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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 411, 630 |
| AccB1I | GGYRCC | 1 cut(s) | 743 |
| AccII | CGCG | 2 cut(s) | 351, 570 |
| AciI | CCGC | 2 cut(s) | 145, 664 |
| AclWI | GGATC | 2 cut(s) | 303, 522 |
| AcoI | YGGCCR | 1 cut(s) | 730 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcyI | GRCGYC | 1 cut(s) | 744 |
| AdeI | CACNNNGTG | 1 cut(s) | 925 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 579, 580, 846 |
| AgsI | TTSAA | 2 cut(s) | 160, 781 |
| AluBI | AGCT | 6 cut(s) | 244, 254, 463, 473, 866, 917 |
| AluI | AGCT | 6 cut(s) | 244, 254, 463, 473, 866, 917 |
| Alw21I | GWGCWC | 1 cut(s) | 868 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| AlwI | GGATC | 2 cut(s) | 303, 522 |
| AoxI | GGCC | 1 cut(s) | 730 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 6 cut(s) | 353, 369, 572, 588, 746, 787 |
| AspS9I | GGNCC | 2 cut(s) | 404, 623 |
| AvaII | GGWCC | 2 cut(s) | 404, 623 |
| BaeGI | GKGCMC | 1 cut(s) | 853 |
| BalI | TGGCCA | 1 cut(s) | 732 |
| BanI | GGYRCC | 1 cut(s) | 743 |
| BanII | GRGCYC | 1 cut(s) | 868 |
| BauI | CACGAG | 1 cut(s) | 867 |
| BbsI | GAAGAC | 1 cut(s) | 57 |
| Bbv12I | GWGCWC | 1 cut(s) | 868 |
| BccI | CCATC | 2 cut(s) | 126, 771 |
| BciVI | GTATCC | 2 cut(s) | 388, 847 |
| BclI | TGATCA | 1 cut(s) | 805 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BfoI | RGCGCY | 4 cut(s) | 370, 589, 747, 788 |
| BfuI | GTATCC | 2 cut(s) | 388, 847 |
| Bme18I | GGWCC | 2 cut(s) | 404, 623 |
| BmgT120I | GGNCC | 2 cut(s) | 404, 623 |
| BmiI | GGNNCC | 1 cut(s) | 745 |
| BmsI | GCATC | 1 cut(s) | 707 |
| BpiI | GAAGAC | 1 cut(s) | 57 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BsaHI | GRCGYC | 1 cut(s) | 744 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 2 cut(s) | 312, 531 |
| BsaWI | WCCGGW | 1 cut(s) | 839 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 579, 580, 846 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseDI | CCNNGG | 2 cut(s) | 312, 531 |
| BseGI | GGATG | 2 cut(s) | 22, 722 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 579, 580, 846 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 1 cut(s) | 853 |
| Bsh1236I | CGCG | 2 cut(s) | 351, 570 |
| BshFI | GGCC | 1 cut(s) | 732 |
| BshNI | GGYRCC | 1 cut(s) | 743 |
| BsiHKAI | GWGCWC | 1 cut(s) | 868 |
| BsiSI | CCGG | 1 cut(s) | 840 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 579, 580, 846 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| BsnI | GGCC | 1 cut(s) | 732 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 2 cut(s) | 853, 868 |
| Bsp143I | GATC | 5 cut(s) | 308, 527, 805, 937, 949 |
| BspACI | CCGC | 2 cut(s) | 145, 664 |
| BspANI | GGCC | 1 cut(s) | 732 |
| BspFNI | CGCG | 2 cut(s) | 351, 570 |
| BspHI | TCATGA | 2 cut(s) | 238, 457 |
| BspLI | GGNNCC | 1 cut(s) | 745 |
| BspPI | GGATC | 2 cut(s) | 303, 522 |
| BspT107I | GGYRCC | 1 cut(s) | 743 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 2 cut(s) | 312, 531 |
| BssMI | GATC | 5 cut(s) | 308, 527, 805, 937, 949 |
| BssNI | GRCGYC | 1 cut(s) | 744 |
| BssSI | CACGAG | 1 cut(s) | 867 |
| Bst2BI | CACGAG | 1 cut(s) | 867 |
| Bst4CI | ACNGT | 1 cut(s) | 776 |
| Bst6I | CTCTTC | 1 cut(s) | 685 |
| BstACI | GRCGYC | 1 cut(s) | 744 |
| BstDEI | CTNAG | 5 cut(s) | 357, 389, 576, 608, 756 |
