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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 471 |
| AccB1I | GGYRCC | 2 cut(s) | 426, 584 |
| AccI | GTMKAC | 1 cut(s) | 691 |
| AccII | CGCG | 1 cut(s) | 411 |
| AccIII | TCCGGA | 1 cut(s) | 391 |
| AciI | CCGC | 4 cut(s) | 106, 505, 777, 798 |
| AclWI | GGATC | 1 cut(s) | 293 |
| AcyI | GRCGYC | 2 cut(s) | 427, 855 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 817, 821, 883, 989 |
| AgsI | TTSAA | 3 cut(s) | 121, 622, 998 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 3 cut(s) | 304, 314, 626 |
| AluI | AGCT | 3 cut(s) | 304, 314, 626 |
| Alw26I | GTCTC | 1 cut(s) | 241 |
| AlwI | GGATC | 1 cut(s) | 293 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 779 |
| Ama87I | CYCGRG | 1 cut(s) | 723 |
| Aor13HI | TCCGGA | 1 cut(s) | 391 |
| ApeKI | GCWGC | 3 cut(s) | 275, 779, 782 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 387 |
| AspA2I | CCTAGG | 1 cut(s) | 815 |
| AspLEI | GCGC | 2 cut(s) | 413, 429 |
| AspS9I | GGNCC | 1 cut(s) | 1001 |
| AsuHPI | GGTGA | 1 cut(s) | 925 |
| AvaI | CYCGRG | 1 cut(s) | 723 |
| AvaII | GGWCC | 1 cut(s) | 1001 |
| AvrII | CCTAGG | 1 cut(s) | 815 |
| BanI | GGYRCC | 2 cut(s) | 426, 584 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| BbvI | GCAGC | 3 cut(s) | 262, 766, 769 |
| BccI | CCATC | 5 cut(s) | 87, 241, 612, 845, 867 |
| BceAI | ACGGC | 1 cut(s) | 785 |
| BciVI | GTATCC | 1 cut(s) | 448 |
| BcoDI | GTCTC | 1 cut(s) | 241 |
| BfaI | CTAG | 2 cut(s) | 83, 816 |
| BfmI | CTRYAG | 1 cut(s) | 276 |
| BfoI | RGCGCY | 1 cut(s) | 430 |
| BfuI | GTATCC | 1 cut(s) | 448 |
| BglII | AGATCT | 1 cut(s) | 895 |
| BisI | GCNGC | 5 cut(s) | 276, 777, 780, 783, 798 |
| BlnI | CCTAGG | 1 cut(s) | 815 |
| BlsI | GCNGC | 5 cut(s) | 277, 778, 781, 784, 799 |
| Bme18I | GGWCC | 1 cut(s) | 1001 |
| BmeT110I | CYCGRG | 1 cut(s) | 723 |
| BmgT120I | GGNCC | 1 cut(s) | 1001 |
| BmiI | GGNNCC | 2 cut(s) | 428, 586 |
| BmsI | GCATC | 4 cut(s) | 187, 262, 570, 832 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| BpuEI | CTTGAG | 1 cut(s) | 884 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaBI | GATNNNNATC | 1 cut(s) | 663 |
| BsaHI | GRCGYC | 2 cut(s) | 427, 855 |
| BsaJI | CCNNGG | 4 cut(s) | 372, 815, 846, 882 |
| BsaWI | WCCGGW | 1 cut(s) | 391 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 817, 821, 883, 989 |
| Bse1I | ACTGG | 1 cut(s) | 174 |
| Bse3DI | GCAATG | 2 cut(s) | 61, 888 |
| Bse8I | GATNNNNATC | 1 cut(s) | 663 |
| BseAI | TCCGGA | 1 cut(s) | 391 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 4 cut(s) | 372, 815, 846, 882 |
| BseGI | GGATG | 4 cut(s) | 342, 368, 664, 856 |
| BseJI | GATNNNNATC | 1 cut(s) | 663 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 817, 821, 883, 989 |
| BseMI | GCAATG | 2 cut(s) | 61, 888 |
| BseMII | CTCAG | 1 cut(s) | 636 |
| BseNI | ACTGG | 1 cut(s) | 174 |
| BseRI | GAGGAG | 1 cut(s) | 618 |
| BseXI | GCAGC | 3 cut(s) | 262, 766, 769 |
| Bsh1236I | CGCG | 1 cut(s) | 411 |
