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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 193 |
| AciI | CCGC | 4 cut(s) | 71, 290, 593, 596 |
| AclWI | GGATC | 7 cut(s) | 171, 185, 192, 229, 300, 348, 369 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcuI | CTGAAG | 1 cut(s) | 140 |
| AdeI | CACNNNGTG | 1 cut(s) | 65 |
| AfaI | GTAC | 1 cut(s) | 481 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 80, 239 |
| AgeI | ACCGGT | 1 cut(s) | 196 |
| AjnI | CCWGG | 1 cut(s) | 397 |
| AluBI | AGCT | 3 cut(s) | 129, 145, 502 |
| AluI | AGCT | 3 cut(s) | 129, 145, 502 |
| Alw21I | GWGCWC | 1 cut(s) | 131 |
| Alw26I | GTCTC | 1 cut(s) | 615 |
| AlwI | GGATC | 7 cut(s) | 171, 185, 192, 229, 300, 348, 369 |
| AoxI | GGCC | 5 cut(s) | 3, 105, 299, 644, 653 |
| ApeKI | GCWGC | 4 cut(s) | 229, 418, 427, 551 |
| AsiGI | ACCGGT | 1 cut(s) | 196 |
| AspS9I | GGNCC | 3 cut(s) | 105, 644, 653 |
| AsuNHI | GCTAGC | 1 cut(s) | 11 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 2 cut(s) | 131, 689 |
| Bbv12I | GWGCWC | 1 cut(s) | 131 |
| BbvI | GCAGC | 4 cut(s) | 216, 430, 439, 563 |
| BccI | CCATC | 6 cut(s) | 73, 260, 400, 562, 566, 630 |
| BciT130I | CCWGG | 1 cut(s) | 399 |
| BcoDI | GTCTC | 1 cut(s) | 615 |
| BfaI | CTAG | 3 cut(s) | 12, 62, 146 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 652 |
| BglII | AGATCT | 2 cut(s) | 305, 319 |
| BisI | GCNGC | 6 cut(s) | 230, 419, 428, 552, 594, 597 |
| BlsI | GCNGC | 6 cut(s) | 231, 420, 429, 553, 595, 598 |
| Bme1390I | CCNGG | 1 cut(s) | 399 |
| BmgT120I | GGNCC | 3 cut(s) | 105, 644, 653 |
| BmiI | GGNNCC | 1 cut(s) | 396 |
| BmrFI | CCNGG | 1 cut(s) | 399 |
| BmrI | ACTGGG | 2 cut(s) | 361, 651 |
| BmsI | GCATC | 1 cut(s) | 213 |
| BmtI | GCTAGC | 1 cut(s) | 15 |
| BmuI | ACTGGG | 2 cut(s) | 361, 651 |
| BpmI | CTGGAG | 2 cut(s) | 420, 454 |
| BsaJI | CCNNGG | 5 cut(s) | 74, 108, 132, 233, 656 |
| BsaWI | WCCGGW | 1 cut(s) | 196 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 80, 239 |
| Bse118I | RCCGGY | 1 cut(s) | 196 |
| Bse1I | ACTGG | 4 cut(s) | 356, 437, 487, 646 |
| Bse3DI | GCAATG | 1 cut(s) | 6 |
| BseBI | CCWGG | 1 cut(s) | 399 |
| BseDI | CCNNGG | 5 cut(s) | 74, 108, 132, 233, 656 |
| BseGI | GGATG | 5 cut(s) | 84, 90, 271, 577, 641 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 80, 239 |
| BseMI | GCAATG | 1 cut(s) | 6 |
| BseMII | CTCAG | 2 cut(s) | 287, 525 |
