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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 333, 378 |
| AccB1I | GGYRCC | 2 cut(s) | 6, 575 |
| AccII | CGCG | 1 cut(s) | 514 |
| AciI | CCGC | 3 cut(s) | 4, 454, 475 |
| AclWI | GGATC | 2 cut(s) | 266, 664 |
| AcuI | CTGAAG | 2 cut(s) | 261, 834 |
| AcvI | CACGTG | 1 cut(s) | 497 |
| AcyI | GRCGYC | 1 cut(s) | 7 |
| AdeI | CACNNNGTG | 1 cut(s) | 500 |
| AfaI | GTAC | 3 cut(s) | 238, 410, 749 |
| AfeI | AGCGCT | 1 cut(s) | 75 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 392, 393, 419, 463, 516 |
| AflIII | ACRYGT | 2 cut(s) | 494, 512 |
| AgsI | TTSAA | 5 cut(s) | 131, 160, 339, 676, 808 |
| AjnI | CCWGG | 1 cut(s) | 462 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 6 cut(s) | 64, 277, 299, 406, 704, 812 |
| AluI | AGCT | 6 cut(s) | 64, 277, 299, 406, 704, 812 |
| Alw21I | GWGCWC | 2 cut(s) | 610, 828 |
| Alw44I | GTGCAC | 2 cut(s) | 606, 824 |
| AlwI | GGATC | 2 cut(s) | 266, 664 |
| Aor51HI | AGCGCT | 1 cut(s) | 75 |
| AoxI | GGCC | 1 cut(s) | 341 |
| ApaLI | GTGCAC | 2 cut(s) | 606, 824 |
| ApeKI | GCWGC | 2 cut(s) | 704, 836 |
| AspA2I | CCTAGG | 1 cut(s) | 587 |
| AspLEI | GCGC | 4 cut(s) | 9, 76, 147, 399 |
| AspS9I | GGNCC | 2 cut(s) | 342, 727 |
| AsuHPI | GGTGA | 1 cut(s) | 784 |
| AvaII | GGWCC | 1 cut(s) | 727 |
| AvrII | CCTAGG | 1 cut(s) | 587 |
| AxyI | CCTNAGG | 1 cut(s) | 731 |
| BaeGI | GKGCMC | 2 cut(s) | 610, 828 |
| BanI | GGYRCC | 2 cut(s) | 6, 575 |
| BanII | GRGCYC | 1 cut(s) | 446 |
| BauI | CACGAG | 2 cut(s) | 262, 320 |
| BbrPI | CACGTG | 1 cut(s) | 497 |
| Bbv12I | GWGCWC | 2 cut(s) | 610, 828 |
| BbvI | GCAGC | 2 cut(s) | 691, 848 |
| BccI | CCATC | 2 cut(s) | 516, 767 |
| BceAI | ACGGC | 1 cut(s) | 528 |
| BciT130I | CCWGG | 1 cut(s) | 464 |
| BciVI | GTATCC | 2 cut(s) | 484, 545 |
| BfaI | CTAG | 4 cut(s) | 77, 540, 588, 701 |
| BfmI | CTRYAG | 1 cut(s) | 294 |
| BfoI | RGCGCY | 2 cut(s) | 10, 77 |
| BfuI | GTATCC | 2 cut(s) | 484, 545 |
| BisI | GCNGC | 3 cut(s) | 5, 705, 837 |
| BlnI | CCTAGG | 1 cut(s) | 587 |
| BlsI | GCNGC | 3 cut(s) | 6, 706, 838 |
| Bme1390I | CCNGG | 1 cut(s) | 464 |
| Bme18I | GGWCC | 1 cut(s) | 727 |
| BmgT120I | GGNCC | 2 cut(s) | 342, 727 |
| BmiI | GGNNCC | 3 cut(s) | 8, 577, 728 |
| BmrFI | CCNGG | 1 cut(s) | 464 |
| BmsI | GCATC | 2 cut(s) | 43, 823 |
