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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 393 |
| AccB1I | GGYRCC | 2 cut(s) | 684, 743 |
| AccBSI | CCGCTC | 1 cut(s) | 179 |
| AciI | CCGC | 4 cut(s) | 79, 179, 361, 885 |
| AclWI | GGATC | 2 cut(s) | 551, 621 |
| AcoI | YGGCCR | 1 cut(s) | 730 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcyI | GRCGYC | 1 cut(s) | 744 |
| AdeI | CACNNNGTG | 1 cut(s) | 925 |
| AgsI | TTSAA | 2 cut(s) | 376, 781 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 5 cut(s) | 155, 562, 572, 866, 917 |
| AluI | AGCT | 5 cut(s) | 155, 562, 572, 866, 917 |
| Alw21I | GWGCWC | 2 cut(s) | 564, 868 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| AlwI | GGATC | 2 cut(s) | 551, 621 |
| AoxI | GGCC | 4 cut(s) | 46, 93, 180, 730 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| AseI | ATTAAT | 1 cut(s) | 531 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 2 cut(s) | 746, 787 |
| AspS9I | GGNCC | 1 cut(s) | 47 |
| AsuHPI | GGTGA | 1 cut(s) | 874 |
| BaeGI | GKGCMC | 2 cut(s) | 687, 853 |
| BalI | TGGCCA | 1 cut(s) | 732 |
| BanI | GGYRCC | 2 cut(s) | 684, 743 |
| BanII | GRGCYC | 2 cut(s) | 564, 868 |
| BauI | CACGAG | 3 cut(s) | 119, 689, 867 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 2 cut(s) | 564, 868 |
| BccI | CCATC | 4 cut(s) | 92, 342, 496, 771 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 103, 137, 515, 549 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BclI | TGATCA | 1 cut(s) | 841 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BfoI | RGCGCY | 2 cut(s) | 747, 788 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmgT120I | GGNCC | 1 cut(s) | 47 |
| BmiI | GGNNCC | 2 cut(s) | 686, 745 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 2 cut(s) | 94, 442 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 1 cut(s) | 156 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaHI | GRCGYC | 1 cut(s) | 744 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 630 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 1 cut(s) | 630 |
| BseMII | CTCAG | 1 cut(s) | 170 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseSI | GKGCMC | 2 cut(s) | 687, 853 |
| BshFI | GGCC | 4 cut(s) | 48, 95, 182, 732 |
| BshNI | GGYRCC | 2 cut(s) | 684, 743 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 2 cut(s) | 564, 868 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsnI | GGCC | 4 cut(s) | 48, 95, 182, 732 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| Bsp1286I | GDGCHC | 4 cut(s) | 564, 687, 853, 868 |
| Bsp143I | GATC | 6 cut(s) | 444, 543, 626, 841, 937, 949 |
| BspACI | CCGC | 4 cut(s) | 79, 179, 361, 885 |
| BspANI | GGCC | 4 cut(s) | 48, 95, 182, 732 |
| BspCNI | CTCAG | 1 cut(s) | 169 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 2 cut(s) | 686, 745 |
| BspPI | GGATC | 2 cut(s) | 551, 621 |
| BspT107I | GGYRCC | 2 cut(s) | 684, 743 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrBI | CCGCTC | 1 cut(s) | 179 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssECI | CCNNGG | 1 cut(s) | 630 |
| BssMI | GATC | 6 cut(s) | 444, 543, 626, 841, 937, 949 |
| BssNI | GRCGYC | 1 cut(s) | 744 |
| BssSI | CACGAG | 3 cut(s) | 119, 689, 867 |
| Bst2BI | CACGAG | 3 cut(s) | 119, 689, 867 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 1 cut(s) | 744 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 6 cut(s) | 156, 184, 510, 675, 707, 756 |
