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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 303, 348 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 411 |
| Acc36I | ACCTGC | 1 cut(s) | 438 |
| AccB1I | GGYRCC | 3 cut(s) | 509, 530, 551 |
| AciI | CCGC | 2 cut(s) | 424, 445 |
| AcvI | CACGTG | 2 cut(s) | 467, 485 |
| AcyI | GRCGYC | 2 cut(s) | 7, 531 |
| AdeI | CACNNNGTG | 1 cut(s) | 470 |
| AfaI | GTAC | 2 cut(s) | 354, 647 |
| AfeI | AGCGCT | 1 cut(s) | 75 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 210, 362, 433, 565 |
| AflII | CTTAAG | 1 cut(s) | 628 |
| AflIII | ACRYGT | 2 cut(s) | 464, 482 |
| AgsI | TTSAA | 6 cut(s) | 124, 131, 160, 309, 606, 703 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 227 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 5 cut(s) | 64, 188, 247, 602, 707 |
| AluI | AGCT | 5 cut(s) | 64, 188, 247, 602, 707 |
| Alw21I | GWGCWC | 2 cut(s) | 87, 190 |
| Alw26I | GTCTC | 2 cut(s) | 332, 669 |
| Aor51HI | AGCGCT | 1 cut(s) | 75 |
| AoxI | GGCC | 1 cut(s) | 311 |
| ApeKI | GCWGC | 1 cut(s) | 731 |
| AspLEI | GCGC | 3 cut(s) | 76, 147, 533 |
| AspS9I | GGNCC | 1 cut(s) | 413 |
| AsuHPI | GGTGA | 1 cut(s) | 467 |
| AvaII | GGWCC | 1 cut(s) | 413 |
| BanI | GGYRCC | 3 cut(s) | 509, 530, 551 |
| BanII | GRGCYC | 1 cut(s) | 190 |
| BauI | CACGAG | 2 cut(s) | 290, 519 |
| BbrPI | CACGTG | 2 cut(s) | 467, 485 |
| Bbv12I | GWGCWC | 2 cut(s) | 87, 190 |
| BbvI | GCAGC | 1 cut(s) | 718 |
| BccI | CCATC | 1 cut(s) | 690 |
| BciVI | GTATCC | 1 cut(s) | 454 |
| BcoDI | GTCTC | 2 cut(s) | 332, 669 |
| BfaI | CTAG | 3 cut(s) | 77, 564, 599 |
| BfmI | CTRYAG | 3 cut(s) | 197, 264, 732 |
| BfoI | RGCGCY | 2 cut(s) | 77, 534 |
| BfrI | CTTAAG | 1 cut(s) | 628 |
| BfuAI | ACCTGC | 1 cut(s) | 438 |
| BfuI | GTATCC | 1 cut(s) | 454 |
| BisI | GCNGC | 1 cut(s) | 732 |
| BlsI | GCNGC | 1 cut(s) | 733 |
| Bme18I | GGWCC | 1 cut(s) | 413 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 227 |
| BmgT120I | GGNCC | 1 cut(s) | 413 |
| BmiI | GGNNCC | 4 cut(s) | 414, 511, 532, 553 |
| BmsI | GCATC | 2 cut(s) | 43, 718 |
| BsaAI | YACGTR | 2 cut(s) | 467, 485 |
| BsaHI | GRCGYC | 2 cut(s) | 7, 531 |
| BsaJI | CCNNGG | 2 cut(s) | 513, 534 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 26, 56, 481, 511 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 210, 362, 433, 565 |
| Bse3DI | GCAATG | 2 cut(s) | 100, 481 |
| BseDI | CCNNGG | 2 cut(s) | 513, 534 |
| BseGI | GGATG | 3 cut(s) | 58, 678, 733 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 210, 362, 433, 565 |
| BseMI | GCAATG | 2 cut(s) | 100, 481 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseXI | GCAGC | 1 cut(s) | 718 |
| BshFI | GGCC | 1 cut(s) | 313 |
| BshNI | GGYRCC | 3 cut(s) | 509, 530, 551 |