| BseNI | ACTGG | 4 cut(s) | 356, 437, 487, 646 |
| BseXI | GCAGC | 4 cut(s) | 216, 430, 439, 563 |
| Bsh1285I | CGRYCG | 2 cut(s) | 193, 197 |
| BshFI | GGCC | 5 cut(s) | 5, 107, 301, 646, 655 |
| BshTI | ACCGGT | 1 cut(s) | 196 |
| BsiEI | CGRYCG | 2 cut(s) | 193, 197 |
| BsiHKAI | GWGCWC | 1 cut(s) | 131 |
| BsiSI | CCGG | 1 cut(s) | 197 |
| BslFI | GGGAC | 1 cut(s) | 423 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 80, 239 |
| BsmAI | GTCTC | 1 cut(s) | 615 |
| BsmFI | GGGAC | 1 cut(s) | 423 |
| BsnI | GGCC | 5 cut(s) | 5, 107, 301, 646, 655 |
| Bsp1286I | GDGCHC | 2 cut(s) | 131, 689 |
| Bsp19I | CCATGG | 1 cut(s) | 108 |
| BspACI | CCGC | 4 cut(s) | 71, 290, 593, 596 |
| BspANI | GGCC | 5 cut(s) | 5, 107, 301, 646, 655 |
| BspCNI | CTCAG | 2 cut(s) | 288, 524 |
| BspLI | GGNNCC | 1 cut(s) | 396 |
| BspOI | GCTAGC | 1 cut(s) | 15 |
| BspPI | GGATC | 7 cut(s) | 171, 185, 192, 229, 300, 348, 369 |
| BsrDI | GCAATG | 1 cut(s) | 6 |
| BsrFI | RCCGGY | 1 cut(s) | 196 |
| BsrI | ACTGG | 4 cut(s) | 356, 437, 487, 646 |
| BssAI | RCCGGY | 1 cut(s) | 196 |
| BssECI | CCNNGG | 5 cut(s) | 74, 108, 132, 233, 656 |
| BssT1I | CCWWGG | 5 cut(s) | 74, 108, 132, 233, 656 |
| Bst2UI | CCWGG | 1 cut(s) | 399 |
| Bst4CI | ACNGT | 1 cut(s) | 632 |
| BstC8I | GCNNGC | 1 cut(s) | 13 |
| BstDEI | CTNAG | 2 cut(s) | 296, 511 |
| BstDSI | CCRYGG | 1 cut(s) | 108 |
| BstF5I | GGATG | 5 cut(s) | 84, 90, 271, 577, 641 |
| BstMAI | GTCTC | 1 cut(s) | 615 |
| BstMCI | CGRYCG | 2 cut(s) | 193, 197 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 104, 424, 427, 474, 652 |
| BstNI | CCWGG | 1 cut(s) | 399 |
| BstSCI | CCNGG | 1 cut(s) | 397 |
| BstV1I | GCAGC | 4 cut(s) | 216, 430, 439, 563 |
| BstX2I | RGATCY | 5 cut(s) | 177, 184, 292, 305, 319 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 139 |
| BstYI | RGATCY | 5 cut(s) | 177, 184, 292, 305, 319 |
| BsuRI | GGCC | 5 cut(s) | 5, 107, 301, 646, 655 |
| BtgI | CCRYGG | 1 cut(s) | 108 |
| BtsCI | GGATG | 5 cut(s) | 84, 90, 271, 577, 641 |
| BtsIMutI | CAGTG | 2 cut(s) | 350, 430 |
| Cac8I | GCNNGC | 1 cut(s) | 13 |
| Cfr10I | RCCGGY | 1 cut(s) | 196 |
| Cfr13I | GGNCC | 3 cut(s) | 105, 644, 653 |
| Csp6I | GTAC | 1 cut(s) | 480 |
| CspAI | ACCGGT | 1 cut(s) | 196 |
| CviAII | CATG | 2 cut(s) | 109, 555 |
| CviQI | GTAC | 1 cut(s) | 480 |
| DdeI | CTNAG | 2 cut(s) | 296, 511 |
