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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 684 |
| AciI | CCGC | 3 cut(s) | 79, 361, 541 |
| AclWI | GGATC | 1 cut(s) | 293 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcyI | GRCGYC | 1 cut(s) | 685 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 680 |
| AflII | CTTAAG | 1 cut(s) | 119 |
| AgsI | TTSAA | 2 cut(s) | 296, 376 |
| AjnI | CCWGG | 2 cut(s) | 105, 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AleI | CACNNNNGTG | 1 cut(s) | 452 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 562, 584 |
| AluI | AGCT | 4 cut(s) | 155, 161, 562, 584 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 2 cut(s) | 496, 619 |
| AlwI | GGATC | 1 cut(s) | 293 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 2 cut(s) | 671, 687 |
| AspS9I | GGNCC | 1 cut(s) | 268 |
| AvaII | GGWCC | 1 cut(s) | 268 |
| AxyI | CCTNAGG | 1 cut(s) | 675 |
| BanI | GGYRCC | 1 cut(s) | 684 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 4 cut(s) | 92, 215, 342, 496 |
| BciT130I | CCWGG | 2 cut(s) | 107, 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 2 cut(s) | 496, 619 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BfmI | CTRYAG | 1 cut(s) | 534 |
| BfoI | RGCGCY | 1 cut(s) | 688 |
| BfrI | CTTAAG | 1 cut(s) | 119 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 131 |
| Bme18I | GGWCC | 1 cut(s) | 268 |
| BmgT120I | GGNCC | 1 cut(s) | 268 |
| BmiI | GGNNCC | 3 cut(s) | 270, 571, 686 |
| BmrFI | CCNGG | 2 cut(s) | 107, 131 |
| BpmI | CTGGAG | 1 cut(s) | 671 |
| BpuEI | CTTGAG | 2 cut(s) | 141, 227 |
| BsaHI | GRCGYC | 1 cut(s) | 685 |
| BsaI | GGTCTC | 1 cut(s) | 619 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 680 |
| Bse1I | ACTGG | 1 cut(s) | 24 |
| Bse21I | CCTNAGG | 1 cut(s) | 675 |
| BseBI | CCWGG | 2 cut(s) | 107, 131 |
| BseGI | GGATG | 3 cut(s) | 139, 238, 600 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BseMII | CTCAG | 2 cut(s) | 335, 630 |
| BseNI | ACTGG | 1 cut(s) | 24 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshNI | GGYRCC | 1 cut(s) | 684 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BsmAI | GTCTC | 2 cut(s) | 496, 619 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 1 cut(s) | 619 |
| Bsp1286I | GDGCHC | 1 cut(s) | 564 |
| Bsp143I | GATC | 1 cut(s) | 285 |
| BspACI | CCGC | 3 cut(s) | 79, 361, 541 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspCNI | CTCAG | 2 cut(s) | 336, 631 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 3 cut(s) | 270, 571, 686 |
| BspMAI | CTGCAG | 1 cut(s) | 538 |
| BspPI | GGATC | 1 cut(s) | 293 |
| BspT107I | GGYRCC | 1 cut(s) | 684 |
| BspTI | CTTAAG | 1 cut(s) | 119 |
| BspTNI | GGTCTC | 1 cut(s) | 619 |
| BsrI | ACTGG | 1 cut(s) | 24 |
| BssMI | GATC | 1 cut(s) | 285 |
| BssNI | GRCGYC | 1 cut(s) | 685 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 131 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 382 |
| Bst6I | CTCTTC | 1 cut(s) | 258 |
| BstACI | GRCGYC | 1 cut(s) | 685 |
| BstAFI | CTTAAG | 1 cut(s) | 119 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 4 cut(s) | 184, 344, 639, 675 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 678 |
