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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| Acc16I | TGCGCA | 1 cut(s) | 1239 |
| AccB1I | GGYRCC | 2 cut(s) | 468, 626 |
| AciI | CCGC | 4 cut(s) | 145, 279, 768, 883 |
| AclWI | GGATC | 2 cut(s) | 405, 1037 |
| AcoI | YGGCCR | 1 cut(s) | 613 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcyI | GRCGYC | 2 cut(s) | 469, 657 |
| AdeI | CACNNNGTG | 1 cut(s) | 808 |
| AfaI | GTAC | 3 cut(s) | 32, 454, 1179 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 464, 729, 902, 965, 1110 |
| AgsI | TTSAA | 4 cut(s) | 80, 160, 664, 992 |
| AhlI | ACTAGT | 1 cut(s) | 1172 |
| AjiI | CACGTC | 2 cut(s) | 127, 1188 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 6 cut(s) | 346, 356, 749, 800, 1109, 1156 |
| AluI | AGCT | 6 cut(s) | 346, 356, 749, 800, 1109, 1156 |
| Alw21I | GWGCWC | 3 cut(s) | 348, 751, 1158 |
| Alw26I | GTCTC | 5 cut(s) | 76, 280, 941, 1038, 1178 |
| AlwI | GGATC | 2 cut(s) | 405, 1037 |
| AoxI | GGCC | 2 cut(s) | 613, 1101 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 189, 1137 |
| AspLEI | GCGC | 3 cut(s) | 471, 670, 1240 |
| AspS9I | GGNCC | 2 cut(s) | 515, 1102 |
| AsuHPI | GGTGA | 1 cut(s) | 757 |
| AvaII | GGWCC | 1 cut(s) | 515 |
| BaeGI | GKGCMC | 1 cut(s) | 736 |
| BalI | TGGCCA | 1 cut(s) | 615 |
| BanI | GGYRCC | 2 cut(s) | 468, 626 |
| BanII | GRGCYC | 3 cut(s) | 348, 751, 1158 |
| BauI | CACGAG | 2 cut(s) | 750, 1127 |
| BbsI | GAAGAC | 3 cut(s) | 57, 260, 946 |
| Bbv12I | GWGCWC | 3 cut(s) | 348, 751, 1158 |
| BccI | CCATC | 2 cut(s) | 654, 967 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BciVI | GTATCC | 3 cut(s) | 490, 730, 1107 |
| BcoDI | GTCTC | 5 cut(s) | 76, 280, 941, 1038, 1178 |
| BcuI | ACTAGT | 1 cut(s) | 1172 |
| BfaI | CTAG | 6 cut(s) | 122, 836, 902, 965, 1110, 1173 |
| BfmI | CTRYAG | 1 cut(s) | 318 |
| BfoI | RGCGCY | 2 cut(s) | 472, 671 |
| BfuI | GTATCC | 3 cut(s) | 490, 730, 1107 |
| BglII | AGATCT | 1 cut(s) | 832 |
| Bme18I | GGWCC | 1 cut(s) | 515 |
| BmgBI | CACGTC | 2 cut(s) | 127, 1188 |
| BmgT120I | GGNCC | 2 cut(s) | 515, 1102 |
| BmiI | GGNNCC | 4 cut(s) | 470, 628, 1104, 1134 |
| BmsI | GCATC | 1 cut(s) | 122 |
| BpiI | GAAGAC | 3 cut(s) | 57, 260, 946 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1066, 1098 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BpuEI | CTTGAG | 1 cut(s) | 1163 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaAI | YACGTR | 1 cut(s) | 1118 |
| BsaHI | GRCGYC | 2 cut(s) | 469, 657 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 464, 729, 902, 965, 1110 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| Bse3DI | GCAATG | 2 cut(s) | 246, 281 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseGI | GGATG | 1 cut(s) | 384 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 464, 729, 902, 965, 1110 |
| BseMI | GCAATG | 2 cut(s) | 246, 281 |
| BseMII | CTCAG | 1 cut(s) | 505 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 1 cut(s) | 736 |
| BseYI | CCCAGC | 1 cut(s) | 1105 |
| BshFI | GGCC | 2 cut(s) | 615, 1103 |
| BshNI | GGYRCC | 2 cut(s) | 468, 626 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 3 cut(s) | 348, 751, 1158 |
