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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 303 |
| AccB1I | GGYRCC | 1 cut(s) | 353 |
| AccIII | TCCGGA | 1 cut(s) | 533 |
| AclI | AACGTT | 1 cut(s) | 96 |
| AcyI | GRCGYC | 1 cut(s) | 354 |
| AfaI | GTAC | 3 cut(s) | 38, 168, 460 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 46, 433, 540 |
| AgsI | TTSAA | 2 cut(s) | 160, 670 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 160 |
| AjiI | CACGTC | 1 cut(s) | 22 |
| AluBI | AGCT | 2 cut(s) | 346, 368 |
| AluI | AGCT | 2 cut(s) | 346, 368 |
| Alw21I | GWGCWC | 3 cut(s) | 27, 54, 516 |
| Ama87I | CYCGRG | 1 cut(s) | 77 |
| Aor13HI | TCCGGA | 1 cut(s) | 533 |
| AoxI | GGCC | 3 cut(s) | 505, 543, 673 |
| ApeKI | GCWGC | 1 cut(s) | 589 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 1 cut(s) | 356 |
| AspS9I | GGNCC | 1 cut(s) | 543 |
| AvaI | CYCGRG | 1 cut(s) | 77 |
| BanI | GGYRCC | 1 cut(s) | 353 |
| BbsI | GAAGAC | 2 cut(s) | 260, 669 |
| Bbv12I | GWGCWC | 3 cut(s) | 27, 54, 516 |
| BbvI | GCAGC | 1 cut(s) | 601 |
| BccI | CCATC | 4 cut(s) | 126, 202, 236, 281 |
| BfaI | CTAG | 1 cut(s) | 116 |
| BfoI | RGCGCY | 1 cut(s) | 357 |
| BisI | GCNGC | 1 cut(s) | 590 |
| BlsI | GCNGC | 1 cut(s) | 591 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 160 |
| BmeT110I | CYCGRG | 1 cut(s) | 77 |
| BmgBI | CACGTC | 1 cut(s) | 22 |
| BmgT120I | GGNCC | 1 cut(s) | 543 |
| BmiI | GGNNCC | 3 cut(s) | 355, 421, 467 |
| BmsI | GCATC | 2 cut(s) | 91, 569 |
| BpiI | GAAGAC | 2 cut(s) | 260, 669 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BsaHI | GRCGYC | 1 cut(s) | 354 |
| BsaJI | CCNNGG | 2 cut(s) | 414, 469 |
| BsaWI | WCCGGW | 1 cut(s) | 533 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 46, 433, 540 |
| Bse3DI | GCAATG | 2 cut(s) | 71, 288 |
| BseAI | TCCGGA | 1 cut(s) | 533 |
| BseDI | CCNNGG | 2 cut(s) | 414, 469 |
| BseGI | GGATG | 1 cut(s) | 560 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 46, 433, 540 |
| BseMI | GCAATG | 2 cut(s) | 71, 288 |
| BseMII | CTCAG | 1 cut(s) | 360 |
| BseRI | GAGGAG | 1 cut(s) | 62 |
| BseXI | GCAGC | 1 cut(s) | 601 |
| BshFI | GGCC | 3 cut(s) | 507, 545, 675 |
| BshNI | GGYRCC | 1 cut(s) | 353 |
| BsiHKAI | GWGCWC | 3 cut(s) | 27, 54, 516 |
| BsiHKCI | CYCGRG | 1 cut(s) | 77 |
| BsiSI | CCGG | 2 cut(s) | 517, 534 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 46, 433, 540 |
| BsnI | GGCC | 3 cut(s) | 507, 545, 675 |
| BsoBI | CYCGRG | 1 cut(s) | 77 |
| Bsp1286I | GDGCHC | 3 cut(s) | 27, 54, 516 |
| Bsp13I | TCCGGA | 1 cut(s) | 533 |
| Bsp143I | GATC | 3 cut(s) | 246, 631, 643 |
| BspANI | GGCC | 3 cut(s) | 507, 545, 675 |
| BspCNI | CTCAG | 1 cut(s) | 361 |
| BspEI | TCCGGA | 1 cut(s) | 533 |
| BspLI | GGNNCC | 3 cut(s) | 355, 421, 467 |
| BspT107I | GGYRCC | 1 cut(s) | 353 |
| BsrDI | GCAATG | 2 cut(s) | 71, 288 |
| BssECI | CCNNGG | 2 cut(s) | 414, 469 |
| BssMI | GATC | 3 cut(s) | 246, 631, 643 |
| BssNI | GRCGYC | 1 cut(s) | 354 |
| Bst4CI | ACNGT | 3 cut(s) | 401, 470, 596 |
| BstACI | GRCGYC | 1 cut(s) | 354 |