| BstDSI | CCRYGG | 2 cut(s) | 312, 531 |
| BstEII | GGTNACC | 1 cut(s) | 659 |
| BstF5I | GGATG | 2 cut(s) | 22, 722 |
| BstFNI | CGCG | 2 cut(s) | 351, 570 |
| BstH2I | RGCGCY | 4 cut(s) | 370, 589, 747, 788 |
| BstHHI | GCGC | 6 cut(s) | 353, 369, 572, 588, 746, 787 |
| BstKTI | GATC | 5 cut(s) | 311, 530, 808, 940, 952 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstMBI | GATC | 5 cut(s) | 308, 527, 805, 937, 949 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 373, 592, 914 |
| BstPI | GGTNACC | 1 cut(s) | 659 |
| BstSLI | GKGCMC | 1 cut(s) | 853 |
| BstUI | CGCG | 2 cut(s) | 351, 570 |
| BstV2I | GAAGAC | 1 cut(s) | 57 |
| BstX2I | RGATCY | 2 cut(s) | 308, 527 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 740 |
| BstYI | RGATCY | 2 cut(s) | 308, 527 |
| BsuI | GTATCC | 2 cut(s) | 388, 847 |
| BsuRI | GGCC | 1 cut(s) | 732 |
| BtgI | CCRYGG | 2 cut(s) | 312, 531 |
| BtsCI | GGATG | 2 cut(s) | 22, 722 |
| CciI | TCATGA | 2 cut(s) | 238, 457 |
| CfoI | GCGC | 6 cut(s) | 353, 369, 572, 588, 746, 787 |
| Cfr13I | GGNCC | 2 cut(s) | 404, 623 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 5 cut(s) | 239, 275, 458, 494, 734 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 5 cut(s) | 357, 389, 576, 608, 756 |
| DinI | GGCGCC | 1 cut(s) | 745 |
| DpnI | GATC | 5 cut(s) | 310, 529, 807, 939, 951 |
| DpnII | GATC | 5 cut(s) | 308, 527, 805, 937, 949 |
| DraIII | CACNNNGTG | 1 cut(s) | 925 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 411, 630 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 411, 630 |
| EaeI | YGGCCR | 1 cut(s) | 730 |
| Eam1104I | CTCTTC | 1 cut(s) | 685 |
| EarI | CTCTTC | 1 cut(s) | 685 |
| Ecl136II | GAGCTC | 1 cut(s) | 866 |
| Eco24I | GRGCYC | 1 cut(s) | 868 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 2 cut(s) | 404, 623 |
| Eco53kI | GAGCTC | 1 cut(s) | 866 |
| Eco91I | GGTNACC | 1 cut(s) | 659 |
| EcoICRI | GAGCTC | 1 cut(s) | 866 |
| EcoO65I | GGTNACC | 1 cut(s) | 659 |
| EcoT38I | GRGCYC | 1 cut(s) | 868 |
| EgeI | GGCGCC | 1 cut(s) | 745 |
| EheI | GGCGCC | 1 cut(s) | 745 |
| FaeI | CATG | 5 cut(s) | 242, 278, 461, 497, 737 |
| FatI | CATG | 5 cut(s) | 238, 274, 457, 493, 733 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FbaI | TGATCA | 1 cut(s) | 805 |
| FokI | GGATG | 2 cut(s) | 29, 729 |
| FriOI | GRGCYC | 1 cut(s) | 868 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GlaI | GCGC | 6 cut(s) | 352, 368, 571, 587, 745, 786 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 4 cut(s) | 370, 589, 747, 788 |
| HaeIII | GGCC | 1 cut(s) | 732 |
| HapII | CCGG | 1 cut(s) | 840 |
| HhaI | GCGC | 6 cut(s) | 353, 369, 572, 588, 746, 787 |
| Hin1I | GRCGYC | 1 cut(s) | 744 |
| Hin1II | CATG | 5 cut(s) | 242, 278, 461, 497, 737 |
| Hin6I | GCGC | 6 cut(s) | 351, 367, 570, 586, 744, 785 |
| HinP1I | GCGC | 6 cut(s) | 351, 367, 570, 586, 744, 785 |
| HinfI | GANTC | 3 cut(s) | 4, 20, 104 |
| HpaII | CCGG | 1 cut(s) | 840 |
| Hpy166II | GTNNAC | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 333, 552 |
| Hpy8I | GTNNAC | 1 cut(s) | 221 |
| HpyAV | CCTTC | 3 cut(s) | 54, 431, 650 |
| HpyCH4III | ACNGT | 1 cut(s) | 776 |
| HpyCH4IV | ACGT | 1 cut(s) | 96 |
| HpyCH4V | TGCA | 1 cut(s) | 720 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 373, 592, 914 |