| BshNI | GGYRCC | 2 cut(s) | 426, 584 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKCI | CYCGRG | 1 cut(s) | 723 |
| BsiSI | CCGG | 1 cut(s) | 392 |
| BslFI | GGGAC | 2 cut(s) | 815, 927 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 817, 821, 883, 989 |
| BsmAI | GTCTC | 1 cut(s) | 241 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| BsmFI | GGGAC | 2 cut(s) | 815, 927 |
| BsoBI | CYCGRG | 1 cut(s) | 723 |
| Bsp13I | TCCGGA | 1 cut(s) | 391 |
| Bsp143I | GATC | 4 cut(s) | 189, 285, 684, 895 |
| Bsp19I | CCATGG | 1 cut(s) | 846 |
| BspACI | CCGC | 4 cut(s) | 106, 505, 777, 798 |
| BspCNI | CTCAG | 1 cut(s) | 637 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspEI | TCCGGA | 1 cut(s) | 391 |
| BspFNI | CGCG | 1 cut(s) | 411 |
| BspHI | TCATGA | 2 cut(s) | 298, 943 |
| BspLI | GGNNCC | 2 cut(s) | 428, 586 |
| BspMAI | CTGCAG | 1 cut(s) | 280 |
| BspPI | GGATC | 1 cut(s) | 293 |
| BspT107I | GGYRCC | 2 cut(s) | 426, 584 |
| BsrDI | GCAATG | 2 cut(s) | 61, 888 |
| BsrI | ACTGG | 1 cut(s) | 174 |
| BssECI | CCNNGG | 4 cut(s) | 372, 815, 846, 882 |
| BssMI | GATC | 4 cut(s) | 189, 285, 684, 895 |
| BssNI | GRCGYC | 2 cut(s) | 427, 855 |
| BssT1I | CCWWGG | 3 cut(s) | 815, 846, 882 |
| Bst4CI | ACNGT | 1 cut(s) | 829 |
| Bst6I | CTCTTC | 1 cut(s) | 526 |
| BstACI | GRCGYC | 2 cut(s) | 427, 855 |
| BstC8I | GCNNGC | 1 cut(s) | 823 |
| BstDEI | CTNAG | 6 cut(s) | 152, 255, 417, 449, 597, 645 |
| BstDSI | CCRYGG | 2 cut(s) | 372, 846 |
| BstEII | GGTNACC | 1 cut(s) | 500 |
| BstF5I | GGATG | 4 cut(s) | 342, 368, 664, 856 |
| BstFNI | CGCG | 1 cut(s) | 411 |
| BstH2I | RGCGCY | 1 cut(s) | 430 |
| BstHHI | GCGC | 2 cut(s) | 413, 429 |
| BstKTI | GATC | 4 cut(s) | 192, 288, 687, 898 |
| BstMAI | GTCTC | 1 cut(s) | 241 |
| BstMBI | GATC | 4 cut(s) | 189, 285, 684, 895 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 433, 782 |
| BstPI | GGTNACC | 1 cut(s) | 500 |
| BstSFI | CTRYAG | 1 cut(s) | 276 |
| BstUI | CGCG | 1 cut(s) | 411 |
| BstV1I | GCAGC | 3 cut(s) | 262, 766, 769 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstX2I | RGATCY | 1 cut(s) | 895 |
| BstYI | RGATCY | 1 cut(s) | 895 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuI | GTATCC | 1 cut(s) | 448 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 2 cut(s) | 372, 846 |
| BtgZI | GCGATG | 2 cut(s) | 215, 547 |
| BtsCI | GGATG | 4 cut(s) | 342, 368, 664, 856 |
| BtsI | GCAGTG | 1 cut(s) | 792 |
| BtsIMutI | CAGTG | 2 cut(s) | 324, 792 |
| Cac8I | GCNNGC | 1 cut(s) | 823 |
| CaiI | CAGNNNCTG | 1 cut(s) | 779 |
| CciI | TCATGA | 2 cut(s) | 298, 943 |
| CfoI | GCGC | 2 cut(s) | 413, 429 |
| Cfr13I | GGNCC | 1 cut(s) | 1001 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CseI | GACGC | 1 cut(s) | 844 |
| CviJI | RGCY | 9 cut(s) | 102, 304, 314, 603, 626, 776, 814, 821, 993 |
| CviKI_1 | RGCY | 9 cut(s) | 102, 304, 314, 603, 626, 776, 814, 821, 993 |
| DdeI | CTNAG | 6 cut(s) | 152, 255, 417, 449, 597, 645 |
| DinI | GGCGCC | 1 cut(s) | 428 |
