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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AccII | CGCG | 1 cut(s) | 246 |
| AccIII | TCCGGA | 1 cut(s) | 226 |
| AciI | CCGC | 2 cut(s) | 340, 561 |
| AclWI | GGATC | 1 cut(s) | 128 |
| AcoI | YGGCCR | 1 cut(s) | 406 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AdeI | CACNNNGTG | 1 cut(s) | 601 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 522 |
| AgsI | TTSAA | 2 cut(s) | 146, 457 |
| AluBI | AGCT | 4 cut(s) | 139, 149, 542, 593 |
| AluI | AGCT | 4 cut(s) | 139, 149, 542, 593 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 544 |
| AlwI | GGATC | 1 cut(s) | 128 |
| Aor13HI | TCCGGA | 1 cut(s) | 226 |
| AoxI | GGCC | 1 cut(s) | 406 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| AspA2I | CCTAGG | 1 cut(s) | 284 |
| AspLEI | GCGC | 2 cut(s) | 248, 463 |
| AspS9I | GGNCC | 1 cut(s) | 308 |
| AsuHPI | GGTGA | 2 cut(s) | 428, 550 |
| AvaII | GGWCC | 1 cut(s) | 308 |
| AvrII | CCTAGG | 1 cut(s) | 284 |
| BaeGI | GKGCMC | 1 cut(s) | 529 |
| BalI | TGGCCA | 1 cut(s) | 408 |
| BanII | GRGCYC | 3 cut(s) | 141, 264, 544 |
| BauI | CACGAG | 1 cut(s) | 543 |
| BbsI | GAAGAC | 1 cut(s) | 53 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 544 |
| BccI | CCATC | 2 cut(s) | 73, 447 |
| BciVI | GTATCC | 2 cut(s) | 283, 523 |
| BfaI | CTAG | 2 cut(s) | 285, 629 |
| BfmI | CTRYAG | 1 cut(s) | 111 |
| BfoI | RGCGCY | 1 cut(s) | 464 |
| BfuI | GTATCC | 2 cut(s) | 283, 523 |
| BglII | AGATCT | 1 cut(s) | 203 |
| BlnI | CCTAGG | 1 cut(s) | 284 |
| Bme18I | GGWCC | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 1 cut(s) | 308 |
| BmiI | GGNNCC | 2 cut(s) | 263, 362 |
| BmsI | GCATC | 2 cut(s) | 19, 409 |
| BpiI | GAAGAC | 1 cut(s) | 53 |
| BsaJI | CCNNGG | 1 cut(s) | 284 |
| BsaWI | WCCGGW | 1 cut(s) | 226 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 522 |
| Bse3DI | GCAATG | 1 cut(s) | 403 |
| BseAI | TCCGGA | 1 cut(s) | 226 |
| BseDI | CCNNGG | 1 cut(s) | 284 |
| BseGI | GGATG | 1 cut(s) | 177 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 522 |
| BseMI | GCAATG | 1 cut(s) | 403 |
| BseSI | GKGCMC | 1 cut(s) | 529 |
| Bsh1236I | CGCG | 1 cut(s) | 246 |
| BshFI | GGCC | 1 cut(s) | 408 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 544 |
| BsiSI | CCGG | 1 cut(s) | 227 |
| BslFI | GGGAC | 1 cut(s) | 53 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 522 |
| BsmFI | GGGAC | 1 cut(s) | 53 |
| BsnI | GGCC | 1 cut(s) | 408 |
| Bsp1286I | GDGCHC | 4 cut(s) | 141, 264, 529, 544 |
| Bsp13I | TCCGGA | 1 cut(s) | 226 |
| Bsp143I | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| BspACI | CCGC | 2 cut(s) | 340, 561 |
| BspANI | GGCC | 1 cut(s) | 408 |
| BspEI | TCCGGA | 1 cut(s) | 226 |
| BspFNI | CGCG | 1 cut(s) | 246 |
| BspHI | TCATGA | 1 cut(s) | 133 |
| BspLI | GGNNCC | 2 cut(s) | 263, 362 |
| BspPI | GGATC | 1 cut(s) | 128 |
| BsrDI | GCAATG | 1 cut(s) | 403 |
| BssECI | CCNNGG | 1 cut(s) | 284 |
