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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 344, 425 |
| AciI | CCGC | 2 cut(s) | 79, 348 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 370, 374 |
| AgsI | TTSAA | 1 cut(s) | 461 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 129, 430 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 2 cut(s) | 155, 161 |
| AluI | AGCT | 2 cut(s) | 155, 161 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 482 |
| AspA2I | CCTAGG | 1 cut(s) | 368 |
| AspLEI | GCGC | 1 cut(s) | 380 |
| AsuHPI | GGTGA | 2 cut(s) | 439, 446 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvrII | CCTAGG | 1 cut(s) | 368 |
| BanI | GGYRCC | 2 cut(s) | 344, 425 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| BccI | CCATC | 4 cut(s) | 92, 215, 416, 420 |
| BciT130I | CCWGG | 2 cut(s) | 131, 432 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 4 cut(s) | 126, 273, 338, 369 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BlnI | CCTAGG | 1 cut(s) | 368 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 432 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 2 cut(s) | 346, 427 |
| BmrFI | CCNGG | 2 cut(s) | 131, 432 |
| BmsI | GCATC | 2 cut(s) | 94, 465 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 1 cut(s) | 479 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 3 cut(s) | 368, 399, 430 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 370, 374 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| Bse3DI | GCAATG | 1 cut(s) | 316 |
| BseBI | CCWGG | 2 cut(s) | 131, 432 |
| BseDI | CCNNGG | 3 cut(s) | 368, 399, 430 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 370, 374 |
| BseMI | GCAATG | 1 cut(s) | 316 |
| BseMII | CTCAG | 1 cut(s) | 493 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BshFI | GGCC | 1 cut(s) | 484 |
| BshNI | GGYRCC | 2 cut(s) | 344, 425 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslFI | GGGAC | 1 cut(s) | 368 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 370, 374 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsmFI | GGGAC | 1 cut(s) | 368 |
| BsnI | GGCC | 1 cut(s) | 484 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp19I | CCATGG | 1 cut(s) | 399 |
| BspACI | CCGC | 2 cut(s) | 79, 348 |
| BspANI | GGCC | 1 cut(s) | 484 |
| BspCNI | CTCAG | 1 cut(s) | 492 |
| BspLI | GGNNCC | 2 cut(s) | 346, 427 |
| BspT107I | GGYRCC | 2 cut(s) | 344, 425 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrDI | GCAATG | 1 cut(s) | 316 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssECI | CCNNGG | 3 cut(s) | 368, 399, 430 |
| BssT1I | CCWWGG | 2 cut(s) | 368, 399 |
| Bst2UI | CCWGG | 2 cut(s) | 131, 432 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 479 |
| BstDSI | CCRYGG | 1 cut(s) | 399 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstHHI | GCGC | 1 cut(s) | 380 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 514 |
| BstNI | CCWGG | 2 cut(s) | 131, 432 |
| BstSCI | CCNGG | 2 cut(s) | 129, 430 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 484 |
| BtgI | CCRYGG | 1 cut(s) | 399 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CfoI | GCGC | 1 cut(s) | 380 |
| CseI | GACGC | 1 cut(s) | 397 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 1 cut(s) | 400 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 184, 479 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco130I | CCWWGG | 2 cut(s) | 368, 399 |
| Eco147I | AGGCCT | 1 cut(s) | 484 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRII | CCWGG | 2 cut(s) | 129, 430 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 2 cut(s) | 368, 399 |
| ErhI | CCWWGG | 2 cut(s) | 368, 399 |
| FaeI | CATG | 1 cut(s) | 403 |
| FaiI | YATR | 6 cut(s) | 32, 228, 230, 257, 393, 401 |
| FaqI | GGGAC | 1 cut(s) | 368 |
| FatI | CATG | 1 cut(s) | 399 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| FspBI | CTAG | 4 cut(s) | 126, 273, 338, 369 |
| GlaI | GCGC | 1 cut(s) | 379 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 484 |
| HgaI | GACGC | 1 cut(s) | 397 |
| HhaI | GCGC | 1 cut(s) | 380 |
| Hin1II | CATG | 1 cut(s) | 403 |
| Hin6I | GCGC | 1 cut(s) | 378 |
| HinP1I | GCGC | 1 cut(s) | 378 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 7 cut(s) | 47, 102, 115, 122, 220, 236, 320 |
| HphI | GGTGA | 2 cut(s) | 439, 446 |
| Hpy166II | GTNNAC | 1 cut(s) | 358 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 474 |
| Hpy188III | TCNNGA | 3 cut(s) | 71, 119, 332 |
| Hpy8I | GTNNAC | 1 cut(s) | 358 |
| HpyAV | CCTTC | 2 cut(s) | 270, 335 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 1 cut(s) | 443 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 514 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 479 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92II | CATG | 1 cut(s) | 403 |
| HspAI | GCGC | 1 cut(s) | 378 |
| LmnI | GCTCC | 1 cut(s) | 246 |
| LweI | GCATC | 2 cut(s) | 94, 465 |
| MaeI | CTAG | 4 cut(s) | 126, 273, 338, 369 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 2 cut(s) | 5, 317 |
| MboII | GAAGA | 4 cut(s) | 179, 275, 278, 308 |
| MluCI | AATT | 2 cut(s) | 17, 553 |
| MlyI | GAGTC | 4 cut(s) | 41, 131, 214, 314 |
| MnlI | CCTC | 3 cut(s) | 181, 361, 528 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 417, 420 |
| MspR9I | CCNGG | 2 cut(s) | 131, 432 |
| MvaI | CCWGG | 2 cut(s) | 131, 432 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 514 |
| NcoI | CCATGG | 1 cut(s) | 399 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NlaIII | CATG | 1 cut(s) | 403 |
| NlaIV | GGNNCC | 2 cut(s) | 346, 427 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PceI | AGGCCT | 1 cut(s) | 484 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 236 |
| PleI | GAGTC | 4 cut(s) | 41, 130, 214, 314 |
| PpsI | GAGTC | 4 cut(s) | 41, 130, 214, 314 |
| Psp6I | CCWGG | 2 cut(s) | 129, 430 |
| PspGI | CCWGG | 2 cut(s) | 129, 430 |
| PspN4I | GGNNCC | 2 cut(s) | 346, 427 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 417, 420 |
| SchI | GAGTC | 4 cut(s) | 41, 131, 214, 314 |
| ScrFI | CCNGG | 2 cut(s) | 131, 432 |
| SetI | ASST | 7 cut(s) | 12, 65, 138, 157, 163, 339, 436 |
| SfaNI | GCATC | 2 cut(s) | 94, 465 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 417, 420 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 2 cut(s) | 17, 553 |
| SseBI | AGGCCT | 1 cut(s) | 484 |
| SsiI | CCGC | 2 cut(s) | 79, 348 |
| SspMI | CTAG | 4 cut(s) | 126, 273, 338, 369 |
| StuI | AGGCCT | 1 cut(s) | 484 |
| StyD4I | CCNGG | 2 cut(s) | 129, 430 |
| StyI | CCWWGG | 2 cut(s) | 368, 399 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 2 cut(s) | 120, 294 |
| TasI | AATT | 2 cut(s) | 17, 553 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 236 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 2 cut(s) | 272, 276 |
| TspGWI | ACGGA | 1 cut(s) | 305 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 371, 419 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 1 cut(s) | 368 |
| XspI | CTAG | 4 cut(s) | 126, 273, 338, 369 |