| BslFI | GGGAC | 1 cut(s) | 1007 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 464, 729, 902, 965, 1110 |
| BsmAI | GTCTC | 5 cut(s) | 76, 280, 941, 1038, 1178 |
| BsmBI | CGTCTC | 2 cut(s) | 280, 1178 |
| BsmFI | GGGAC | 1 cut(s) | 1007 |
| BsnI | GGCC | 2 cut(s) | 615, 1103 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 4 cut(s) | 348, 736, 751, 1158 |
| Bsp1407I | TGTACA | 1 cut(s) | 1177 |
| Bsp143I | GATC | 6 cut(s) | 228, 410, 820, 832, 907, 1042 |
| BspACI | CCGC | 4 cut(s) | 145, 279, 768, 883 |
| BspANI | GGCC | 2 cut(s) | 615, 1103 |
| BspCNI | CTCAG | 1 cut(s) | 504 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 4 cut(s) | 470, 628, 1104, 1134 |
| BspMAI | CTGCAG | 1 cut(s) | 322 |
| BspPI | GGATC | 2 cut(s) | 405, 1037 |
| BspT107I | GGYRCC | 2 cut(s) | 468, 626 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrDI | GCAATG | 2 cut(s) | 246, 281 |
| BsrGI | TGTACA | 1 cut(s) | 1177 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssMI | GATC | 6 cut(s) | 228, 410, 820, 832, 907, 1042 |
| BssNI | GRCGYC | 2 cut(s) | 469, 657 |
| BssSI | CACGAG | 2 cut(s) | 750, 1127 |
| Bst2BI | CACGAG | 2 cut(s) | 750, 1127 |
| Bst4CI | ACNGT | 1 cut(s) | 952 |
| Bst6I | CTCTTC | 1 cut(s) | 568 |
| BstACI | GRCGYC | 2 cut(s) | 469, 657 |
| BstAUI | TGTACA | 1 cut(s) | 1177 |
| BstBAI | YACGTR | 1 cut(s) | 1118 |
| BstC8I | GCNNGC | 1 cut(s) | 883 |
| BstDEI | CTNAG | 3 cut(s) | 294, 491, 687 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 462 |
| BstF5I | GGATG | 1 cut(s) | 384 |
| BstH2I | RGCGCY | 2 cut(s) | 472, 671 |
| BstHHI | GCGC | 3 cut(s) | 471, 670, 1240 |
| BstKTI | GATC | 6 cut(s) | 231, 413, 823, 835, 910, 1045 |
| BstMAI | GTCTC | 5 cut(s) | 76, 280, 941, 1038, 1178 |
| BstMBI | GATC | 6 cut(s) | 228, 410, 820, 832, 907, 1042 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 475, 565, 665, 776, 797 |
| BstNSI | RCATGY | 1 cut(s) | 924 |
| BstSFI | CTRYAG | 1 cut(s) | 318 |
| BstSLI | GKGCMC | 1 cut(s) | 736 |
| BstV2I | GAAGAC | 3 cut(s) | 57, 260, 946 |
| BstX2I | RGATCY | 2 cut(s) | 410, 832 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 623 |
| BstYI | RGATCY | 2 cut(s) | 410, 832 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuI | GTATCC | 3 cut(s) | 490, 730, 1107 |
| BsuRI | GGCC | 2 cut(s) | 615, 1103 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtgZI | GCGATG | 1 cut(s) | 945 |
| BtrI | CACGTC | 2 cut(s) | 127, 1188 |
| BtsCI | GGATG | 1 cut(s) | 384 |
| Cac8I | GCNNGC | 1 cut(s) | 883 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 3 cut(s) | 471, 670, 1240 |
| Cfr13I | GGNCC | 2 cut(s) | 515, 1102 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CseI | GACGC | 1 cut(s) | 665 |
| Csp6I | GTAC | 3 cut(s) | 31, 453, 1178 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1057, 1092 |
| CviQI | GTAC | 3 cut(s) | 31, 453, 1178 |
| DdeI | CTNAG | 3 cut(s) | 294, 491, 687 |
| DinI | GGCGCC | 1 cut(s) | 470 |
| DpnI | GATC | 6 cut(s) | 230, 412, 822, 834, 909, 1044 |
| DpnII | GATC | 6 cut(s) | 228, 410, 820, 832, 907, 1042 |
| DraIII | CACNNNGTG | 1 cut(s) | 808 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| EaeI | YGGCCR | 1 cut(s) | 613 |