| DpnI | GATC | 4 cut(s) | 191, 287, 686, 897 |
| DpnII | GATC | 4 cut(s) | 189, 285, 684, 895 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 471 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 471 |
| Eam1104I | CTCTTC | 1 cut(s) | 526 |
| EarI | CTCTTC | 1 cut(s) | 526 |
| Eco130I | CCWWGG | 3 cut(s) | 815, 846, 882 |
| Eco47I | GGWCC | 1 cut(s) | 1001 |
| Eco88I | CYCGRG | 1 cut(s) | 723 |
| Eco91I | GGTNACC | 1 cut(s) | 500 |
| EcoO65I | GGTNACC | 1 cut(s) | 500 |
| EcoT14I | CCWWGG | 3 cut(s) | 815, 846, 882 |
| EgeI | GGCGCC | 1 cut(s) | 428 |
| EheI | GGCGCC | 1 cut(s) | 428 |
| ErhI | CCWWGG | 3 cut(s) | 815, 846, 882 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 977, 1009 |
| FaqI | GGGAC | 2 cut(s) | 815, 927 |
| FblI | GTMKAC | 1 cut(s) | 691 |
| Fnu4HI | GCNGC | 5 cut(s) | 276, 777, 780, 783, 798 |
| FokI | GGATG | 4 cut(s) | 329, 355, 651, 863 |
| Fsp4HI | GCNGC | 5 cut(s) | 276, 777, 780, 783, 798 |
| FspBI | CTAG | 2 cut(s) | 83, 816 |
| GlaI | GCGC | 2 cut(s) | 412, 428 |
| GluI | GCNGC | 5 cut(s) | 276, 777, 780, 783, 798 |
| HaeII | RGCGCY | 1 cut(s) | 430 |
| HapII | CCGG | 1 cut(s) | 392 |
| HgaI | GACGC | 1 cut(s) | 844 |
| HhaI | GCGC | 2 cut(s) | 413, 429 |
| Hin1I | GRCGYC | 2 cut(s) | 427, 855 |
| Hin6I | GCGC | 2 cut(s) | 411, 427 |
| HinP1I | GCGC | 2 cut(s) | 411, 427 |
| HincII | GTYRAC | 1 cut(s) | 539 |
| HindII | GTYRAC | 1 cut(s) | 539 |
| HinfI | GANTC | 7 cut(s) | 65, 217, 267, 395, 641, 742, 754 |
| HpaII | CCGG | 1 cut(s) | 392 |
| HphI | GGTGA | 1 cut(s) | 925 |
| Hpy166II | GTNNAC | 5 cut(s) | 539, 692, 805, 925, 956 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 646 |
| Hpy188III | TCNNGA | 9 cut(s) | 77, 131, 299, 392, 462, 674, 723, 901, 944 |
| Hpy8I | GTNNAC | 5 cut(s) | 539, 692, 805, 925, 956 |
| HpyAV | CCTTC | 3 cut(s) | 417, 491, 992 |
| HpyCH4III | ACNGT | 1 cut(s) | 829 |
| HpyCH4IV | ACGT | 2 cut(s) | 466, 541 |
| HpyCH4V | TGCA | 3 cut(s) | 242, 278, 893 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 433, 782 |
| HpyF3I | CTNAG | 6 cut(s) | 152, 255, 417, 449, 597, 645 |
| HpySE526I | ACGT | 2 cut(s) | 466, 541 |
| Hsp92I | GRCGYC | 2 cut(s) | 427, 855 |
| HspAI | GCGC | 2 cut(s) | 411, 427 |
| KasI | GGCGCC | 1 cut(s) | 426 |
| Kpn2I | TCCGGA | 1 cut(s) | 391 |
| Kzo9I | GATC | 4 cut(s) | 189, 285, 684, 895 |
| LmnI | GCTCC | 2 cut(s) | 311, 631 |
| Lsp1109I | GCAGC | 3 cut(s) | 262, 766, 769 |
| LweI | GCATC | 4 cut(s) | 187, 262, 570, 832 |
| MaeI | CTAG | 2 cut(s) | 83, 816 |
| MaeII | ACGT | 2 cut(s) | 466, 541 |
| MaeIII | GTNAC | 2 cut(s) | 322, 500 |
| MalI | GATC | 4 cut(s) | 191, 287, 686, 897 |
| MboI | GATC | 4 cut(s) | 189, 285, 684, 895 |
| MboII | GAAGA | 7 cut(s) | 20, 23, 33, 53, 226, 364, 543 |
| MflI | RGATCY | 1 cut(s) | 895 |
| MluCI | AATT | 5 cut(s) | 173, 361, 400, 716, 972 |
| Mly113I | GGCGCC | 1 cut(s) | 427 |
| MlyI | GAGTC | 3 cut(s) | 59, 211, 650 |
| MnlI | CCTC | 8 cut(s) | 113, 527, 547, 551, 577, 639, 796, 983 |
| MroI | TCCGGA | 1 cut(s) | 391 |