| BsiHKAI | GWGCWC | 2 cut(s) | 87, 190 |
| BslFI | GGGAC | 2 cut(s) | 417, 638 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 210, 362, 433, 565 |
| BsmAI | GTCTC | 2 cut(s) | 332, 669 |
| BsmBI | CGTCTC | 1 cut(s) | 332 |
| BsmFI | GGGAC | 2 cut(s) | 417, 638 |
| BsmI | GAATGC | 1 cut(s) | 23 |
| BsnI | GGCC | 1 cut(s) | 313 |
| Bsp1286I | GDGCHC | 2 cut(s) | 87, 190 |
| Bsp143I | GATC | 1 cut(s) | 45 |
| Bsp19I | CCATGG | 2 cut(s) | 513, 534 |
| BspACI | CCGC | 2 cut(s) | 424, 445 |
| BspANI | GGCC | 1 cut(s) | 313 |
| BspHI | TCATGA | 1 cut(s) | 334 |
| BspLI | GGNNCC | 4 cut(s) | 414, 511, 532, 553 |
| BspMAI | CTGCAG | 1 cut(s) | 736 |
| BspMI | ACCTGC | 1 cut(s) | 438 |
| BspQI | GCTCTTC | 2 cut(s) | 75, 195 |
| BspT107I | GGYRCC | 3 cut(s) | 509, 530, 551 |
| BspTI | CTTAAG | 1 cut(s) | 628 |
| BsrDI | GCAATG | 2 cut(s) | 100, 481 |
| BssECI | CCNNGG | 2 cut(s) | 513, 534 |
| BssMI | GATC | 1 cut(s) | 45 |
| BssNI | GRCGYC | 2 cut(s) | 7, 531 |
| BssSI | CACGAG | 2 cut(s) | 290, 519 |
| BssT1I | CCWWGG | 2 cut(s) | 513, 534 |
| Bst2BI | CACGAG | 2 cut(s) | 290, 519 |
| Bst4CI | ACNGT | 1 cut(s) | 201 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 195 |
| BstACI | GRCGYC | 2 cut(s) | 7, 531 |
| BstAFI | CTTAAG | 1 cut(s) | 628 |
| BstBAI | YACGTR | 2 cut(s) | 467, 485 |
| BstDEI | CTNAG | 1 cut(s) | 384 |
| BstDSI | CCRYGG | 2 cut(s) | 513, 534 |
| BstF5I | GGATG | 3 cut(s) | 58, 678, 733 |
| BstH2I | RGCGCY | 2 cut(s) | 77, 534 |
| BstHHI | GCGC | 3 cut(s) | 76, 147, 533 |
| BstKTI | GATC | 1 cut(s) | 48 |
| BstMAI | GTCTC | 2 cut(s) | 332, 669 |
| BstMBI | GATC | 1 cut(s) | 45 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 82, 579 |
| BstSFI | CTRYAG | 3 cut(s) | 197, 264, 732 |
| BstV1I | GCAGC | 1 cut(s) | 718 |
| BsuI | GTATCC | 1 cut(s) | 454 |
| BsuRI | GGCC | 1 cut(s) | 313 |
| BtgI | CCRYGG | 2 cut(s) | 513, 534 |
| BtsCI | GGATG | 3 cut(s) | 58, 678, 733 |
| BveI | ACCTGC | 1 cut(s) | 438 |
| CciI | TCATGA | 1 cut(s) | 334 |
| CfoI | GCGC | 3 cut(s) | 76, 147, 533 |
| Cfr13I | GGNCC | 1 cut(s) | 413 |
| CseI | GACGC | 2 cut(s) | 15, 375 |
| Csp6I | GTAC | 2 cut(s) | 353, 646 |
| CviAII | CATG | 5 cut(s) | 205, 278, 335, 514, 535 |
| CviJI | RGCY | 7 cut(s) | 64, 188, 247, 313, 518, 602, 707 |
| CviKI_1 | RGCY | 7 cut(s) | 64, 188, 247, 313, 518, 602, 707 |
| CviQI | GTAC | 2 cut(s) | 353, 646 |
| DdeI | CTNAG | 1 cut(s) | 384 |
| DinI | GGCGCC | 1 cut(s) | 532 |
| DpnI | GATC | 1 cut(s) | 47 |
| DpnII | GATC | 1 cut(s) | 45 |
| DraIII | CACNNNGTG | 1 cut(s) | 470 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 411 |
| DriI | GACNNNNNGTC | 1 cut(s) | 227 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 411 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 195 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 227 |