| Eam1104I | CTCTTC | 1 cut(s) | 568 |
| EarI | CTCTTC | 1 cut(s) | 568 |
| Ecl136II | GAGCTC | 3 cut(s) | 346, 749, 1156 |
| Eco24I | GRGCYC | 3 cut(s) | 348, 751, 1158 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco32I | GATATC | 1 cut(s) | 1264 |
| Eco47I | GGWCC | 1 cut(s) | 515 |
| Eco53kI | GAGCTC | 3 cut(s) | 346, 749, 1156 |
| EcoICRI | GAGCTC | 3 cut(s) | 346, 749, 1156 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 462 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoRV | GATATC | 1 cut(s) | 1264 |
| EcoT38I | GRGCYC | 3 cut(s) | 348, 751, 1158 |
| EgeI | GGCGCC | 1 cut(s) | 470 |
| EheI | GGCGCC | 1 cut(s) | 470 |
| Esp3I | CGTCTC | 2 cut(s) | 280, 1178 |
| FaqI | GGGAC | 1 cut(s) | 1007 |
| FauI | CCCGC | 1 cut(s) | 890 |
| FauNDI | CATATG | 1 cut(s) | 235 |
| FokI | GGATG | 1 cut(s) | 371 |
| FriOI | GRGCYC | 3 cut(s) | 348, 751, 1158 |
| FspBI | CTAG | 6 cut(s) | 122, 836, 902, 965, 1110, 1173 |
| FspI | TGCGCA | 1 cut(s) | 1239 |
| GlaI | GCGC | 3 cut(s) | 470, 669, 1239 |
| GsaI | CCCAGC | 1 cut(s) | 1109 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 2 cut(s) | 472, 671 |
| HaeIII | GGCC | 2 cut(s) | 615, 1103 |
| HgaI | GACGC | 1 cut(s) | 665 |
| HhaI | GCGC | 3 cut(s) | 471, 670, 1240 |
| Hin1I | GRCGYC | 2 cut(s) | 469, 657 |
| Hin6I | GCGC | 3 cut(s) | 469, 668, 1238 |
| HinP1I | GCGC | 3 cut(s) | 469, 668, 1238 |
| HincII | GTYRAC | 1 cut(s) | 581 |
| HindII | GTYRAC | 1 cut(s) | 581 |
| HinfI | GANTC | 9 cut(s) | 4, 20, 104, 256, 306, 437, 683, 868, 1253 |
| HphI | GGTGA | 1 cut(s) | 757 |
| Hpy166II | GTNNAC | 2 cut(s) | 581, 1178 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 1258 |
| Hpy8I | GTNNAC | 2 cut(s) | 581, 1178 |
| HpyAV | CCTTC | 2 cut(s) | 54, 670 |
| HpyCH4III | ACNGT | 1 cut(s) | 952 |
| HpyCH4IV | ACGT | 7 cut(s) | 96, 126, 508, 583, 855, 1117, 1187 |
| HpyCH4V | TGCA | 3 cut(s) | 239, 320, 920 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 475, 565, 665, 776, 797 |
| HpyF3I | CTNAG | 3 cut(s) | 294, 491, 687 |
| HpySE526I | ACGT | 7 cut(s) | 96, 126, 508, 583, 855, 1117, 1187 |
| Hsp92I | GRCGYC | 2 cut(s) | 469, 657 |
| HspAI | GCGC | 3 cut(s) | 469, 668, 1238 |
| KasI | GGCGCC | 1 cut(s) | 468 |
| Kzo9I | GATC | 6 cut(s) | 228, 410, 820, 832, 907, 1042 |
| LmnI | GCTCC | 3 cut(s) | 30, 353, 1280 |
| LweI | GCATC | 1 cut(s) | 122 |
| MaeI | CTAG | 6 cut(s) | 122, 836, 902, 965, 1110, 1173 |
| MaeII | ACGT | 7 cut(s) | 96, 126, 508, 583, 855, 1117, 1187 |
| MaeIII | GTNAC | 4 cut(s) | 313, 542, 763, 935 |
| MalI | GATC | 6 cut(s) | 230, 412, 822, 834, 909, 1044 |
| MboI | GATC | 6 cut(s) | 228, 410, 820, 832, 907, 1042 |
| MflI | RGATCY | 2 cut(s) | 410, 832 |
| MhlI | GDGCHC | 4 cut(s) | 348, 736, 751, 1158 |
| MlsI | TGGCCA | 1 cut(s) | 615 |
| MluCI | AATT | 7 cut(s) | 212, 298, 403, 759, 1007, 1165, 1209 |
| MluNI | TGGCCA | 1 cut(s) | 615 |
| Mly113I | GGCGCC | 1 cut(s) | 469 |
| MlyI | GAGTC | 4 cut(s) | 98, 250, 692, 1262 |
| MmeI | TCCRAC | 2 cut(s) | 838, 896 |
| MnlI | CCTC | 9 cut(s) | 152, 458, 557, 569, 589, 593, 619, 681, 1116 |
| Mox20I | TGGCCA | 1 cut(s) | 615 |