| BstDEI | CTNAG | 2 cut(s) | 369, 653 |
| BstDSI | CCRYGG | 2 cut(s) | 414, 469 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 44 |
| BstF5I | GGATG | 1 cut(s) | 560 |
| BstH2I | RGCGCY | 1 cut(s) | 357 |
| BstHHI | GCGC | 1 cut(s) | 356 |
| BstKTI | GATC | 3 cut(s) | 249, 634, 646 |
| BstMBI | GATC | 3 cut(s) | 246, 631, 643 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 557, 608 |
| BstNSI | RCATGY | 1 cut(s) | 555 |
| BstV1I | GCAGC | 1 cut(s) | 601 |
| BstV2I | GAAGAC | 2 cut(s) | 260, 669 |
| BsuRI | GGCC | 3 cut(s) | 507, 545, 675 |
| BtgI | CCRYGG | 2 cut(s) | 414, 469 |
| BtrI | CACGTC | 1 cut(s) | 22 |
| BtsCI | GGATG | 1 cut(s) | 560 |
| BtsIMutI | CAGTG | 1 cut(s) | 231 |
| CfoI | GCGC | 1 cut(s) | 356 |
| Cfr13I | GGNCC | 1 cut(s) | 543 |
| Csp6I | GTAC | 3 cut(s) | 37, 167, 459 |
| CviAII | CATG | 5 cut(s) | 13, 358, 462, 552, 619 |
| CviJI | RGCY | 8 cut(s) | 141, 188, 346, 368, 507, 520, 545, 675 |
| CviKI_1 | RGCY | 8 cut(s) | 141, 188, 346, 368, 507, 520, 545, 675 |
| CviQI | GTAC | 3 cut(s) | 37, 167, 459 |
| DdeI | CTNAG | 2 cut(s) | 369, 653 |
| DinI | GGCGCC | 1 cut(s) | 355 |
| DpnI | GATC | 3 cut(s) | 248, 633, 645 |
| DpnII | GATC | 3 cut(s) | 246, 631, 643 |
| DriI | GACNNNNNGTC | 1 cut(s) | 160 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 160 |
| Eco88I | CYCGRG | 1 cut(s) | 77 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 44 |
| EgeI | GGCGCC | 1 cut(s) | 355 |
| EheI | GGCGCC | 1 cut(s) | 355 |
| FaeI | CATG | 5 cut(s) | 16, 361, 465, 555, 622 |
| FatI | CATG | 5 cut(s) | 12, 357, 461, 551, 618 |
| Fnu4HI | GCNGC | 1 cut(s) | 590 |
| FokI | GGATG | 1 cut(s) | 547 |
| Fsp4HI | GCNGC | 1 cut(s) | 590 |
| FspBI | CTAG | 1 cut(s) | 116 |
| GlaI | GCGC | 1 cut(s) | 355 |
| GluI | GCNGC | 1 cut(s) | 590 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 1 cut(s) | 357 |
| HaeIII | GGCC | 3 cut(s) | 507, 545, 675 |
| HapII | CCGG | 2 cut(s) | 517, 534 |
| HhaI | GCGC | 1 cut(s) | 356 |
| Hin1I | GRCGYC | 1 cut(s) | 354 |
| Hin1II | CATG | 5 cut(s) | 16, 361, 465, 555, 622 |
| Hin6I | GCGC | 1 cut(s) | 354 |
| HinP1I | GCGC | 1 cut(s) | 354 |
| HindIII | AAGCTT | 1 cut(s) | 344 |
| HinfI | GANTC | 2 cut(s) | 104, 256 |
| HpaII | CCGG | 2 cut(s) | 517, 534 |
| Hpy188I | TCNGA | 1 cut(s) | 184 |
| Hpy188III | TCNNGA | 6 cut(s) | 28, 101, 116, 250, 534, 635 |
| HpyAV | CCTTC | 3 cut(s) | 200, 277, 431 |
| HpyCH4III | ACNGT | 3 cut(s) | 401, 470, 596 |
| HpyCH4IV | ACGT | 4 cut(s) | 21, 96, 363, 530 |
| HpyCH4V | TGCA | 4 cut(s) | 281, 293, 320, 575 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 557, 608 |
| HpyF3I | CTNAG | 2 cut(s) | 369, 653 |
| HpySE526I | ACGT | 4 cut(s) | 21, 96, 363, 530 |
| Hsp92I | GRCGYC | 1 cut(s) | 354 |
| Hsp92II | CATG | 5 cut(s) | 16, 361, 465, 555, 622 |
| HspAI | GCGC | 1 cut(s) | 354 |
| KasI | GGCGCC | 1 cut(s) | 353 |
| Kpn2I | TCCGGA | 1 cut(s) | 533 |
| Kzo9I | GATC | 3 cut(s) | 246, 631, 643 |
| LmnI | GCTCC | 3 cut(s) | 30, 49, 519 |
| LpnPI | CCDG | 7 cut(s) | 41, 122, 306, 530, 547, 578, 669 |