| EarI | CTCTTC | 2 cut(s) | 75, 195 |
| Ecl136II | GAGCTC | 1 cut(s) | 188 |
| Eco130I | CCWWGG | 2 cut(s) | 513, 534 |
| Eco147I | AGGCCT | 1 cut(s) | 313 |
| Eco24I | GRGCYC | 1 cut(s) | 190 |
| Eco47I | GGWCC | 1 cut(s) | 413 |
| Eco47III | AGCGCT | 1 cut(s) | 75 |
| Eco53kI | GAGCTC | 1 cut(s) | 188 |
| Eco72I | CACGTG | 2 cut(s) | 467, 485 |
| EcoICRI | GAGCTC | 1 cut(s) | 188 |
| EcoT14I | CCWWGG | 2 cut(s) | 513, 534 |
| EcoT38I | GRGCYC | 1 cut(s) | 190 |
| EgeI | GGCGCC | 1 cut(s) | 532 |
| EheI | GGCGCC | 1 cut(s) | 532 |
| ErhI | CCWWGG | 2 cut(s) | 513, 534 |
| Esp3I | CGTCTC | 1 cut(s) | 332 |
| FaeI | CATG | 5 cut(s) | 208, 281, 338, 517, 538 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 633, 665 |
| FaqI | GGGAC | 2 cut(s) | 417, 638 |
| FatI | CATG | 5 cut(s) | 204, 277, 334, 513, 534 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 1 cut(s) | 732 |
| FokI | GGATG | 3 cut(s) | 65, 665, 740 |
| FriOI | GRGCYC | 1 cut(s) | 190 |
| Fsp4HI | GCNGC | 1 cut(s) | 732 |
| FspBI | CTAG | 3 cut(s) | 77, 564, 599 |
| GlaI | GCGC | 3 cut(s) | 75, 146, 532 |
| GluI | GCNGC | 1 cut(s) | 732 |
| HaeII | RGCGCY | 2 cut(s) | 77, 534 |
| HaeIII | GGCC | 1 cut(s) | 313 |
| HgaI | GACGC | 2 cut(s) | 15, 375 |
| HhaI | GCGC | 3 cut(s) | 76, 147, 533 |
| Hin1I | GRCGYC | 2 cut(s) | 7, 531 |
| Hin1II | CATG | 5 cut(s) | 208, 281, 338, 517, 538 |
| Hin6I | GCGC | 3 cut(s) | 74, 145, 531 |
| HinP1I | GCGC | 3 cut(s) | 74, 145, 531 |
| HinfI | GANTC | 1 cut(s) | 104 |
| HphI | GGTGA | 1 cut(s) | 467 |
| Hpy166II | GTNNAC | 2 cut(s) | 221, 646 |
| Hpy188I | TCNGA | 1 cut(s) | 29 |
| Hpy188III | TCNNGA | 4 cut(s) | 183, 292, 335, 606 |
| Hpy8I | GTNNAC | 2 cut(s) | 221, 646 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 3 cut(s) | 118, 431, 570 |
| HpyCH4III | ACNGT | 1 cut(s) | 201 |
| HpyCH4IV | ACGT | 3 cut(s) | 406, 466, 484 |
| HpyCH4V | TGCA | 4 cut(s) | 56, 653, 721, 734 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 82, 579 |
| HpyF3I | CTNAG | 1 cut(s) | 384 |
| HpySE526I | ACGT | 3 cut(s) | 406, 466, 484 |
| Hsp92I | GRCGYC | 2 cut(s) | 7, 531 |
| Hsp92II | CATG | 5 cut(s) | 208, 281, 338, 517, 538 |
| HspAI | GCGC | 3 cut(s) | 74, 145, 531 |
| KasI | GGCGCC | 1 cut(s) | 530 |
| Kzo9I | GATC | 1 cut(s) | 45 |
| LguI | GCTCTTC | 2 cut(s) | 75, 195 |
| LmnI | GCTCC | 3 cut(s) | 185, 373, 634 |
| LpnPI | CCDG | 6 cut(s) | 129, 168, 240, 433, 598, 607 |
| Lsp1109I | GCAGC | 1 cut(s) | 718 |
| LweI | GCATC | 2 cut(s) | 43, 718 |
| MaeI | CTAG | 3 cut(s) | 77, 564, 599 |
| MaeII | ACGT | 3 cut(s) | 406, 466, 484 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MalI | GATC | 1 cut(s) | 47 |
| MboI | GATC | 1 cut(s) | 45 |
| MboII | GAAGA | 5 cut(s) | 92, 182, 668, 671, 674 |