| MroXI | GAANNNNTTC | 2 cut(s) | 189, 1137 |
| MscI | TGGCCA | 1 cut(s) | 615 |
| MseI | TTAA | 4 cut(s) | 198, 206, 639, 890 |
| MslI | CAYNNNNRTG | 5 cut(s) | 15, 389, 621, 651, 942 |
| Msp20I | TGGCCA | 1 cut(s) | 615 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 475, 565, 665, 776, 797 |
| NarI | GGCGCC | 1 cut(s) | 469 |
| NdeI | CATATG | 1 cut(s) | 235 |
| NdeII | GATC | 6 cut(s) | 228, 410, 820, 832, 907, 1042 |
| NlaIV | GGNNCC | 4 cut(s) | 470, 628, 1104, 1134 |
| NmuCI | GTSAC | 2 cut(s) | 763, 935 |
| NsbI | TGCGCA | 1 cut(s) | 1239 |
| NspI | RCATGY | 1 cut(s) | 924 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1230 |
| PdmI | GAANNNNTTC | 2 cut(s) | 189, 1137 |
| PfeI | GAWTC | 4 cut(s) | 20, 306, 437, 868 |
| PleI | GAGTC | 4 cut(s) | 98, 250, 691, 1261 |
| PluTI | GGCGCC | 1 cut(s) | 472 |
| PpsI | GAGTC | 4 cut(s) | 98, 250, 691, 1261 |
| Ppu21I | YACGTR | 1 cut(s) | 1118 |
| Psp124BI | GAGCTC | 3 cut(s) | 348, 751, 1158 |
| PspFI | CCCAGC | 1 cut(s) | 1105 |
| PspN4I | GGNNCC | 4 cut(s) | 470, 628, 1104, 1134 |
| PspPI | GGNCC | 2 cut(s) | 515, 1102 |
| PstI | CTGCAG | 1 cut(s) | 322 |
| PsuI | RGATCY | 2 cut(s) | 410, 832 |
| RsaI | GTAC | 3 cut(s) | 32, 454, 1179 |
| RsaNI | GTAC | 3 cut(s) | 31, 453, 1178 |
| RseI | CAYNNNNRTG | 5 cut(s) | 15, 389, 621, 651, 942 |
| SacI | GAGCTC | 3 cut(s) | 348, 751, 1158 |
| SaqAI | TTAA | 4 cut(s) | 198, 206, 639, 890 |
| Sau3AI | GATC | 6 cut(s) | 228, 410, 820, 832, 907, 1042 |
| Sau96I | GGNCC | 2 cut(s) | 515, 1102 |
| SchI | GAGTC | 4 cut(s) | 98, 250, 692, 1262 |
| SduI | GDGCHC | 4 cut(s) | 348, 736, 751, 1158 |
| SfaNI | GCATC | 1 cut(s) | 122 |
| SfcI | CTRYAG | 1 cut(s) | 318 |
| SfoI | GGCGCC | 1 cut(s) | 470 |
| SinI | GGWCC | 1 cut(s) | 515 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 15, 389, 621, 651, 942 |
| SmlI | CTYRAG | 1 cut(s) | 1142 |
| SmoI | CTYRAG | 1 cut(s) | 1142 |
| SpeI | ACTAGT | 1 cut(s) | 1172 |
| Sse9I | AATT | 7 cut(s) | 212, 298, 403, 759, 1007, 1165, 1209 |
| SsiI | CCGC | 4 cut(s) | 145, 279, 768, 883 |
| SspDI | GGCGCC | 1 cut(s) | 468 |
| SspI | AATATT | 1 cut(s) | 988 |
| SspMI | CTAG | 6 cut(s) | 122, 836, 902, 965, 1110, 1173 |
| SstI | GAGCTC | 3 cut(s) | 348, 751, 1158 |
| TaaI | ACNGT | 1 cut(s) | 952 |
| TaiI | ACGT | 7 cut(s) | 99, 129, 511, 586, 858, 1120, 1190 |
| TaqI | TCGA | 6 cut(s) | 304, 309, 407, 709, 1041, 1266 |
| TasI | AATT | 7 cut(s) | 212, 298, 403, 759, 1007, 1165, 1209 |
| TatI | WGTACW | 1 cut(s) | 1177 |
| TfiI | GAWTC | 4 cut(s) | 20, 306, 437, 868 |
| Tru1I | TTAA | 4 cut(s) | 198, 206, 639, 890 |
| Tru9I | TTAA | 4 cut(s) | 198, 206, 639, 890 |
| TseFI | GTSAC | 2 cut(s) | 763, 935 |
| Tsp45I | GTSAC | 2 cut(s) | 763, 935 |
| TspDTI | ATGAA | 6 cut(s) | 56, 60, 329, 374, 1020, 1176 |
| TspGWI | ACGGA | 2 cut(s) | 403, 1267 |
| VpaK11BI | GGWCC | 1 cut(s) | 515 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 462 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XceI | RCATGY | 1 cut(s) | 924 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 63 |
| XmnI | GAANNNNTTC | 2 cut(s) | 189, 1137 |
| XspI | CTAG | 6 cut(s) | 122, 836, 902, 965, 1110, 1173 |