| BssMI | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| BssSI | CACGAG | 1 cut(s) | 543 |
| BssT1I | CCWWGG | 1 cut(s) | 284 |
| Bst2BI | CACGAG | 1 cut(s) | 543 |
| Bst4CI | ACNGT | 1 cut(s) | 112 |
| BstDEI | CTNAG | 3 cut(s) | 87, 252, 432 |
| BstEII | GGTNACC | 1 cut(s) | 335 |
| BstF5I | GGATG | 1 cut(s) | 177 |
| BstFNI | CGCG | 1 cut(s) | 246 |
| BstH2I | RGCGCY | 1 cut(s) | 464 |
| BstHHI | GCGC | 2 cut(s) | 248, 463 |
| BstKTI | GATC | 6 cut(s) | 24, 123, 206, 520, 616, 628 |
| BstMBI | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 268, 590 |
| BstPI | GGTNACC | 1 cut(s) | 335 |
| BstSFI | CTRYAG | 1 cut(s) | 111 |
| BstSLI | GKGCMC | 1 cut(s) | 529 |
| BstUI | CGCG | 1 cut(s) | 246 |
| BstV2I | GAAGAC | 1 cut(s) | 53 |
| BstX2I | RGATCY | 1 cut(s) | 203 |
| BstYI | RGATCY | 1 cut(s) | 203 |
| BsuI | GTATCC | 2 cut(s) | 283, 523 |
| BsuRI | GGCC | 1 cut(s) | 408 |
| BtgZI | GCGATG | 1 cut(s) | 47 |
| BtsCI | GGATG | 1 cut(s) | 177 |
| CciI | TCATGA | 1 cut(s) | 133 |
| CfoI | GCGC | 2 cut(s) | 248, 463 |
| Cfr13I | GGNCC | 1 cut(s) | 308 |
| CviAII | CATG | 3 cut(s) | 134, 170, 410 |
| CviJI | RGCY | 8 cut(s) | 139, 149, 262, 402, 408, 438, 542, 593 |
| CviKI_1 | RGCY | 8 cut(s) | 139, 149, 262, 402, 408, 438, 542, 593 |
| DdeI | CTNAG | 3 cut(s) | 87, 252, 432 |
| DpnI | GATC | 6 cut(s) | 23, 122, 205, 519, 615, 627 |
| DpnII | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| DraIII | CACNNNGTG | 1 cut(s) | 601 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| EaeI | YGGCCR | 1 cut(s) | 406 |
| Ecl136II | GAGCTC | 2 cut(s) | 139, 542 |
| Eco130I | CCWWGG | 1 cut(s) | 284 |
| Eco24I | GRGCYC | 3 cut(s) | 141, 264, 544 |
| Eco47I | GGWCC | 1 cut(s) | 308 |
| Eco53kI | GAGCTC | 2 cut(s) | 139, 542 |
| Eco91I | GGTNACC | 1 cut(s) | 335 |
| EcoICRI | GAGCTC | 2 cut(s) | 139, 542 |
| EcoO65I | GGTNACC | 1 cut(s) | 335 |
| EcoRI | GAATTC | 1 cut(s) | 5 |
| EcoT14I | CCWWGG | 1 cut(s) | 284 |
| EcoT38I | GRGCYC | 3 cut(s) | 141, 264, 544 |
| ErhI | CCWWGG | 1 cut(s) | 284 |
| FaeI | CATG | 3 cut(s) | 137, 173, 413 |
| FaqI | GGGAC | 1 cut(s) | 53 |
| FatI | CATG | 3 cut(s) | 133, 169, 409 |
| FokI | GGATG | 1 cut(s) | 164 |
| FriOI | GRGCYC | 3 cut(s) | 141, 264, 544 |
| FspBI | CTAG | 2 cut(s) | 285, 629 |
| GlaI | GCGC | 2 cut(s) | 247, 462 |
| HaeII | RGCGCY | 1 cut(s) | 464 |
| HaeIII | GGCC | 1 cut(s) | 408 |
| HapII | CCGG | 1 cut(s) | 227 |
| HhaI | GCGC | 2 cut(s) | 248, 463 |
| Hin1II | CATG | 3 cut(s) | 137, 173, 413 |
| Hin6I | GCGC | 2 cut(s) | 246, 461 |
| HinP1I | GCGC | 2 cut(s) | 246, 461 |
| HinfI | GANTC | 2 cut(s) | 49, 230 |
| HpaII | CCGG | 1 cut(s) | 227 |
| HphI | GGTGA | 2 cut(s) | 428, 550 |
| Hpy188I | TCNGA | 1 cut(s) | 517 |
| Hpy188III | TCNNGA | 9 cut(s) | 134, 201, 227, 297, 501, 545, 596, 617, 629 |
| HpyAV | CCTTC | 2 cut(s) | 70, 326 |
| HpyCH4III | ACNGT | 1 cut(s) | 112 |
| HpyCH4IV | ACGT | 2 cut(s) | 301, 450 |
| HpyCH4V | TGCA | 1 cut(s) | 74 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 268, 590 |
| HpyF3I | CTNAG | 3 cut(s) | 87, 252, 432 |