| Bsa29I | ATCGAT | 1 cut(s) | 649 |
| BsaAI | YACGTR | 1 cut(s) | 497 |
| BsaBI | GATNNNNATC | 2 cut(s) | 655, 786 |
| BsaHI | GRCGYC | 1 cut(s) | 7 |
| BsaJI | CCNNGG | 1 cut(s) | 587 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 26, 56, 511, 541, 568, 598 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 392, 393, 419, 463, 516 |
| Bse21I | CCTNAGG | 1 cut(s) | 731 |
| Bse3DI | GCAATG | 2 cut(s) | 100, 686 |
| Bse8I | GATNNNNATC | 2 cut(s) | 655, 786 |
| BseBI | CCWGG | 1 cut(s) | 464 |
| BseCI | ATCGAT | 1 cut(s) | 649 |
| BseDI | CCNNGG | 1 cut(s) | 587 |
| BseGI | GGATG | 2 cut(s) | 58, 838 |
| BseJI | GATNNNNATC | 2 cut(s) | 655, 786 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 392, 393, 419, 463, 516 |
| BseMI | GCAATG | 2 cut(s) | 100, 686 |
| BseMII | CTCAG | 3 cut(s) | 40, 291, 722 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseSI | GKGCMC | 2 cut(s) | 610, 828 |
| BseXI | GCAGC | 2 cut(s) | 691, 848 |
| Bsh1236I | CGCG | 1 cut(s) | 514 |
| BshFI | GGCC | 1 cut(s) | 343 |
| BshNI | GGYRCC | 2 cut(s) | 6, 575 |
| BshVI | ATCGAT | 1 cut(s) | 649 |
| BsiHKAI | GWGCWC | 2 cut(s) | 610, 828 |
| BslFI | GGGAC | 3 cut(s) | 438, 447, 740 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 392, 393, 419, 463, 516 |
| BsmFI | GGGAC | 3 cut(s) | 438, 447, 740 |
| BsmI | GAATGC | 1 cut(s) | 599 |
| BsnI | GGCC | 1 cut(s) | 343 |
| Bsp1286I | GDGCHC | 3 cut(s) | 446, 610, 828 |
| Bsp143I | GATC | 3 cut(s) | 45, 258, 656 |
| BspACI | CCGC | 3 cut(s) | 4, 454, 475 |
| BspANI | GGCC | 1 cut(s) | 343 |
| BspCNI | CTCAG | 3 cut(s) | 39, 292, 723 |
| BspDI | ATCGAT | 1 cut(s) | 649 |
| BspFNI | CGCG | 1 cut(s) | 514 |
| BspHI | TCATGA | 1 cut(s) | 364 |
| BspLI | GGNNCC | 3 cut(s) | 8, 577, 728 |
| BspPI | GGATC | 2 cut(s) | 266, 664 |
| BspQI | GCTCTTC | 1 cut(s) | 195 |
| BspT107I | GGYRCC | 2 cut(s) | 6, 575 |
| BsrDI | GCAATG | 2 cut(s) | 100, 686 |
| BssECI | CCNNGG | 1 cut(s) | 587 |
| BssMI | GATC | 3 cut(s) | 45, 258, 656 |
| BssNI | GRCGYC | 1 cut(s) | 7 |
| BssSI | CACGAG | 2 cut(s) | 262, 320 |
| BssT1I | CCWWGG | 1 cut(s) | 587 |
| Bst2BI | CACGAG | 2 cut(s) | 262, 320 |
| Bst2UI | CCWGG | 1 cut(s) | 464 |
| Bst4CI | ACNGT | 1 cut(s) | 236 |
| Bst6I | CTCTTC | 1 cut(s) | 195 |
| BstACI | GRCGYC | 1 cut(s) | 7 |
| BstBAI | YACGTR | 1 cut(s) | 497 |