| BstF5I | GGATG | 3 cut(s) | 139, 238, 600 |
| BstH2I | RGCGCY | 1 cut(s) | 688 |
| BstHHI | GCGC | 2 cut(s) | 671, 687 |
| BstKTI | GATC | 1 cut(s) | 288 |
| BstMAI | GTCTC | 2 cut(s) | 496, 619 |
| BstMBI | GATC | 1 cut(s) | 285 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| BstNI | CCWGG | 2 cut(s) | 107, 131 |
| BstSCI | CCNGG | 2 cut(s) | 105, 129 |
| BstSFI | CTRYAG | 1 cut(s) | 534 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstX2I | RGATCY | 1 cut(s) | 285 |
| BstYI | RGATCY | 1 cut(s) | 285 |
| Bsu36I | CCTNAGG | 1 cut(s) | 675 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtsCI | GGATG | 3 cut(s) | 139, 238, 600 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 2 cut(s) | 671, 687 |
| Cfr13I | GGNCC | 1 cut(s) | 268 |
| CviAII | CATG | 3 cut(s) | 557, 574, 593 |
| DdeI | CTNAG | 4 cut(s) | 184, 344, 639, 675 |
| DinI | GGCGCC | 1 cut(s) | 686 |
| DpnI | GATC | 1 cut(s) | 287 |
| DpnII | GATC | 1 cut(s) | 285 |
| Eam1104I | CTCTTC | 1 cut(s) | 258 |
| EarI | CTCTTC | 1 cut(s) | 258 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 1 cut(s) | 619 |
| Eco32I | GATATC | 3 cut(s) | 56, 76, 445 |
| Eco47I | GGWCC | 1 cut(s) | 268 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco81I | CCTNAGG | 1 cut(s) | 675 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 678 |
| EcoO109I | RGGNCCY | 1 cut(s) | 268 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 2 cut(s) | 105, 129 |
| EcoRV | GATATC | 3 cut(s) | 56, 76, 445 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| EgeI | GGCGCC | 1 cut(s) | 686 |
| EheI | GGCGCC | 1 cut(s) | 686 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 3 cut(s) | 560, 577, 596 |
| FatI | CATG | 3 cut(s) | 556, 573, 592 |
| FauI | CCCGC | 1 cut(s) | 534 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 146, 245, 587 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GlaI | GCGC | 2 cut(s) | 670, 686 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 671 |
| HaeII | RGCGCY | 1 cut(s) | 688 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HhaI | GCGC | 2 cut(s) | 671, 687 |
| Hin1I | GRCGYC | 1 cut(s) | 685 |
| Hin1II | CATG | 3 cut(s) | 560, 577, 596 |
| Hin6I | GCGC | 2 cut(s) | 669, 685 |
| HinP1I | GCGC | 2 cut(s) | 669, 685 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 102, 115, 220, 236, 320, 472, 522, 653 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 8 cut(s) | 51, 71, 332, 376, 386, 557, 624, 650 |
| HpyAV | CCTTC | 2 cut(s) | 270, 493 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 382 |
| HpyCH4V | TGCA | 2 cut(s) | 509, 536 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| HpyF3I | CTNAG | 4 cut(s) | 184, 344, 639, 675 |
| Hsp92I | GRCGYC | 1 cut(s) | 685 |
| Hsp92II | CATG | 3 cut(s) | 560, 577, 596 |
| HspAI | GCGC | 2 cut(s) | 669, 685 |
| KasI | GGCGCC | 1 cut(s) | 684 |
| Kzo9I | GATC | 1 cut(s) | 285 |
| LmnI | GCTCC | 1 cut(s) | 569 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeIII | GTNAC | 4 cut(s) | 5, 317, 529, 544 |
| MalI | GATC | 1 cut(s) | 287 |
