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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 438 |
| AarI | CACCTGC | 1 cut(s) | 630 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 549 |
| Acc36I | ACCTGC | 1 cut(s) | 630 |
| AccB1I | GGYRCC | 1 cut(s) | 634 |
| AciI | CCGC | 3 cut(s) | 562, 674, 687 |
| AclWI | GGATC | 4 cut(s) | 94, 107, 371, 614 |
| AcoI | YGGCCR | 1 cut(s) | 655 |
| AcsI | RAATTY | 2 cut(s) | 347, 600 |
| AcyI | GRCGYC | 2 cut(s) | 187, 671 |
| AfaI | GTAC | 2 cut(s) | 148, 218 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 500, 501, 571, 697 |
| AgsI | TTSAA | 6 cut(s) | 93, 116, 352, 444, 470, 706 |
| AluBI | AGCT | 4 cut(s) | 16, 317, 382, 404 |
| AluI | AGCT | 4 cut(s) | 16, 317, 382, 404 |
| Alw21I | GWGCWC | 1 cut(s) | 621 |
| Alw26I | GTCTC | 2 cut(s) | 178, 316 |
| AlwI | GGATC | 4 cut(s) | 94, 107, 371, 614 |
| AoxI | GGCC | 3 cut(s) | 446, 655, 688 |
| ApoI | RAATTY | 2 cut(s) | 347, 600 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 122, 154 |
| AseI | ATTAAT | 1 cut(s) | 387 |
| AspLEI | GCGC | 2 cut(s) | 256, 627 |
| AspS9I | GGNCC | 2 cut(s) | 551, 689 |
| AvaII | GGWCC | 1 cut(s) | 551 |
| BaeGI | GKGCMC | 1 cut(s) | 507 |
| BamHI | GGATCC | 1 cut(s) | 99 |
| BanI | GGYRCC | 1 cut(s) | 634 |
| BauI | CACGAG | 1 cut(s) | 367 |
| Bbv12I | GWGCWC | 1 cut(s) | 621 |
| BccI | CCATC | 2 cut(s) | 666, 685 |
| BceAI | ACGGC | 1 cut(s) | 165 |
| BcoDI | GTCTC | 2 cut(s) | 178, 316 |
| BfaI | CTAG | 2 cut(s) | 237, 257 |
| BfmI | CTRYAG | 2 cut(s) | 399, 450 |
| BfuAI | ACCTGC | 1 cut(s) | 630 |
| BisI | GCNGC | 2 cut(s) | 674, 688 |
| BlsI | GCNGC | 2 cut(s) | 675, 689 |
| Bme18I | GGWCC | 1 cut(s) | 551 |
| BmgT120I | GGNCC | 2 cut(s) | 551, 689 |
| BmiI | GGNNCC | 3 cut(s) | 101, 518, 636 |
| BmsI | GCATC | 1 cut(s) | 223 |
| BsaHI | GRCGYC | 2 cut(s) | 187, 671 |
| BsaJI | CCNNGG | 1 cut(s) | 692 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 702 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 500, 501, 571, 697 |
| Bse1I | ACTGG | 2 cut(s) | 46, 361 |
| BseDI | CCNNGG | 1 cut(s) | 692 |
| BseGI | GGATG | 3 cut(s) | 76, 238, 677 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 500, 501, 571, 697 |
| BseMII | CTCAG | 1 cut(s) | 327 |
| BseNI | ACTGG | 2 cut(s) | 46, 361 |
| BseRI | GAGGAG | 1 cut(s) | 629 |
| BseSI | GKGCMC | 1 cut(s) | 507 |
| BshFI | GGCC | 3 cut(s) | 448, 657, 690 |