| BstC8I | GCNNGC | 2 cut(s) | 599, 691 |
| BstDEI | CTNAG | 5 cut(s) | 26, 300, 354, 414, 731 |
| BstF5I | GGATG | 2 cut(s) | 58, 838 |
| BstFNI | CGCG | 1 cut(s) | 514 |
| BstH2I | RGCGCY | 2 cut(s) | 10, 77 |
| BstHHI | GCGC | 4 cut(s) | 9, 76, 147, 399 |
| BstKTI | GATC | 3 cut(s) | 48, 261, 659 |
| BstMBI | GATC | 3 cut(s) | 45, 258, 656 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 403 |
| BstNI | CCWGG | 1 cut(s) | 464 |
| BstSCI | CCNGG | 1 cut(s) | 462 |
| BstSFI | CTRYAG | 1 cut(s) | 294 |
| BstSLI | GKGCMC | 2 cut(s) | 610, 828 |
| BstUI | CGCG | 1 cut(s) | 514 |
| BstV1I | GCAGC | 2 cut(s) | 691, 848 |
| Bsu15I | ATCGAT | 1 cut(s) | 649 |
| Bsu36I | CCTNAGG | 1 cut(s) | 731 |
| BsuI | GTATCC | 2 cut(s) | 484, 545 |
| BsuRI | GGCC | 1 cut(s) | 343 |
| BsuTUI | ATCGAT | 1 cut(s) | 649 |
| BtsCI | GGATG | 2 cut(s) | 58, 838 |
| Cac8I | GCNNGC | 2 cut(s) | 599, 691 |
| CciI | TCATGA | 1 cut(s) | 364 |
| CfoI | GCGC | 4 cut(s) | 9, 76, 147, 399 |
| Cfr13I | GGNCC | 2 cut(s) | 342, 727 |
| ClaI | ATCGAT | 1 cut(s) | 649 |
| Csp6I | GTAC | 3 cut(s) | 237, 409, 748 |
| CviAII | CATG | 4 cut(s) | 205, 308, 365, 428 |
| CviQI | GTAC | 3 cut(s) | 237, 409, 748 |
| DdeI | CTNAG | 5 cut(s) | 26, 300, 354, 414, 731 |
| DinI | GGCGCC | 1 cut(s) | 8 |
| DpnI | GATC | 3 cut(s) | 47, 260, 658 |
| DpnII | GATC | 3 cut(s) | 45, 258, 656 |
| DraIII | CACNNNGTG | 1 cut(s) | 500 |
| Eam1104I | CTCTTC | 1 cut(s) | 195 |
| EarI | CTCTTC | 1 cut(s) | 195 |
| Eco130I | CCWWGG | 1 cut(s) | 587 |
| Eco24I | GRGCYC | 1 cut(s) | 446 |
| Eco47I | GGWCC | 1 cut(s) | 727 |
| Eco47III | AGCGCT | 1 cut(s) | 75 |
| Eco57I | CTGAAG | 2 cut(s) | 261, 834 |
| Eco72I | CACGTG | 1 cut(s) | 497 |
| Eco81I | CCTNAGG | 1 cut(s) | 731 |
| EcoO109I | RGGNCCY | 1 cut(s) | 727 |
| EcoRII | CCWGG | 1 cut(s) | 462 |
| EcoT14I | CCWWGG | 1 cut(s) | 587 |
| EcoT38I | GRGCYC | 1 cut(s) | 446 |
| EgeI | GGCGCC | 1 cut(s) | 8 |
| EheI | GGCGCC | 1 cut(s) | 8 |
| ErhI | CCWWGG | 1 cut(s) | 587 |
| FaeI | CATG | 4 cut(s) | 208, 311, 368, 431 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 735, 767 |
| FaqI | GGGAC | 3 cut(s) | 438, 447, 740 |
| FatI | CATG | 4 cut(s) | 204, 307, 364, 427 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 705, 837 |
| FokI | GGATG | 2 cut(s) | 65, 845 |
| FriOI | GRGCYC | 1 cut(s) | 446 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 705, 837 |