| MboI | GATC | 1 cut(s) | 285 |
| MboII | GAAGA | 2 cut(s) | 275, 308 |
| MfeI | CAATTG | 1 cut(s) | 42 |
| MflI | RGATCY | 1 cut(s) | 285 |
| MhlI | GDGCHC | 1 cut(s) | 564 |
| MluCI | AATT | 4 cut(s) | 42, 428, 619, 658 |
| Mly113I | GGCGCC | 1 cut(s) | 685 |
| MlyI | GAGTC | 4 cut(s) | 214, 314, 466, 662 |
| MnlI | CCTC | 5 cut(s) | 181, 259, 368, 462, 674 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 4 cut(s) | 90, 120, 414, 422 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 231, 452 |
| MspCI | CTTAAG | 1 cut(s) | 119 |
| MspR9I | CCNGG | 2 cut(s) | 107, 131 |
| MunI | CAATTG | 1 cut(s) | 42 |
| MvaI | CCWGG | 2 cut(s) | 107, 131 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| NarI | GGCGCC | 1 cut(s) | 685 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 1 cut(s) | 285 |
| NlaIII | CATG | 3 cut(s) | 560, 577, 596 |
| NlaIV | GGNNCC | 3 cut(s) | 270, 571, 686 |
| NmuCI | GTSAC | 2 cut(s) | 317, 544 |
| OliI | CACNNNNGTG | 1 cut(s) | 452 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 522 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 4 cut(s) | 214, 314, 466, 661 |
| PluTI | GGCGCC | 1 cut(s) | 688 |
| PpsI | GAGTC | 4 cut(s) | 214, 314, 466, 661 |
| PpuMI | RGGWCCY | 1 cut(s) | 268 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp5II | RGGWCCY | 1 cut(s) | 268 |
| Psp6I | CCWGG | 2 cut(s) | 105, 129 |
| PspGI | CCWGG | 2 cut(s) | 105, 129 |
| PspN4I | GGNNCC | 3 cut(s) | 270, 571, 686 |
| PspPI | GGNCC | 1 cut(s) | 268 |
| PspPPI | RGGWCCY | 1 cut(s) | 268 |
| PstI | CTGCAG | 1 cut(s) | 538 |
| PsuI | RGATCY | 1 cut(s) | 285 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 231, 452 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 4 cut(s) | 90, 120, 414, 422 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 1 cut(s) | 285 |
| Sau96I | GGNCC | 1 cut(s) | 268 |
| SchI | GAGTC | 4 cut(s) | 214, 314, 466, 662 |
| ScrFI | CCNGG | 2 cut(s) | 107, 131 |
| SduI | GDGCHC | 1 cut(s) | 564 |
| SetI | ASST | 8 cut(s) | 12, 157, 163, 485, 554, 564, 586, 631 |
| SfcI | CTRYAG | 1 cut(s) | 534 |
| SfoI | GGCGCC | 1 cut(s) | 686 |
| SinI | GGWCC | 1 cut(s) | 268 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 231, 452 |
| SmlI | CTYRAG | 3 cut(s) | 119, 156, 242 |
| SmoI | CTYRAG | 3 cut(s) | 119, 156, 242 |
| Sse9I | AATT | 4 cut(s) | 42, 428, 619, 658 |
| SsiI | CCGC | 3 cut(s) | 79, 361, 541 |
| SspDI | GGCGCC | 1 cut(s) | 684 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StyD4I | CCNGG | 2 cut(s) | 105, 129 |
| TaaI | ACNGT | 2 cut(s) | 145, 382 |
| TaqI | TCGA | 2 cut(s) | 520, 623 |
| TasI | AATT | 4 cut(s) | 42, 428, 619, 658 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 522 |
| Tru1I | TTAA | 4 cut(s) | 90, 120, 414, 422 |
| Tru9I | TTAA | 4 cut(s) | 90, 120, 414, 422 |
| TseFI | GTSAC | 2 cut(s) | 317, 544 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 544 |
| TspDTI | ATGAA | 3 cut(s) | 272, 276, 590 |
| Vha464I | CTTAAG | 1 cut(s) | 119 |
| VpaK11BI | GGWCC | 1 cut(s) | 268 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 678 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 2 cut(s) | 126, 338 |