| BshNI | GGYRCC | 1 cut(s) | 634 |
| BsiHKAI | GWGCWC | 1 cut(s) | 621 |
| BsiWI | CGTACG | 1 cut(s) | 146 |
| BslFI | GGGAC | 1 cut(s) | 546 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 500, 501, 571, 697 |
| BsmAI | GTCTC | 2 cut(s) | 178, 316 |
| BsmBI | CGTCTC | 2 cut(s) | 178, 316 |
| BsmFI | GGGAC | 1 cut(s) | 546 |
| BsnI | GGCC | 3 cut(s) | 448, 657, 690 |
| Bsp1286I | GDGCHC | 2 cut(s) | 507, 621 |
| Bsp143I | GATC | 3 cut(s) | 99, 363, 606 |
| BspACI | CCGC | 3 cut(s) | 562, 674, 687 |
| BspANI | GGCC | 3 cut(s) | 448, 657, 690 |
| BspCNI | CTCAG | 1 cut(s) | 326 |
| BspLI | GGNNCC | 3 cut(s) | 101, 518, 636 |
| BspMI | ACCTGC | 1 cut(s) | 630 |
| BspPI | GGATC | 4 cut(s) | 94, 107, 371, 614 |
| BspQI | GCTCTTC | 1 cut(s) | 255 |
| BspT107I | GGYRCC | 1 cut(s) | 634 |
| BsrI | ACTGG | 2 cut(s) | 46, 361 |
| BssECI | CCNNGG | 1 cut(s) | 692 |
| BssMI | GATC | 3 cut(s) | 99, 363, 606 |
| BssNI | GRCGYC | 2 cut(s) | 187, 671 |
| BssSI | CACGAG | 1 cut(s) | 367 |
| BssT1I | CCWWGG | 1 cut(s) | 692 |
| Bst2BI | CACGAG | 1 cut(s) | 367 |
| Bst4CI | ACNGT | 1 cut(s) | 634 |
| Bst6I | CTCTTC | 1 cut(s) | 255 |
| BstACI | GRCGYC | 2 cut(s) | 187, 671 |
| BstDEI | CTNAG | 2 cut(s) | 313, 459 |
| BstF5I | GGATG | 3 cut(s) | 76, 238, 677 |
| BstHHI | GCGC | 2 cut(s) | 256, 627 |
| BstKTI | GATC | 3 cut(s) | 102, 366, 609 |
| BstMAI | GTCTC | 2 cut(s) | 178, 316 |
| BstMBI | GATC | 3 cut(s) | 99, 363, 606 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 262, 271, 331, 673, 715 |
| BstSFI | CTRYAG | 2 cut(s) | 399, 450 |
| BstSLI | GKGCMC | 1 cut(s) | 507 |
| BstX2I | RGATCY | 1 cut(s) | 99 |
| BstYI | RGATCY | 1 cut(s) | 99 |
| BsuRI | GGCC | 3 cut(s) | 448, 657, 690 |
| BtsCI | GGATG | 3 cut(s) | 76, 238, 677 |
| BtsI | GCAGTG | 1 cut(s) | 165 |
| BtsIMutI | CAGTG | 2 cut(s) | 165, 354 |
| BveI | ACCTGC | 1 cut(s) | 630 |
| CfoI | GCGC | 2 cut(s) | 256, 627 |
| Cfr13I | GGNCC | 2 cut(s) | 551, 689 |
| CseI | GACGC | 2 cut(s) | 195, 679 |
| Csp6I | GTAC | 2 cut(s) | 147, 217 |
| CviAII | CATG | 5 cut(s) | 193, 220, 394, 413, 488 |
| CviQI | GTAC | 2 cut(s) | 147, 217 |
| DdeI | CTNAG | 2 cut(s) | 313, 459 |
| DpnI | GATC | 3 cut(s) | 101, 365, 608 |
| DpnII | GATC | 3 cut(s) | 99, 363, 606 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 549 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 549 |
| EaeI | YGGCCR | 1 cut(s) | 655 |