| HpySE526I | ACGT | 2 cut(s) | 301, 450 |
| Hsp92II | CATG | 3 cut(s) | 137, 173, 413 |
| HspAI | GCGC | 2 cut(s) | 246, 461 |
| Kpn2I | TCCGGA | 1 cut(s) | 226 |
| Kzo9I | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| LmnI | GCTCC | 1 cut(s) | 267 |
| LpnPI | CCDG | 5 cut(s) | 84, 240, 282, 291, 390 |
| LweI | GCATC | 2 cut(s) | 19, 409 |
| MaeI | CTAG | 2 cut(s) | 285, 629 |
| MaeII | ACGT | 2 cut(s) | 301, 450 |
| MaeIII | GTNAC | 4 cut(s) | 82, 106, 335, 556 |
| MalI | GATC | 6 cut(s) | 23, 122, 205, 519, 615, 627 |
| MboI | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| MboII | GAAGA | 5 cut(s) | 58, 199, 560, 623, 632 |
| MflI | RGATCY | 1 cut(s) | 203 |
| MhlI | GDGCHC | 4 cut(s) | 141, 264, 529, 544 |
| MlsI | TGGCCA | 1 cut(s) | 408 |
| MluCI | AATT | 5 cut(s) | 5, 99, 196, 235, 552 |
| MluNI | TGGCCA | 1 cut(s) | 408 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MnlI | CCTC | 6 cut(s) | 251, 259, 362, 382, 386, 474 |
| Mox20I | TGGCCA | 1 cut(s) | 408 |
| MroI | TCCGGA | 1 cut(s) | 226 |
| MscI | TGGCCA | 1 cut(s) | 408 |
| MslI | CAYNNNNRTG | 3 cut(s) | 182, 414, 444 |
| Msp20I | TGGCCA | 1 cut(s) | 408 |
| MspI | CCGG | 1 cut(s) | 227 |
| MvnI | CGCG | 1 cut(s) | 246 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 268, 590 |
| NdeII | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| NlaIII | CATG | 3 cut(s) | 137, 173, 413 |
| NlaIV | GGNNCC | 2 cut(s) | 263, 362 |
| NmuCI | GTSAC | 1 cut(s) | 556 |
| PagI | TCATGA | 1 cut(s) | 133 |
| PfeI | GAWTC | 1 cut(s) | 230 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| Psp124BI | GAGCTC | 2 cut(s) | 141, 544 |
| PspEI | GGTNACC | 1 cut(s) | 335 |
| PspN4I | GGNNCC | 2 cut(s) | 263, 362 |
| PspPI | GGNCC | 1 cut(s) | 308 |
| PsuI | RGATCY | 1 cut(s) | 203 |
| RseI | CAYNNNNRTG | 3 cut(s) | 182, 414, 444 |
| SacI | GAGCTC | 2 cut(s) | 141, 544 |
| Sau3AI | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| Sau96I | GGNCC | 1 cut(s) | 308 |
| SchI | GAGTC | 1 cut(s) | 43 |
| SduI | GDGCHC | 4 cut(s) | 141, 264, 529, 544 |
| SfaNI | GCATC | 2 cut(s) | 19, 409 |
| SfcI | CTRYAG | 1 cut(s) | 111 |
| SinI | GGWCC | 1 cut(s) | 308 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 182, 414, 444 |
| Sse9I | AATT | 5 cut(s) | 5, 99, 196, 235, 552 |
| SsiI | CCGC | 2 cut(s) | 340, 561 |
| SspMI | CTAG | 2 cut(s) | 285, 629 |
| SstI | GAGCTC | 2 cut(s) | 141, 544 |
| StyI | CCWWGG | 1 cut(s) | 284 |
| TaaI | ACNGT | 1 cut(s) | 112 |
| TaiI | ACGT | 2 cut(s) | 304, 453 |
| TaqI | TCGA | 3 cut(s) | 97, 200, 502 |
| TasI | AATT | 5 cut(s) | 5, 99, 196, 235, 552 |
| TfiI | GAWTC | 1 cut(s) | 230 |
| TseFI | GTSAC | 1 cut(s) | 556 |
| Tsp45I | GTSAC | 1 cut(s) | 556 |
| TspDTI | ATGAA | 2 cut(s) | 122, 167 |
| TspGWI | ACGGA | 3 cut(s) | 133, 373, 488 |
| VpaK11BI | GGWCC | 1 cut(s) | 308 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XbaI | TCTAGA | 1 cut(s) | 628 |
| XmaJI | CCTAGG | 1 cut(s) | 284 |
| XspI | CTAG | 2 cut(s) | 285, 629 |