| DraIII | CACNNNGTG | 1 cut(s) | 65 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| EciI | GGCGGA | 2 cut(s) | 60, 305 |
| Ecl136II | GAGCTC | 1 cut(s) | 129 |
| Eco130I | CCWWGG | 5 cut(s) | 74, 108, 132, 233, 656 |
| Eco24I | GRGCYC | 2 cut(s) | 131, 689 |
| Eco53kI | GAGCTC | 1 cut(s) | 129 |
| Eco57I | CTGAAG | 1 cut(s) | 140 |
| EcoICRI | GAGCTC | 1 cut(s) | 129 |
| EcoRII | CCWGG | 1 cut(s) | 397 |
| EcoT14I | CCWWGG | 5 cut(s) | 74, 108, 132, 233, 656 |
| EcoT38I | GRGCYC | 2 cut(s) | 131, 689 |
| ErhI | CCWWGG | 5 cut(s) | 74, 108, 132, 233, 656 |
| FaeI | CATG | 2 cut(s) | 112, 558 |
| FaiI | YATR | 3 cut(s) | 110, 492, 556 |
| FaqI | GGGAC | 1 cut(s) | 423 |
| FatI | CATG | 2 cut(s) | 108, 554 |
| FblI | GTMKAC | 1 cut(s) | 193 |
| Fnu4HI | GCNGC | 6 cut(s) | 230, 419, 428, 552, 594, 597 |
| FokI | GGATG | 5 cut(s) | 91, 97, 278, 584, 648 |
| FriOI | GRGCYC | 2 cut(s) | 131, 689 |
| Fsp4HI | GCNGC | 6 cut(s) | 230, 419, 428, 552, 594, 597 |
| FspBI | CTAG | 3 cut(s) | 12, 62, 146 |
| GluI | GCNGC | 6 cut(s) | 230, 419, 428, 552, 594, 597 |
| GsuI | CTGGAG | 2 cut(s) | 420, 454 |
| HaeIII | GGCC | 5 cut(s) | 5, 107, 301, 646, 655 |
| HapII | CCGG | 1 cut(s) | 197 |
| Hin1II | CATG | 2 cut(s) | 112, 558 |
| HincII | GTYRAC | 1 cut(s) | 194 |
| HindII | GTYRAC | 1 cut(s) | 194 |
| HinfI | GANTC | 3 cut(s) | 171, 436, 539 |
| HpaII | CCGG | 1 cut(s) | 197 |
| Hpy166II | GTNNAC | 1 cut(s) | 194 |
| Hpy188I | TCNGA | 7 cut(s) | 120, 163, 297, 334, 375, 382, 544 |
| Hpy188III | TCNNGA | 1 cut(s) | 175 |
| Hpy8I | GTNNAC | 1 cut(s) | 194 |
| HpyAV | CCTTC | 1 cut(s) | 452 |
| HpyCH4III | ACNGT | 1 cut(s) | 632 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 104, 424, 427, 474, 652 |
| HpyF3I | CTNAG | 2 cut(s) | 296, 511 |
| Hsp92II | CATG | 2 cut(s) | 112, 558 |
| LmnI | GCTCC | 3 cut(s) | 134, 142, 394 |
| Lsp1109I | GCAGC | 4 cut(s) | 216, 430, 439, 563 |
| LweI | GCATC | 1 cut(s) | 213 |
| MaeI | CTAG | 3 cut(s) | 12, 62, 146 |
| MaeIII | GTNAC | 2 cut(s) | 347, 448 |
| MboII | GAAGA | 1 cut(s) | 29 |
| MflI | RGATCY | 5 cut(s) | 177, 184, 292, 305, 319 |
| MhlI | GDGCHC | 2 cut(s) | 131, 689 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 1 cut(s) | 335 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 180, 445, 548 |
| MmeI | TCCRAC | 3 cut(s) | 141, 392, 522 |
| MnlI | CCTC | 3 cut(s) | 291, 408, 571 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 1 cut(s) | 156 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 1 cut(s) | 197 |
