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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 538 |
| AccII | CGCG | 1 cut(s) | 453 |
| AccIII | TCCGGA | 1 cut(s) | 433 |
| AciI | CCGC | 2 cut(s) | 145, 471 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AdeI | CACNNNGTG | 1 cut(s) | 720 |
| AfaI | GTAC | 2 cut(s) | 32, 324 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 641 |
| AgsI | TTSAA | 1 cut(s) | 160 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 4 cut(s) | 346, 356, 661, 712 |
| AluI | AGCT | 4 cut(s) | 346, 356, 661, 712 |
| Alw21I | GWGCWC | 2 cut(s) | 348, 663 |
| Alw26I | GTCTC | 3 cut(s) | 76, 280, 403 |
| Aor13HI | TCCGGA | 1 cut(s) | 433 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AsuHPI | GGTGA | 1 cut(s) | 669 |
| BaeGI | GKGCMC | 2 cut(s) | 522, 648 |
| BanI | GGYRCC | 1 cut(s) | 538 |
| BanII | GRGCYC | 2 cut(s) | 348, 663 |
| BauI | CACGAG | 1 cut(s) | 662 |
| BbsI | GAAGAC | 1 cut(s) | 57 |
| Bbv12I | GWGCWC | 2 cut(s) | 348, 663 |
| BccI | CCATC | 3 cut(s) | 126, 280, 566 |
| BciVI | GTATCC | 1 cut(s) | 642 |
| BcoDI | GTCTC | 3 cut(s) | 76, 280, 403 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BfmI | CTRYAG | 1 cut(s) | 318 |
| BfuI | GTATCC | 1 cut(s) | 642 |
| BmiI | GGNNCC | 2 cut(s) | 481, 540 |
| BmsI | GCATC | 1 cut(s) | 226 |
| BpiI | GAAGAC | 1 cut(s) | 57 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaWI | WCCGGW | 2 cut(s) | 433, 634 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 641 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseAI | TCCGGA | 1 cut(s) | 433 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseGI | GGATG | 3 cut(s) | 22, 384, 558 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 641 |
| BseMII | CTCAG | 1 cut(s) | 590 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 2 cut(s) | 522, 648 |
| Bsh1236I | CGCG | 1 cut(s) | 453 |
| BshNI | GGYRCC | 1 cut(s) | 538 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 2 cut(s) | 348, 663 |
| BsiSI | CCGG | 2 cut(s) | 434, 635 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 641 |
| BsmAI | GTCTC | 3 cut(s) | 76, 280, 403 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 4 cut(s) | 348, 522, 648, 663 |
| Bsp13I | TCCGGA | 1 cut(s) | 433 |
| BspACI | CCGC | 2 cut(s) | 145, 471 |
| BspCNI | CTCAG | 1 cut(s) | 591 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspEI | TCCGGA | 1 cut(s) | 433 |
| BspFNI | CGCG | 1 cut(s) | 453 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 481, 540 |
| BspT107I | GGYRCC | 1 cut(s) | 538 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssSI | CACGAG | 1 cut(s) | 662 |
| Bst2BI | CACGAG | 1 cut(s) | 662 |
| Bst6I | CTCTTC | 1 cut(s) | 480 |
| BstDEI | CTNAG | 3 cut(s) | 294, 551, 599 |
| BstF5I | GGATG | 3 cut(s) | 22, 384, 558 |
| BstFNI | CGCG | 1 cut(s) | 453 |
| BstMAI | GTCTC | 3 cut(s) | 76, 280, 403 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 709 |
| BstSFI | CTRYAG | 1 cut(s) | 318 |
| BstSLI | GKGCMC | 2 cut(s) | 522, 648 |
| BstUI | CGCG | 1 cut(s) | 453 |
| BstV2I | GAAGAC | 1 cut(s) | 57 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuI | GTATCC | 1 cut(s) | 642 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 3 cut(s) | 22, 384, 558 |
| BtsIMutI | CAGTG | 1 cut(s) | 596 |
| CciI | TCATGA | 1 cut(s) | 340 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CseI | GACGC | 1 cut(s) | 577 |
| Csp6I | GTAC | 2 cut(s) | 31, 323 |
| CviAII | CATG | 2 cut(s) | 341, 377 |
| CviJI | RGCY | 7 cut(s) | 64, 141, 346, 356, 557, 661, 712 |
| CviKI_1 | RGCY | 7 cut(s) | 64, 141, 346, 356, 557, 661, 712 |
| CviQI | GTAC | 2 cut(s) | 31, 323 |
| DdeI | CTNAG | 3 cut(s) | 294, 551, 599 |
| DraIII | CACNNNGTG | 1 cut(s) | 720 |
| Eam1104I | CTCTTC | 1 cut(s) | 480 |
| EarI | CTCTTC | 1 cut(s) | 480 |
| Ecl136II | GAGCTC | 2 cut(s) | 346, 661 |
| Eco24I | GRGCYC | 2 cut(s) | 348, 663 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco32I | GATATC | 1 cut(s) | 229 |