| Lsp1109I | GCAGC | 1 cut(s) | 601 |
| LweI | GCATC | 2 cut(s) | 91, 569 |
| MaeI | CTAG | 1 cut(s) | 116 |
| MaeII | ACGT | 4 cut(s) | 21, 96, 363, 530 |
| MaeIII | GTNAC | 3 cut(s) | 101, 152, 401 |
| MalI | GATC | 3 cut(s) | 248, 633, 645 |
| MboI | GATC | 3 cut(s) | 246, 631, 643 |
| MboII | GAAGA | 5 cut(s) | 265, 406, 499, 641, 674 |
| MhlI | GDGCHC | 3 cut(s) | 27, 54, 516 |
| MluCI | AATT | 3 cut(s) | 178, 298, 613 |
| Mly113I | GGCGCC | 1 cut(s) | 354 |
| MlyI | GAGTC | 2 cut(s) | 98, 250 |
| MnlI | CCTC | 7 cut(s) | 40, 50, 152, 427, 467, 497, 631 |
| MroI | TCCGGA | 1 cut(s) | 533 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 1 cut(s) | 697 |
| MslI | CAYNNNNRTG | 1 cut(s) | 15 |
| MspI | CCGG | 2 cut(s) | 517, 534 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 557, 608 |
| NarI | GGCGCC | 1 cut(s) | 354 |
| NdeII | GATC | 3 cut(s) | 246, 631, 643 |
| NlaIII | CATG | 5 cut(s) | 16, 361, 465, 555, 622 |
| NlaIV | GGNNCC | 3 cut(s) | 355, 421, 467 |
| NmuCI | GTSAC | 2 cut(s) | 101, 152 |
| NspI | RCATGY | 1 cut(s) | 555 |
| PaeR7I | CTCGAG | 1 cut(s) | 77 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PkrI | GCNGC | 1 cut(s) | 591 |
| PleI | GAGTC | 2 cut(s) | 98, 250 |
| PluTI | GGCGCC | 1 cut(s) | 357 |
| PpsI | GAGTC | 2 cut(s) | 98, 250 |
| PsiI | TTATAA | 1 cut(s) | 303 |
| Psp1406I | AACGTT | 1 cut(s) | 96 |
| PspN4I | GGNNCC | 3 cut(s) | 355, 421, 467 |
| PspPI | GGNCC | 1 cut(s) | 543 |
| PspXI | VCTCGAGB | 1 cut(s) | 77 |
| RsaI | GTAC | 3 cut(s) | 38, 168, 460 |
| RsaNI | GTAC | 3 cut(s) | 37, 167, 459 |
| RseI | CAYNNNNRTG | 1 cut(s) | 15 |
| SaqAI | TTAA | 1 cut(s) | 697 |
| SatI | GCNGC | 1 cut(s) | 590 |
| Sau3AI | GATC | 3 cut(s) | 246, 631, 643 |
| Sau96I | GGNCC | 1 cut(s) | 543 |
| SchI | GAGTC | 2 cut(s) | 98, 250 |
| SduI | GDGCHC | 3 cut(s) | 27, 54, 516 |
| SetI | ASST | 9 cut(s) | 24, 42, 99, 269, 348, 366, 370, 478, 533 |
| SfaNI | GCATC | 2 cut(s) | 91, 569 |
| SfoI | GGCGCC | 1 cut(s) | 355 |
| Sfr274I | CTCGAG | 1 cut(s) | 77 |
| SlaI | CTCGAG | 1 cut(s) | 77 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 15 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 3 cut(s) | 178, 298, 613 |
| SspDI | GGCGCC | 1 cut(s) | 353 |
| SspMI | CTAG | 1 cut(s) | 116 |
| TaaI | ACNGT | 3 cut(s) | 401, 470, 596 |
| TaiI | ACGT | 4 cut(s) | 24, 99, 366, 533 |
| TaqI | TCGA | 3 cut(s) | 42, 78, 249 |
| TasI | AATT | 3 cut(s) | 178, 298, 613 |
| Tru1I | TTAA | 1 cut(s) | 697 |
| Tru9I | TTAA | 1 cut(s) | 697 |
| TscAI | CASTG | 1 cut(s) | 238 |
| TseFI | GTSAC | 2 cut(s) | 101, 152 |
| TseI | GCWGC | 1 cut(s) | 589 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 152 |
| TspDTI | ATGAA | 3 cut(s) | 29, 329, 374 |
| TspGWI | ACGGA | 1 cut(s) | 154 |
| TspRI | CASTG | 1 cut(s) | 238 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 44 |
| XbaI | TCTAGA | 1 cut(s) | 115 |
| XceI | RCATGY | 1 cut(s) | 555 |
| XhoI | CTCGAG | 1 cut(s) | 77 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 1 cut(s) | 116 |