| MspR9I | CCNGG | 1 cut(s) | 399 |
| MvaI | CCWGG | 1 cut(s) | 399 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 104, 424, 427, 474, 652 |
| NcoI | CCATGG | 1 cut(s) | 108 |
| NheI | GCTAGC | 1 cut(s) | 11 |
| NlaIII | CATG | 2 cut(s) | 112, 558 |
| NlaIV | GGNNCC | 1 cut(s) | 396 |
| NmeAIII | GCCGAG | 2 cut(s) | 150, 327 |
| NmuCI | GTSAC | 1 cut(s) | 347 |
| PflFI | GACNNNGTC | 1 cut(s) | 538 |
| PinAI | ACCGGT | 1 cut(s) | 196 |
| PkrI | GCNGC | 6 cut(s) | 231, 420, 429, 553, 595, 598 |
| PleI | GAGTC | 3 cut(s) | 179, 444, 547 |
| PpsI | GAGTC | 3 cut(s) | 179, 444, 547 |
| Psp124BI | GAGCTC | 1 cut(s) | 131 |
| Psp6I | CCWGG | 1 cut(s) | 397 |
| PspGI | CCWGG | 1 cut(s) | 397 |
| PspN4I | GGNNCC | 1 cut(s) | 396 |
| PspPI | GGNCC | 3 cut(s) | 105, 644, 653 |
| PsuI | RGATCY | 5 cut(s) | 177, 184, 292, 305, 319 |
| PsyI | GACNNNGTC | 1 cut(s) | 538 |
| RsaI | GTAC | 1 cut(s) | 481 |
| RsaNI | GTAC | 1 cut(s) | 480 |
| SacI | GAGCTC | 1 cut(s) | 131 |
| SalI | GTCGAC | 1 cut(s) | 192 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| SatI | GCNGC | 6 cut(s) | 230, 419, 428, 552, 594, 597 |
| Sau96I | GGNCC | 3 cut(s) | 105, 644, 653 |
| SchI | GAGTC | 3 cut(s) | 180, 445, 548 |
| ScrFI | CCNGG | 1 cut(s) | 399 |
| SduI | GDGCHC | 2 cut(s) | 131, 689 |
| SetI | ASST | 7 cut(s) | 67, 131, 147, 275, 455, 504, 582 |
| SfaNI | GCATC | 1 cut(s) | 213 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 652 |
| Sse9I | AATT | 1 cut(s) | 335 |
| SsiI | CCGC | 4 cut(s) | 71, 290, 593, 596 |
| SspMI | CTAG | 3 cut(s) | 12, 62, 146 |
| SstI | GAGCTC | 1 cut(s) | 131 |
| StyD4I | CCNGG | 1 cut(s) | 397 |
| StyI | CCWWGG | 5 cut(s) | 74, 108, 132, 233, 656 |
| TaaI | ACNGT | 1 cut(s) | 632 |
| TaqI | TCGA | 2 cut(s) | 51, 193 |
| TaqII | GACCGA | 1 cut(s) | 179 |
| TasI | AATT | 1 cut(s) | 335 |
| TatI | WGTACW | 1 cut(s) | 479 |
| TauI | GCSGC | 2 cut(s) | 596, 599 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TscAI | CASTG | 2 cut(s) | 350, 437 |
| TseFI | GTSAC | 1 cut(s) | 347 |
| TseI | GCWGC | 4 cut(s) | 229, 418, 427, 551 |
| Tsp45I | GTSAC | 1 cut(s) | 347 |
| TspGWI | ACGGA | 2 cut(s) | 327, 551 |
| TspRI | CASTG | 2 cut(s) | 350, 437 |
| Tth111I | GACNNNGTC | 1 cut(s) | 538 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 629, 654 |
| XmiI | GTMKAC | 1 cut(s) | 193 |
| XspI | CTAG | 3 cut(s) | 12, 62, 146 |