) | 214, 477 |
| EarI | CTCTTC | 2 cut(s) | 214, 477 |
| Eco91I | GGTNACC | 1 cut(s) | 149 |
| EcoO65I | GGTNACC | 1 cut(s) | 149 |
| EcoRII | CCWGG | 2 cut(s) | 354, 378 |
| Esp3I | CGTCTC | 2 cut(s) | 131, 745 |
| FaeI | CATG | 1 cut(s) | 789 |
| FaiI | YATR | 9 cut(s) | 187, 477, 479, 504, 506, 603, 682, 693, 787 |
| FatI | CATG | 1 cut(s) | 785 |
| FauNDI | CATATG | 1 cut(s) | 477 |
| FokI | GGATG | 4 cut(s) | 202, 262, 446, 494 |
| FspBI | CTAG | 1 cut(s) | 587 |
| GsuI | CTGGAG | 1 cut(s) | 476 |
| HaeIII | GGCC | 1 cut(s) | 344 |
| Hin1II | CATG | 1 cut(s) | 789 |
| HincII | GTYRAC | 1 cut(s) | 25 |
| HindII | GTYRAC | 1 cut(s) | 25 |
| HinfI | GANTC | 4 cut(s) | 364, 469, 569, 721 |
| HphI | GGTGA | 3 cut(s) | 77, 92, 143 |
| Hpy166II | GTNNAC | 2 cut(s) | 25, 328 |
| Hpy188I | TCNGA | 1 cut(s) | 182 |
| Hpy188III | TCNNGA | 6 cut(s) | 193, 300, 320, 581, 625, 635 |
| Hpy8I | GTNNAC | 2 cut(s) | 25, 328 |
| Hpy99I | CGWCG | 1 cut(s) | 44 |
| HpyAV | CCTTC | 2 cut(s) | 519, 742 |
| HpyCH4III | ACNGT | 2 cut(s) | 394, 631 |
| HpyCH4IV | ACGT | 2 cut(s) | 384, 561 |
| HpyCH4V | TGCA | 3 cut(s) | 13, 660, 758 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 437 |
| HpyF3I | CTNAG | 2 cut(s) | 203, 433 |
| HpySE526I | ACGT | 2 cut(s) | 384, 561 |
| Hsp92II | CATG | 1 cut(s) | 789 |
| Kzo9I | GATC | 3 cut(s) | 60, 189, 195 |
| LguI | GCTCTTC | 1 cut(s) | 214 |
| LmnI | GCTCC | 2 cut(s) | 495, 540 |
| LweI | GCATC | 2 cut(s) | 343, 691 |
| MaeI | CTAG | 1 cut(s) | 587 |
| MaeII | ACGT | 2 cut(s) | 384, 561 |
| MaeIII | GTNAC | 3 cut(s) | 149, 566, 778 |
| MalI | GATC | 3 cut(s) | 62, 191, 197 |
| MboI | GATC | 3 cut(s) | 60, 189, 195 |
| MboII | GAAGA | 6 cut(s) | 74, 101, 201, 204, 464, 527 |
| MflI | RGATCY | 2 cut(s) | 60, 189 |
| MluCI | AATT | 3 cut(s) | 175, 266, 677 |
| MlyI | GAGTC | 3 cut(s) | 463, 563, 715 |
| MseI | TTAA | 2 cut(s) | 255, 663 |
| MslI | CAYNNNNRTG | 2 cut(s) | 464, 480 |
| MspA1I | CMGCKG | 1 cut(s) | 32 |
| MspR9I | CCNGG | 2 cut(s) | 356, 380 |
| MvaI | CCWGG | 2 cut(s) | 356, 380 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 437 |
| NdeI | CATATG | 1 cut(s) | 477 |
| NdeII | GATC | 3 cut(s) | 60, 189, 195 |
| NlaIII | CATG | 1 cut(s) | 789 |
| NlaIV | GGNNCC | 1 cut(s) | 536 |
| NmuCI | GTSAC | 2 cut(s) | 149, 566 |
| PciSI | GCTCTTC | 1 cut(s) | 214 |
| PfeI | GAWTC | 1 cut(s) | 364 |
| PfoI | TCCNGGA | 1 cut(s) | 354 |
| PleI | GAGTC | 3 cut(s) | 463, 563, 715 |
| PpsI | GAGTC | 3 cut(s) | 463, 563, 715 |
| Psp6I | CCWGG | 2 cut(s) | 354, 378 |
| PspEI | GGTNACC | 1 cut(s) | 149 |
| PspGI | CCWGG | 2 cut(s) | 354, 378 |
| PspN4I | GGNNCC | 1 cut(s) | 536 |
| PsuI | RGATCY | 2 cut(s) | 60, 189 |
| RsaI | GTAC | 1 cut(s) | 497 |
| RsaNI | GTAC | 1 cut(s) | 496 |
| RseI | CAYNNNNRTG | 2 cut(s) | 464, 480 |
| SapI | GCTCTTC | 1 cut(s) | 214 |
| SaqAI | TTAA | 2 cut(s) | 255, 663 |
| Sau3AI | GATC | 3 cut(s) | 60, 189, 195 |
| SchI | GAGTC | 3 cut(s) | 463, 563, 715 |
| ScrFI | CCNGG | 2 cut(s) | 356, 380 |
| SfaNI | GCATC | 2 cut(s) | 343, 691 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 464, 480 |
| SmlI | CTYRAG | 3 cut(s) | 338, 368, 405 |
| SmoI | CTYRAG | 3 cut(s) | 338, 368, 405 |
| Sse9I | AATT | 3 cut(s) | 175, 266, 677 |
| SsiI | CCGC | 2 cut(s) | 30, 154 |
| SspMI | CTAG | 1 cut(s) | 587 |
| StyD4I | CCNGG | 2 cut(s) | 354, 378 |
| TaaI | ACNGT | 2 cut(s) | 394, 631 |
| TaiI | ACGT | 2 cut(s) | 387, 564 |
| TaqI | TCGA | 3 cut(s) | 39, 543, 647 |
| TaqII | GACCGA | 1 cut(s) | 137 |
| TasI | AATT | 3 cut(s) | 175, 266, 677 |
| TfiI | GAWTC | 1 cut(s) | 364 |
| Tru1I | TTAA | 2 cut(s) | 255, 663 |
| Tru9I | TTAA | 2 cut(s) | 255, 663 |
| TseFI | GTSAC | 2 cut(s) | 149, 566 |
| Tsp45I | GTSAC | 2 cut(s) | 149, 566 |
| TspDTI | ATGAA | 5 cut(s) | 204, 363, 464, 521, 561 |
| TspGWI | ACGGA | 1 cut(s) | 113 |
| XapI | RAATTY | 1 cut(s) | 175 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 352 |
| XspI | CTAG | 1 cut(s) | 587 |