| BstDSI | CCRYGG | 1 cut(s) | 630 |
| BstH2I | RGCGCY | 2 cut(s) | 747, 788 |
| BstHHI | GCGC | 2 cut(s) | 746, 787 |
| BstKTI | GATC | 6 cut(s) | 447, 546, 629, 844, 940, 952 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 6 cut(s) | 444, 543, 626, 841, 937, 949 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 691, 782, 893, 914 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSLI | GKGCMC | 2 cut(s) | 687, 853 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 740 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 4 cut(s) | 48, 95, 182, 732 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgI | CCRYGG | 1 cut(s) | 630 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 2 cut(s) | 746, 787 |
| Cfr13I | GGNCC | 1 cut(s) | 47 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| CseI | GACGC | 1 cut(s) | 782 |
| CviAII | CATG | 3 cut(s) | 317, 557, 734 |
| DdeI | CTNAG | 6 cut(s) | 156, 184, 510, 675, 707, 756 |
| DinI | GGCGCC | 1 cut(s) | 745 |
| DpnI | GATC | 6 cut(s) | 446, 545, 628, 843, 939, 951 |
| DpnII | GATC | 6 cut(s) | 444, 543, 626, 841, 937, 949 |
| DraIII | CACNNNGTG | 1 cut(s) | 925 |
| EaeI | YGGCCR | 1 cut(s) | 730 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 2 cut(s) | 562, 866 |
| Eco24I | GRGCYC | 2 cut(s) | 564, 868 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 2 cut(s) | 562, 866 |
| EcoICRI | GAGCTC | 2 cut(s) | 562, 866 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 2 cut(s) | 564, 868 |
| EgeI | GGCGCC | 1 cut(s) | 745 |
| EheI | GGCGCC | 1 cut(s) | 745 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 3 cut(s) | 320, 560, 737 |
| FatI | CATG | 3 cut(s) | 316, 556, 733 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FbaI | TGATCA | 1 cut(s) | 841 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FriOI | GRGCYC | 2 cut(s) | 564, 868 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GlaI | GCGC | 2 cut(s) | 745, 786 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 2 cut(s) | 747, 788 |
| HaeIII | GGCC | 4 cut(s) | 48, 95, 182, 732 |
| HgaI | GACGC | 1 cut(s) | 782 |
| HhaI | GCGC | 2 cut(s) | 746, 787 |
| Hin1I | GRCGYC | 1 cut(s) | 744 |
| Hin1II | CATG | 3 cut(s) | 320, 560, 737 |
| Hin6I | GCGC | 2 cut(s) | 744, 785 |
| HinP1I | GCGC | 2 cut(s) | 744, 785 |
| HincII | GTYRAC | 1 cut(s) | 141 |
| HindII | GTYRAC | 1 cut(s) | 141 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 220, 320, 472, 653 |
| HpaI | GTTAAC | 1 cut(s) | 141 |
| HphI | GGTGA | 1 cut(s) | 874 |
| Hpy166II | GTNNAC | 1 cut(s) | 141 |
| Hpy188I | TCNGA | 2 cut(s) | 400, 841 |
| Hpy188III | TCNNGA | 8 cut(s) | 71, 386, 557, 624, 650, 825, 869, 941 |
| Hpy8I | GTNNAC | 1 cut(s) | 141 |
| HpyAV | CCTTC | 2 cut(s) | 270, 493 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 312 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 536 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 691, 782, 893, 914 |
| HpyF3I | CTNAG | 6 cut(s) | 156, 184, 510, 675, 707, 756 |
| HpySE526I | ACGT | 1 cut(s) | 312 |
| Hsp92I | GRCGYC | 1 cut(s) | 744 |
| Hsp92II | CATG | 3 cut(s) | 320, 560, 737 |
| HspAI | GCGC | 2 cut(s) | 744, 785 |
| KasI | GGCGCC | 1 cut(s) | 743 |
| Ksp22I | TGATCA | 1 cut(s) | 841 |
| KspAI | GTTAAC | 1 cut(s) | 141 |