| Eam1104I | CTCTTC | 1 cut(s) | 255 |
| EarI | CTCTTC | 1 cut(s) | 255 |
| Eco130I | CCWWGG | 1 cut(s) | 692 |
| Eco147I | AGGCCT | 1 cut(s) | 448 |
| Eco47I | GGWCC | 1 cut(s) | 551 |
| EcoRI | GAATTC | 1 cut(s) | 347 |
| EcoT14I | CCWWGG | 1 cut(s) | 692 |
| ErhI | CCWWGG | 1 cut(s) | 692 |
| Esp3I | CGTCTC | 2 cut(s) | 178, 316 |
| FaeI | CATG | 5 cut(s) | 196, 223, 397, 416, 491 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 37, 685, 717 |
| FaqI | GGGAC | 1 cut(s) | 546 |
| FatI | CATG | 5 cut(s) | 192, 219, 393, 412, 487 |
| Fnu4HI | GCNGC | 2 cut(s) | 674, 688 |
| FokI | GGATG | 3 cut(s) | 83, 245, 664 |
| Fsp4HI | GCNGC | 2 cut(s) | 674, 688 |
| FspBI | CTAG | 2 cut(s) | 237, 257 |
| GlaI | GCGC | 2 cut(s) | 255, 626 |
| GluI | GCNGC | 2 cut(s) | 674, 688 |
| HaeIII | GGCC | 3 cut(s) | 448, 657, 690 |
| HgaI | GACGC | 2 cut(s) | 195, 679 |
| HhaI | GCGC | 2 cut(s) | 256, 627 |
| Hin1I | GRCGYC | 2 cut(s) | 187, 671 |
| Hin1II | CATG | 5 cut(s) | 196, 223, 397, 416, 491 |
| Hin6I | GCGC | 2 cut(s) | 254, 625 |
| HinP1I | GCGC | 2 cut(s) | 254, 625 |
| HindIII | AAGCTT | 1 cut(s) | 14 |
| HinfI | GANTC | 1 cut(s) | 35 |
| Hpy188I | TCNGA | 2 cut(s) | 49, 209 |
| Hpy188III | TCNNGA | 5 cut(s) | 128, 178, 367, 427, 470 |
| Hpy99I | CGWCG | 1 cut(s) | 673 |
| HpyAV | CCTTC | 1 cut(s) | 313 |
| HpyCH4III | ACNGT | 1 cut(s) | 634 |
| HpyCH4IV | ACGT | 2 cut(s) | 544, 650 |
| HpyCH4V | TGCA | 1 cut(s) | 491 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 262, 271, 331, 673, 715 |
| HpyF3I | CTNAG | 2 cut(s) | 313, 459 |
| HpySE526I | ACGT | 2 cut(s) | 544, 650 |
| Hsp92I | GRCGYC | 2 cut(s) | 187, 671 |
| Hsp92II | CATG | 5 cut(s) | 196, 223, 397, 416, 491 |
| HspAI | GCGC | 2 cut(s) | 254, 625 |
| Kzo9I | GATC | 3 cut(s) | 99, 363, 606 |
| LguI | GCTCTTC | 1 cut(s) | 255 |
| LmnI | GCTCC | 3 cut(s) | 210, 616, 723 |
| LpnPI | CCDG | 4 cut(s) | 27, 342, 635, 697 |
| LweI | GCATC | 1 cut(s) | 223 |
| MaeI | CTAG | 2 cut(s) | 237, 257 |
| MaeII | ACGT | 2 cut(s) | 544, 650 |
| MaeIII | GTNAC | 1 cut(s) | 64 |
| MalI | GATC | 3 cut(s) | 101, 365, 608 |
| MboI | GATC | 3 cut(s) | 99, 363, 606 |
| MboII | GAAGA | 4 cut(s) | 272, 415, 442, 587 |
| MflI | RGATCY | 1 cut(s) | 99 |
| MhlI | GDGCHC | 2 cut(s) | 507, 621 |
| MluCI | AATT | 9 cut(s) | 111, 242, 282, 347, 384, 433, 439, 478, 600 |
| MlyI | GAGTC | 1 cut(s) | 29 |