| MroXI | GAANNNNTTC | 1 cut(s) | 387 |
| MseI | TTAA | 1 cut(s) | 159 |
| MslI | CAYNNNNRTG | 4 cut(s) | 347, 579, 609, 948 |
| MspA1I | CMGCKG | 1 cut(s) | 779 |
| MspI | CCGG | 1 cut(s) | 392 |
| MvnI | CGCG | 1 cut(s) | 411 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 433, 782 |
| NarI | GGCGCC | 1 cut(s) | 427 |
| NcoI | CCATGG | 1 cut(s) | 846 |
| NdeII | GATC | 4 cut(s) | 189, 285, 684, 895 |
| NlaIV | GGNNCC | 2 cut(s) | 428, 586 |
| NmuCI | GTSAC | 1 cut(s) | 322 |
| PaeR7I | CTCGAG | 1 cut(s) | 723 |
| PagI | TCATGA | 2 cut(s) | 298, 943 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 730 |
| PdmI | GAANNNNTTC | 1 cut(s) | 387 |
| PfeI | GAWTC | 4 cut(s) | 267, 395, 742, 754 |
| PkrI | GCNGC | 5 cut(s) | 277, 778, 781, 784, 799 |
| PleI | GAGTC | 3 cut(s) | 59, 211, 649 |
| PluTI | GGCGCC | 1 cut(s) | 430 |
| PpsI | GAGTC | 3 cut(s) | 59, 211, 649 |
| PspEI | GGTNACC | 1 cut(s) | 500 |
| PspN4I | GGNNCC | 2 cut(s) | 428, 586 |
| PspPI | GGNCC | 1 cut(s) | 1001 |
| PstI | CTGCAG | 1 cut(s) | 280 |
| PstNI | CAGNNNCTG | 1 cut(s) | 779 |
| PsuI | RGATCY | 1 cut(s) | 895 |
| RseI | CAYNNNNRTG | 4 cut(s) | 347, 579, 609, 948 |
| SaqAI | TTAA | 1 cut(s) | 159 |
| SatI | GCNGC | 5 cut(s) | 276, 777, 780, 783, 798 |
| Sau3AI | GATC | 4 cut(s) | 189, 285, 684, 895 |
| Sau96I | GGNCC | 1 cut(s) | 1001 |
| SchI | GAGTC | 3 cut(s) | 59, 211, 650 |
| SetI | ASST | 9 cut(s) | 84, 306, 316, 469, 502, 538, 544, 628, 1003 |
| SfaNI | GCATC | 4 cut(s) | 187, 262, 570, 832 |
| SfcI | CTRYAG | 1 cut(s) | 276 |
| SfoI | GGCGCC | 1 cut(s) | 428 |
| Sfr274I | CTCGAG | 1 cut(s) | 723 |
| SinI | GGWCC | 1 cut(s) | 1001 |
| SlaI | CTCGAG | 1 cut(s) | 723 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 347, 579, 609, 948 |
| SmlI | CTYRAG | 2 cut(s) | 723, 899 |
| SmoI | CTYRAG | 2 cut(s) | 723, 899 |
| Sse9I | AATT | 5 cut(s) | 173, 361, 400, 716, 972 |
| SsiI | CCGC | 4 cut(s) | 106, 505, 777, 798 |
| SspDI | GGCGCC | 1 cut(s) | 426 |
| SspI | AATATT | 1 cut(s) | 48 |
| SspMI | CTAG | 2 cut(s) | 83, 816 |
| StyI | CCWWGG | 3 cut(s) | 815, 846, 882 |
| TaaI | ACNGT | 1 cut(s) | 829 |
| TaiI | ACGT | 2 cut(s) | 469, 544 |
| TaqI | TCGA | 6 cut(s) | 39, 265, 270, 365, 607, 724 |
| TasI | AATT | 5 cut(s) | 173, 361, 400, 716, 972 |
| TauI | GCSGC | 2 cut(s) | 779, 800 |
| TfiI | GAWTC | 4 cut(s) | 267, 395, 742, 754 |
| Tru1I | TTAA | 1 cut(s) | 159 |
| Tru9I | TTAA | 1 cut(s) | 159 |
| TscAI | CASTG | 2 cut(s) | 331, 799 |
| TseFI | GTSAC | 1 cut(s) | 322 |
| TseI | GCWGC | 3 cut(s) | 275, 779, 782 |
| Tsp45I | GTSAC | 1 cut(s) | 322 |
| TspDTI | ATGAA | 7 cut(s) | 17, 21, 287, 332, 755, 919, 932 |
| TspGWI | ACGGA | 2 cut(s) | 298, 361 |
| TspRI | CASTG | 2 cut(s) | 331, 799 |
| VpaK11BI | GGWCC | 1 cut(s) | 1001 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 818 |
| XhoI | CTCGAG | 1 cut(s) | 723 |
| XmaJI | CCTAGG | 1 cut(s) | 815 |
| XmiI | GTMKAC | 1 cut(s) | 691 |
| XmnI | GAANNNNTTC | 1 cut(s) | 387 |
| XspI | CTAG | 2 cut(s) | 83, 816 |