| Kzo9I | GATC | 6 cut(s) | 444, 543, 626, 841, 937, 949 |
| LmnI | GCTCC | 2 cut(s) | 246, 569 |
| LweI | GCATC | 2 cut(s) | 94, 442 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeII | ACGT | 1 cut(s) | 312 |
| MaeIII | GTNAC | 1 cut(s) | 880 |
| MalI | GATC | 6 cut(s) | 446, 545, 628, 843, 939, 951 |
| MbiI | CCGCTC | 1 cut(s) | 179 |
| MboI | GATC | 6 cut(s) | 444, 543, 626, 841, 937, 949 |
| MboII | GAAGA | 8 cut(s) | 275, 278, 308, 481, 622, 884, 947, 956 |
| MfeI | CAATTG | 1 cut(s) | 42 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MhlI | GDGCHC | 4 cut(s) | 564, 687, 853, 868 |
| MlsI | TGGCCA | 1 cut(s) | 732 |
| MluCI | AATT | 6 cut(s) | 17, 42, 235, 428, 619, 658 |
| MluNI | TGGCCA | 1 cut(s) | 732 |
| Mly113I | GGCGCC | 1 cut(s) | 744 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MnlI | CCTC | 8 cut(s) | 181, 368, 674, 682, 706, 710, 736, 798 |
| Mox20I | TGGCCA | 1 cut(s) | 732 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MscI | TGGCCA | 1 cut(s) | 732 |
| MseI | TTAA | 4 cut(s) | 140, 414, 422, 531 |
| MslI | CAYNNNNRTG | 2 cut(s) | 738, 768 |
| Msp20I | TGGCCA | 1 cut(s) | 732 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MunI | CAATTG | 1 cut(s) | 42 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 691, 782, 893, 914 |
| NarI | GGCGCC | 1 cut(s) | 744 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 6 cut(s) | 444, 543, 626, 841, 937, 949 |
| NlaIII | CATG | 3 cut(s) | 320, 560, 737 |
| NlaIV | GGNNCC | 2 cut(s) | 686, 745 |
| NmuCI | GTSAC | 1 cut(s) | 880 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 653 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PluTI | GGCGCC | 1 cut(s) | 747 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PshBI | ATTAAT | 1 cut(s) | 531 |
| PsiI | TTATAA | 1 cut(s) | 393 |
| Psp124BI | GAGCTC | 2 cut(s) | 564, 868 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 2 cut(s) | 686, 745 |
| PspPI | GGNCC | 1 cut(s) | 47 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RseI | CAYNNNNRTG | 2 cut(s) | 738, 768 |
| SacI | GAGCTC | 2 cut(s) | 564, 868 |
| SaqAI | TTAA | 4 cut(s) | 140, 414, 422, 531 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 6 cut(s) | 444, 543, 626, 841, 937, 949 |
| Sau96I | GGNCC | 1 cut(s) | 47 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 4 cut(s) | 564, 687, 853, 868 |
| SfaNI | GCATC | 2 cut(s) | 94, 442 |
| SfoI | GGCGCC | 1 cut(s) | 745 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 738, 768 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 6 cut(s) | 17, 42, 235, 428, 619, 658 |
| SsiI | CCGC | 4 cut(s) | 79, 179, 361, 885 |
| SspDI | GGCGCC | 1 cut(s) | 743 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| SstI | GAGCTC | 2 cut(s) | 564, 868 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 315 |
| TaqI | TCGA | 5 cut(s) | 294, 525, 623, 804, 826 |
| TasI | AATT | 6 cut(s) | 17, 42, 235, 428, 619, 658 |
| TauI | GCSGC | 1 cut(s) | 182 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 653 |
| Tru1I | TTAA | 4 cut(s) | 140, 414, 422, 531 |
| Tru9I | TTAA | 4 cut(s) | 140, 414, 422, 531 |
| TseFI | GTSAC | 1 cut(s) | 880 |
| Tsp45I | GTSAC | 1 cut(s) | 880 |
| TspDTI | ATGAA | 4 cut(s) | 21, 276, 545, 590 |
| TspGWI | ACGGA | 2 cut(s) | 556, 619 |
| VspI | ATTAAT | 1 cut(s) | 531 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 2 cut(s) | 126, 338 |