| FspBI | CTAG | 4 cut(s) | 77, 540, 588, 701 |
| GlaI | GCGC | 4 cut(s) | 8, 75, 146, 398 |
| GluI | GCNGC | 3 cut(s) | 5, 705, 837 |
| HaeII | RGCGCY | 2 cut(s) | 10, 77 |
| HaeIII | GGCC | 1 cut(s) | 343 |
| HhaI | GCGC | 4 cut(s) | 9, 76, 147, 399 |
| Hin1I | GRCGYC | 1 cut(s) | 7 |
| Hin1II | CATG | 4 cut(s) | 208, 311, 368, 431 |
| Hin6I | GCGC | 4 cut(s) | 7, 74, 145, 397 |
| HinP1I | GCGC | 4 cut(s) | 7, 74, 145, 397 |
| HinfI | GANTC | 1 cut(s) | 104 |
| HphI | GGTGA | 1 cut(s) | 784 |
| Hpy166II | GTNNAC | 3 cut(s) | 608, 748, 826 |
| Hpy188I | TCNGA | 2 cut(s) | 29, 184 |
| Hpy188III | TCNNGA | 3 cut(s) | 262, 322, 365 |
| Hpy8I | GTNNAC | 3 cut(s) | 608, 748, 826 |
| HpyAV | CCTTC | 1 cut(s) | 461 |
| HpyCH4III | ACNGT | 1 cut(s) | 236 |
| HpyCH4IV | ACGT | 3 cut(s) | 436, 496, 604 |
| HpyCH4V | TGCA | 8 cut(s) | 56, 383, 601, 608, 707, 755, 826, 836 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 403 |
| HpyF3I | CTNAG | 5 cut(s) | 26, 300, 354, 414, 731 |
| HpySE526I | ACGT | 3 cut(s) | 436, 496, 604 |
| Hsp92I | GRCGYC | 1 cut(s) | 7 |
| Hsp92II | CATG | 4 cut(s) | 208, 311, 368, 431 |
| HspAI | GCGC | 4 cut(s) | 7, 74, 145, 397 |
| KasI | GGCGCC | 1 cut(s) | 6 |
| Kzo9I | GATC | 3 cut(s) | 45, 258, 656 |
| LguI | GCTCTTC | 1 cut(s) | 195 |
| LmnI | GCTCC | 2 cut(s) | 403, 736 |
| LpnPI | CCDG | 7 cut(s) | 129, 237, 449, 476, 611, 700, 743 |
| Lsp1109I | GCAGC | 2 cut(s) | 691, 848 |
| LweI | GCATC | 2 cut(s) | 43, 823 |
| MaeI | CTAG | 4 cut(s) | 77, 540, 588, 701 |
| MaeII | ACGT | 3 cut(s) | 436, 496, 604 |
| MalI | GATC | 3 cut(s) | 47, 260, 658 |
| MboI | GATC | 3 cut(s) | 45, 258, 656 |
| MboII | GAAGA | 9 cut(s) | 92, 182, 337, 770, 773, 776, 779, 782, 827 |
| MfeI | CAATTG | 1 cut(s) | 660 |
| MhlI | GDGCHC | 3 cut(s) | 446, 610, 828 |
| MluCI | AATT | 7 cut(s) | 139, 178, 328, 334, 373, 614, 660 |
| MluI | ACGCGT | 1 cut(s) | 512 |
| Mly113I | GGCGCC | 1 cut(s) | 7 |
| MseI | TTAA | 2 cut(s) | 122, 617 |
| MslI | CAYNNNNRTG | 4 cut(s) | 320, 636, 651, 831 |
| MspR9I | CCNGG | 1 cut(s) | 464 |
| MunI | CAATTG | 1 cut(s) | 660 |
| Mva1269I | GAATGC | 1 cut(s) | 599 |
| MvaI | CCWGG | 1 cut(s) | 464 |
| MvnI | CGCG | 1 cut(s) | 514 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 403 |