| Eco53kI | GAGCTC | 2 cut(s) | 346, 661 |
| EcoICRI | GAGCTC | 2 cut(s) | 346, 661 |
| EcoRV | GATATC | 1 cut(s) | 229 |
| EcoT38I | GRGCYC | 2 cut(s) | 348, 663 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 2 cut(s) | 344, 380 |
| FatI | CATG | 2 cut(s) | 340, 376 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 3 cut(s) | 29, 371, 545 |
| FriOI | GRGCYC | 2 cut(s) | 348, 663 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HapII | CCGG | 2 cut(s) | 434, 635 |
| HgaI | GACGC | 1 cut(s) | 577 |
| Hin1II | CATG | 2 cut(s) | 344, 380 |
| HincII | GTYRAC | 1 cut(s) | 493 |
| HindII | GTYRAC | 1 cut(s) | 493 |
| HinfI | GANTC | 7 cut(s) | 4, 20, 104, 256, 306, 437, 595 |
| HpaII | CCGG | 2 cut(s) | 434, 635 |
| HphI | GGTGA | 1 cut(s) | 669 |
| Hpy166II | GTNNAC | 1 cut(s) | 493 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 600 |
| Hpy188III | TCNNGA | 5 cut(s) | 341, 408, 434, 620, 664 |
| Hpy8I | GTNNAC | 1 cut(s) | 493 |
| HpyAV | CCTTC | 2 cut(s) | 54, 277 |
| HpyCH4IV | ACGT | 1 cut(s) | 96 |
| HpyCH4V | TGCA | 2 cut(s) | 281, 686 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 709 |
| HpyF3I | CTNAG | 3 cut(s) | 294, 551, 599 |
| HpySE526I | ACGT | 1 cut(s) | 96 |
| Hsp92II | CATG | 2 cut(s) | 344, 380 |
| Kpn2I | TCCGGA | 1 cut(s) | 433 |
| LmnI | GCTCC | 1 cut(s) | 30 |
| LpnPI | CCDG | 7 cut(s) | 41, 52, 70, 318, 447, 501, 648 |
| LweI | GCATC | 1 cut(s) | 226 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeII | ACGT | 1 cut(s) | 96 |
| MaeIII | GTNAC | 3 cut(s) | 101, 454, 675 |
| MboII | GAAGA | 5 cut(s) | 62, 92, 406, 497, 679 |
| MhlI | GDGCHC | 4 cut(s) | 348, 522, 648, 663 |
| MluCI | AATT | 5 cut(s) | 165, 212, 403, 442, 671 |
| MlyI | GAGTC | 4 cut(s) | 98, 250, 446, 604 |
| MnlI | CCTC | 7 cut(s) | 152, 246, 481, 499, 505, 593, 690 |
| MroI | TCCGGA | 1 cut(s) | 433 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 3 cut(s) | 117, 198, 206 |
| MslI | CAYNNNNRTG | 4 cut(s) | 15, 389, 533, 563 |
| MspI | CCGG | 2 cut(s) | 434, 635 |
| MvnI | CGCG | 1 cut(s) | 453 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 709 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NlaIII | CATG | 2 cut(s) | 344, 380 |
| NlaIV | GGNNCC | 2 cut(s) | 481, 540 |
| NmuCI | GTSAC | 2 cut(s) | 101, 675 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 2 cut(s) | 20, 306 |
| PleI | GAGTC | 4 cut(s) | 98, 250, 445, 603 |
| PpsI | GAGTC | 4 cut(s) | 98, 250, 445, 603 |
| Psp124BI | GAGCTC | 2 cut(s) | 348, 663 |
| PspN4I | GGNNCC | 2 cut(s) | 481, 540 |
| RsaI | GTAC | 2 cut(s) | 32, 324 |
| RsaNI | GTAC | 2 cut(s) | 31, 323 |
| RseI | CAYNNNNRTG | 4 cut(s) | 15, 389, 533, 563 |
| SacI | GAGCTC | 2 cut(s) | 348, 663 |
| SaqAI | TTAA | 3 cut(s) | 117, 198, 206 |
| SchI | GAGTC | 4 cut(s) | 98, 250, 446, 604 |
| SduI | GDGCHC | 4 cut(s) | 348, 522, 648, 663 |
| SetI | ASST | 8 cut(s) | 99, 269, 348, 358, 492, 663, 682, 714 |
| SfaNI | GCATC | 1 cut(s) | 226 |
| SfcI | CTRYAG | 1 cut(s) | 318 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 15, 389, 533, 563 |
| Sse9I | AATT | 5 cut(s) | 165, 212, 403, 442, 671 |
| SsiI | CCGC | 2 cut(s) | 145, 471 |
| SspI | AATATT | 1 cut(s) | 694 |
| SspMI | CTAG | 1 cut(s) | 122 |
| SstI | GAGCTC | 2 cut(s) | 348, 663 |
| TaiI | ACGT | 1 cut(s) | 99 |
| TaqI | TCGA | 4 cut(s) | 78, 304, 309, 407 |
| TasI | AATT | 5 cut(s) | 165, 212, 403, 442, 671 |
| TatI | WGTACW | 1 cut(s) | 322 |
| TfiI | GAWTC | 2 cut(s) | 20, 306 |
| Tru1I | TTAA | 3 cut(s) | 117, 198, 206 |
| Tru9I | TTAA | 3 cut(s) | 117, 198, 206 |
| TscAI | CASTG | 1 cut(s) | 596 |
| TseFI | GTSAC | 2 cut(s) | 101, 675 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 675 |
| TspDTI | ATGAA | 4 cut(s) | 56, 329, 374, 626 |
| TspGWI | ACGGA | 2 cut(s) | 89, 492 |
| TspRI | CASTG | 1 cut(s) | 596 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 1 cut(s) | 122 |