| MnlI | CCTC | 9 cut(s) | 95, 143, 363, 466, 494, 507, 607, 638, 723 |
| MseI | TTAA | 1 cut(s) | 387 |
| MslI | CAYNNNNRTG | 2 cut(s) | 179, 425 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 262, 271, 331, 673, 715 |
| NdeII | GATC | 3 cut(s) | 99, 363, 606 |
| NlaIII | CATG | 5 cut(s) | 196, 223, 397, 416, 491 |
| NlaIV | GGNNCC | 3 cut(s) | 101, 518, 636 |
| NmuCI | GTSAC | 1 cut(s) | 64 |
| PaqCI | CACCTGC | 1 cut(s) | 630 |
| PceI | AGGCCT | 1 cut(s) | 448 |
| PciSI | GCTCTTC | 1 cut(s) | 255 |
| Pfl23II | CGTACG | 1 cut(s) | 146 |
| PkrI | GCNGC | 2 cut(s) | 675, 689 |
| PleI | GAGTC | 1 cut(s) | 29 |
| PpsI | GAGTC | 1 cut(s) | 29 |
| PshBI | ATTAAT | 1 cut(s) | 387 |
| PsiI | TTATAA | 1 cut(s) | 438 |
| PspLI | CGTACG | 1 cut(s) | 146 |
| PspN4I | GGNNCC | 3 cut(s) | 101, 518, 636 |
| PspPI | GGNCC | 2 cut(s) | 551, 689 |
| PsuI | RGATCY | 1 cut(s) | 99 |
| RsaI | GTAC | 2 cut(s) | 148, 218 |
| RsaNI | GTAC | 2 cut(s) | 147, 217 |
| RseI | CAYNNNNRTG | 2 cut(s) | 179, 425 |
| SapI | GCTCTTC | 1 cut(s) | 255 |
| SaqAI | TTAA | 1 cut(s) | 387 |
| SatI | GCNGC | 2 cut(s) | 674, 688 |
| Sau3AI | GATC | 3 cut(s) | 99, 363, 606 |
| Sau96I | GGNCC | 2 cut(s) | 551, 689 |
| SchI | GAGTC | 1 cut(s) | 29 |
| SduI | GDGCHC | 2 cut(s) | 507, 621 |
| SfaNI | GCATC | 1 cut(s) | 223 |
| SfcI | CTRYAG | 2 cut(s) | 399, 450 |
| SinI | GGWCC | 1 cut(s) | 551 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 179, 425 |
| Sse9I | AATT | 9 cut(s) | 111, 242, 282, 347, 384, 433, 439, 478, 600 |
| SseBI | AGGCCT | 1 cut(s) | 448 |
| SsiI | CCGC | 3 cut(s) | 562, 674, 687 |
| SspMI | CTAG | 2 cut(s) | 237, 257 |
| StuI | AGGCCT | 1 cut(s) | 448 |
| StyI | CCWWGG | 1 cut(s) | 692 |
| TaaI | ACNGT | 1 cut(s) | 634 |
| TaiI | ACGT | 2 cut(s) | 547, 653 |
| TaqI | TCGA | 3 cut(s) | 5, 340, 597 |
| TasI | AATT | 9 cut(s) | 111, 242, 282, 347, 384, 433, 439, 478, 600 |
| TatI | WGTACW | 1 cut(s) | 216 |
| TauI | GCSGC | 2 cut(s) | 676, 690 |
| Tru1I | TTAA | 1 cut(s) | 387 |
| Tru9I | TTAA | 1 cut(s) | 387 |
| TscAI | CASTG | 2 cut(s) | 172, 361 |
| TseFI | GTSAC | 1 cut(s) | 64 |
| Tsp45I | GTSAC | 1 cut(s) | 64 |
| TspDTI | ATGAA | 2 cut(s) | 365, 476 |
| TspGWI | ACGGA | 2 cut(s) | 83, 376 |
| TspRI | CASTG | 2 cut(s) | 172, 361 |
| VpaK11BI | GGWCC | 1 cut(s) | 551 |
| VspI | ATTAAT | 1 cut(s) | 387 |
| XapI | RAATTY | 2 cut(s) | 347, 600 |
| XspI | CTAG | 2 cut(s) | 237, 257 |