| NarI | GGCGCC | 1 cut(s) | 7 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 45, 258, 656 |
| NlaIII | CATG | 4 cut(s) | 208, 311, 368, 431 |
| NlaIV | GGNNCC | 3 cut(s) | 8, 577, 728 |
| PagI | TCATGA | 1 cut(s) | 364 |
| PciSI | GCTCTTC | 1 cut(s) | 195 |
| PctI | GAATGC | 1 cut(s) | 599 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 3 cut(s) | 6, 706, 838 |
| PluTI | GGCGCC | 1 cut(s) | 10 |
| PmaCI | CACGTG | 1 cut(s) | 497 |
| PmlI | CACGTG | 1 cut(s) | 497 |
| Ppu21I | YACGTR | 1 cut(s) | 497 |
| PpuMI | RGGWCCY | 1 cut(s) | 727 |
| PsiI | TTATAA | 2 cut(s) | 333, 378 |
| Psp5II | RGGWCCY | 1 cut(s) | 727 |
| Psp6I | CCWGG | 1 cut(s) | 462 |
| PspCI | CACGTG | 1 cut(s) | 497 |
| PspGI | CCWGG | 1 cut(s) | 462 |
| PspN4I | GGNNCC | 3 cut(s) | 8, 577, 728 |
| PspPI | GGNCC | 2 cut(s) | 342, 727 |
| PspPPI | RGGWCCY | 1 cut(s) | 727 |
| RsaI | GTAC | 3 cut(s) | 238, 410, 749 |
| RsaNI | GTAC | 3 cut(s) | 237, 409, 748 |
| RseI | CAYNNNNRTG | 4 cut(s) | 320, 636, 651, 831 |
| SapI | GCTCTTC | 1 cut(s) | 195 |
| SaqAI | TTAA | 2 cut(s) | 122, 617 |
| SatI | GCNGC | 3 cut(s) | 5, 705, 837 |
| Sau3AI | GATC | 3 cut(s) | 45, 258, 656 |
| Sau96I | GGNCC | 2 cut(s) | 342, 727 |
| ScrFI | CCNGG | 1 cut(s) | 464 |
| SduI | GDGCHC | 3 cut(s) | 446, 610, 828 |
| SfaNI | GCATC | 2 cut(s) | 43, 823 |
| SfcI | CTRYAG | 1 cut(s) | 294 |
| SfoI | GGCGCC | 1 cut(s) | 8 |
| SinI | GGWCC | 1 cut(s) | 727 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 320, 636, 651, 831 |
| Sse9I | AATT | 7 cut(s) | 139, 178, 328, 334, 373, 614, 660 |
| SsiI | CCGC | 3 cut(s) | 4, 454, 475 |
| SspDI | GGCGCC | 1 cut(s) | 6 |
| SspMI | CTAG | 4 cut(s) | 77, 540, 588, 701 |
| StyD4I | CCNGG | 1 cut(s) | 462 |
| StyI | CCWWGG | 1 cut(s) | 587 |
| TaaI | ACNGT | 1 cut(s) | 236 |
| TaiI | ACGT | 3 cut(s) | 439, 499, 607 |
| TaqI | TCGA | 2 cut(s) | 44, 649 |
| TasI | AATT | 7 cut(s) | 139, 178, 328, 334, 373, 614, 660 |
| TauI | GCSGC | 1 cut(s) | 7 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 2 cut(s) | 122, 617 |
| Tru9I | TTAA | 2 cut(s) | 122, 617 |
| TseI | GCWGC | 2 cut(s) | 704, 836 |
| TspDTI | ATGAA | 3 cut(s) | 260, 353, 834 |
| TspGWI | ACGGA | 1 cut(s) | 271 |
| VneI | GTGCAC | 2 cut(s) | 606, 824 |
| VpaK11BI | GGWCC | 1 cut(s) | 727 |
| XmaJI | CCTAGG | 1 cut(s) | 587 |
| XspI | CTAG | 4 cut(s) | 77, 540, 588, 701 |