| MhlI | GDGCHC | 2 cut(s) | 87, 190 |
| MluCI | AATT | 4 cut(s) | 178, 298, 304, 343 |
| Mly113I | GGCGCC | 1 cut(s) | 531 |
| MnlI | CCTC | 9 cut(s) | 119, 122, 204, 288, 394, 451, 485, 521, 688 |
| MseI | TTAA | 1 cut(s) | 629 |
| MslI | CAYNNNNRTG | 2 cut(s) | 290, 726 |
| MspCI | CTTAAG | 1 cut(s) | 628 |
| Mva1269I | GAATGC | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 82, 579 |
| NarI | GGCGCC | 1 cut(s) | 531 |
| NcoI | CCATGG | 2 cut(s) | 513, 534 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 1 cut(s) | 45 |
| NlaIII | CATG | 5 cut(s) | 208, 281, 338, 517, 538 |
| NlaIV | GGNNCC | 4 cut(s) | 414, 511, 532, 553 |
| NmuCI | GTSAC | 1 cut(s) | 229 |
| PagI | TCATGA | 1 cut(s) | 334 |
| PceI | AGGCCT | 1 cut(s) | 313 |
| PciSI | GCTCTTC | 2 cut(s) | 75, 195 |
| PctI | GAATGC | 1 cut(s) | 23 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 1 cut(s) | 733 |
| PluTI | GGCGCC | 1 cut(s) | 534 |
| PmaCI | CACGTG | 2 cut(s) | 467, 485 |
| PmlI | CACGTG | 2 cut(s) | 467, 485 |
| Ppu21I | YACGTR | 2 cut(s) | 467, 485 |
| PsiI | TTATAA | 2 cut(s) | 303, 348 |
| Psp124BI | GAGCTC | 1 cut(s) | 190 |
| PspCI | CACGTG | 2 cut(s) | 467, 485 |
| PspN4I | GGNNCC | 4 cut(s) | 414, 511, 532, 553 |
| PspPI | GGNCC | 1 cut(s) | 413 |
| PstI | CTGCAG | 1 cut(s) | 736 |
| RsaI | GTAC | 2 cut(s) | 354, 647 |
| RsaNI | GTAC | 2 cut(s) | 353, 646 |
| RseI | CAYNNNNRTG | 2 cut(s) | 290, 726 |
| SacI | GAGCTC | 1 cut(s) | 190 |
| SapI | GCTCTTC | 2 cut(s) | 75, 195 |
| SaqAI | TTAA | 1 cut(s) | 629 |
| SatI | GCNGC | 1 cut(s) | 732 |
| Sau3AI | GATC | 1 cut(s) | 45 |
| Sau96I | GGNCC | 1 cut(s) | 413 |
| SduI | GDGCHC | 2 cut(s) | 87, 190 |
| SfaNI | GCATC | 2 cut(s) | 43, 718 |
| SfcI | CTRYAG | 3 cut(s) | 197, 264, 732 |
| SfoI | GGCGCC | 1 cut(s) | 532 |
| SinI | GGWCC | 1 cut(s) | 413 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 290, 726 |
| SmlI | CTYRAG | 1 cut(s) | 628 |
| SmoI | CTYRAG | 1 cut(s) | 628 |
| Sse9I | AATT | 4 cut(s) | 178, 298, 304, 343 |
| SseBI | AGGCCT | 1 cut(s) | 313 |
| SsiI | CCGC | 2 cut(s) | 424, 445 |
| SspDI | GGCGCC | 1 cut(s) | 530 |
| SspMI | CTAG | 3 cut(s) | 77, 564, 599 |
| SstI | GAGCTC | 1 cut(s) | 190 |
| StuI | AGGCCT | 1 cut(s) | 313 |
| StyI | CCWWGG | 2 cut(s) | 513, 534 |
| TaaI | ACNGT | 1 cut(s) | 201 |
| TaiI | ACGT | 3 cut(s) | 409, 469, 487 |
| TaqI | TCGA | 1 cut(s) | 44 |
| TasI | AATT | 4 cut(s) | 178, 298, 304, 343 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 1 cut(s) | 629 |
| Tru9I | TTAA | 1 cut(s) | 629 |
| TseFI | GTSAC | 1 cut(s) | 229 |
| TseI | GCWGC | 1 cut(s) | 731 |
| Tsp45I | GTSAC | 1 cut(s) | 229 |
| TspDTI | ATGAA | 3 cut(s) | 230, 323, 729 |
| Vha464I | CTTAAG | 1 cut(s) | 628 |
| VpaK11BI | GGWCC | 1 cut(s) | 413 |
| XspI | CTAG | 3 cut(s) | 77, 564, 599 |