| HpyF3I | CTNAG | 5 cut(s) | 357, 389, 576, 608, 756 |
| HpySE526I | ACGT | 1 cut(s) | 96 |
| Hsp92I | GRCGYC | 1 cut(s) | 744 |
| Hsp92II | CATG | 5 cut(s) | 242, 278, 461, 497, 737 |
| HspAI | GCGC | 6 cut(s) | 351, 367, 570, 586, 744, 785 |
| KasI | GGCGCC | 1 cut(s) | 743 |
| Ksp22I | TGATCA | 1 cut(s) | 805 |
| Kzo9I | GATC | 5 cut(s) | 308, 527, 805, 937, 949 |
| LmnI | GCTCC | 4 cut(s) | 30, 251, 470, 583 |
| LpnPI | CCDG | 7 cut(s) | 41, 70, 122, 387, 606, 714, 853 |
| LweI | GCATC | 1 cut(s) | 707 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeII | ACGT | 1 cut(s) | 96 |
| MaeIII | GTNAC | 3 cut(s) | 101, 659, 880 |
| MalI | GATC | 5 cut(s) | 310, 529, 807, 939, 951 |
| MboI | GATC | 5 cut(s) | 308, 527, 805, 937, 949 |
| MboII | GAAGA | 5 cut(s) | 62, 702, 884, 947, 956 |
| MflI | RGATCY | 2 cut(s) | 308, 527 |
| MhlI | GDGCHC | 2 cut(s) | 853, 868 |
| MlsI | TGGCCA | 1 cut(s) | 732 |
| MluCI | AATT | 6 cut(s) | 212, 301, 340, 520, 559, 876 |
| MluNI | TGGCCA | 1 cut(s) | 732 |
| Mly113I | GGCGCC | 1 cut(s) | 744 |
| MlyI | GAGTC | 1 cut(s) | 98 |
| MmeI | TCCRAC | 2 cut(s) | 229, 448 |
| MnlI | CCTC | 7 cut(s) | 152, 573, 686, 706, 736, 798, 895 |
| Mox20I | TGGCCA | 1 cut(s) | 732 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 732 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 738, 768 |
| Msp20I | TGGCCA | 1 cut(s) | 732 |
| MspI | CCGG | 1 cut(s) | 840 |
| MvnI | CGCG | 2 cut(s) | 351, 570 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 373, 592, 914 |
| NarI | GGCGCC | 1 cut(s) | 744 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 5 cut(s) | 308, 527, 805, 937, 949 |
| NlaIII | CATG | 5 cut(s) | 242, 278, 461, 497, 737 |
| NlaIV | GGNNCC | 1 cut(s) | 745 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| PagI | TCATGA | 2 cut(s) | 238, 457 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 20 |
| PleI | GAGTC | 1 cut(s) | 98 |
| PluTI | GGCGCC | 1 cut(s) | 747 |
| PpsI | GAGTC | 1 cut(s) | 98 |
| Psp124BI | GAGCTC | 1 cut(s) | 868 |
| PspEI | GGTNACC | 1 cut(s) | 659 |
| PspN4I | GGNNCC | 1 cut(s) | 745 |
| PspPI | GGNCC | 2 cut(s) | 404, 623 |
| PsuI | RGATCY | 2 cut(s) | 308, 527 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 738, 768 |
| SacI | GAGCTC | 1 cut(s) | 868 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| Sau3AI | GATC | 5 cut(s) | 308, 527, 805, 937, 949 |
| Sau96I | GGNCC | 2 cut(s) | 404, 623 |
| SchI | GAGTC | 1 cut(s) | 98 |
| SduI | GDGCHC | 2 cut(s) | 853, 868 |
| SfaNI | GCATC | 1 cut(s) | 707 |
| SfoI | GGCGCC | 1 cut(s) | 745 |
| SinI | GGWCC | 2 cut(s) | 404, 623 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 738, 768 |
| Sse9I | AATT | 6 cut(s) | 212, 301, 340, 520, 559, 876 |
| SsiI | CCGC | 2 cut(s) | 145, 664 |
| SspDI | GGCGCC | 1 cut(s) | 743 |
| SspMI | CTAG | 1 cut(s) | 122 |
| SstI | GAGCTC | 1 cut(s) | 868 |
| TaaI | ACNGT | 1 cut(s) | 776 |
| TaiI | ACGT | 1 cut(s) | 99 |
| TaqI | TCGA | 2 cut(s) | 524, 826 |
| TasI | AATT | 6 cut(s) | 212, 301, 340, 520, 559, 876 |
| TfiI | GAWTC | 1 cut(s) | 20 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 5 cut(s) | 56, 227, 272, 446, 491 |
| TspGWI | ACGGA | 3 cut(s) | 89, 301, 520 |
| VpaK11BI | GGWCC | 2 cut(s) | 404, 623 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 1 cut(s) | 122 |