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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 486 |
| AccB1I | GGYRCC | 1 cut(s) | 599 |
| AciI | CCGC | 2 cut(s) | 238, 740 |
| AcoI | YGGCCR | 1 cut(s) | 586 |
| AcyI | GRCGYC | 1 cut(s) | 600 |
| AdeI | CACNNNGTG | 1 cut(s) | 780 |
| AfaI | GTAC | 2 cut(s) | 200, 720 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 371 |
| AgsI | TTSAA | 2 cut(s) | 253, 637 |
| AluBI | AGCT | 4 cut(s) | 107, 439, 449, 772 |
| AluI | AGCT | 4 cut(s) | 107, 439, 449, 772 |
| Alw21I | GWGCWC | 1 cut(s) | 441 |
| Alw26I | GTCTC | 2 cut(s) | 134, 373 |
| AoxI | GGCC | 2 cut(s) | 45, 586 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 282 |
| AspLEI | GCGC | 2 cut(s) | 602, 643 |
| AspS9I | GGNCC | 1 cut(s) | 488 |
| AsuHPI | GGTGA | 1 cut(s) | 729 |
| AvaII | GGWCC | 1 cut(s) | 488 |
| BalI | TGGCCA | 1 cut(s) | 588 |
| BanI | GGYRCC | 1 cut(s) | 599 |
| BanII | GRGCYC | 2 cut(s) | 441, 708 |
| BbsI | GAAGAC | 2 cut(s) | 225, 353 |
| Bbv12I | GWGCWC | 1 cut(s) | 441 |
| BccI | CCATC | 4 cut(s) | 44, 167, 373, 563 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 392, 426 |
| BcoDI | GTCTC | 2 cut(s) | 134, 373 |
| BfaI | CTAG | 3 cut(s) | 59, 78, 808 |
| BfmI | CTRYAG | 1 cut(s) | 411 |
| BfoI | RGCGCY | 2 cut(s) | 603, 644 |
| BmcAI | AGTACT | 1 cut(s) | 720 |
| Bme18I | GGWCC | 1 cut(s) | 488 |
| BmgT120I | GGNCC | 1 cut(s) | 488 |
| BmiI | GGNNCC | 3 cut(s) | 233, 542, 601 |
| BmsI | GCATC | 3 cut(s) | 46, 319, 460 |
| BpiI | GAAGAC | 2 cut(s) | 225, 353 |
| BpmI | CTGGAG | 2 cut(s) | 179, 208 |
| BpuEI | CTTGAG | 2 cut(s) | 26, 56 |
| Bsa29I | ATCGAT | 1 cut(s) | 402 |
| BsaHI | GRCGYC | 1 cut(s) | 600 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 371 |
| Bse1I | ACTGG | 1 cut(s) | 196 |
| Bse3DI | GCAATG | 1 cut(s) | 32 |
| BseCI | ATCGAT | 1 cut(s) | 402 |
| BseGI | GGATG | 3 cut(s) | 162, 190, 475 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BseMI | GCAATG | 1 cut(s) | 32 |
| BseMII | CTCAG | 1 cut(s) | 651 |
| BseNI | ACTGG | 1 cut(s) | 196 |
| BseRI | GAGGAG | 1 cut(s) | 224 |
| BshFI | GGCC | 2 cut(s) | 47, 588 |
| BshNI | GGYRCC | 1 cut(s) | 599 |
| BshVI | ATCGAT | 1 cut(s) | 402 |
| BsiHKAI | GWGCWC | 1 cut(s) | 441 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BsmAI | GTCTC | 2 cut(s) | 134, 373 |
| BsmBI | CGTCTC | 1 cut(s) | 373 |
| BsnI | GGCC | 2 cut(s) | 47, 588 |
| Bsp1286I | GDGCHC | 2 cut(s) | 441, 708 |
| Bsp143I | GATC | 2 cut(s) | 321, 804 |
| BspACI | CCGC | 2 cut(s) | 238, 740 |
| BspANI | GGCC | 2 cut(s) | 47, 588 |
| BspCNI | CTCAG | 1 cut(s) | 652 |
| BspDI | ATCGAT | 1 cut(s) | 402 |
| BspHI | TCATGA | 1 cut(s) | 723 |
| BspLI | GGNNCC | 3 cut(s) | 233, 542, 601 |
| BspMAI | CTGCAG | 1 cut(s) | 415 |
| BspT107I | GGYRCC | 1 cut(s) | 599 |
| BsrDI | GCAATG | 1 cut(s) | 32 |
| BsrI | ACTGG | 1 cut(s) | 196 |
| BssMI | GATC | 2 cut(s) | 321, 804 |
| BssNI | GRCGYC | 1 cut(s) | 600 |
| Bst4CI | ACNGT | 1 cut(s) | 97 |
| Bst6I | CTCTTC | 1 cut(s) | 541 |
| BstACI | GRCGYC | 1 cut(s) | 600 |
| BstC8I | GCNNGC | 1 cut(s) | 105 |
| BstDEI | CTNAG | 3 cut(s) | 136, 612, 660 |
| BstF5I | GGATG | 3 cut(s) | 162, 190, 475 |
| BstH2I | RGCGCY | 2 cut(s) | 603, 644 |
| BstHHI | GCGC | 2 cut(s) | 602, 643 |
| BstKTI | GATC | 2 cut(s) | 324, 807 |
| BstMAI | GTCTC | 2 cut(s) | 134, 373 |
| BstMBI | GATC | 2 cut(s) | 321, 804 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 638, 748, 769 |
| BstNSI | RCATGY | 1 cut(s) | 91 |
| BstSFI | CTRYAG | 1 cut(s) | 411 |
| BstV2I | GAAGAC | 2 cut(s) | 225, 353 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 596 |
| Bsu15I | ATCGAT | 1 cut(s) | 402 |
| BsuRI | GGCC | 2 cut(s) | 47, 588 |
| BsuTUI | ATCGAT | 1 cut(s) | 402 |
| BtgZI | GCGATG | 1 cut(s) | 347 |
| BtsCI | GGATG | 3 cut(s) | 162, 190, 475 |
| Cac8I | GCNNGC | 1 cut(s) | 105 |
| CciI | TCATGA | 1 cut(s) | 723 |
| CfoI | GCGC | 2 cut(s) | 602, 643 |
| Cfr13I | GGNCC | 1 cut(s) | 488 |
| ClaI | ATCGAT | 1 cut(s) | 402 |
| CseI | GACGC | 1 cut(s) | 638 |
| Csp6I | GTAC | 2 cut(s) | 199, 719 |
| CviAII | CATG | 3 cut(s) | 88, 590, 724 |
| CviQI | GTAC | 2 cut(s) | 199, 719 |
| DdeI | CTNAG | 3 cut(s) | 136, 612, 660 |
| DinI | GGCGCC | 1 cut(s) | 601 |
| DpnI | GATC | 2 cut(s) | 323, 806 |
| DpnII | GATC | 2 cut(s) | 321, 804 |
| DraIII | CACNNNGTG | 1 cut(s) | 780 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 486 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 486 |
| EaeI | YGGCCR | 1 cut(s) | 586 |
| Eam1104I | CTCTTC | 1 cut(s) | 541 |
| EarI | CTCTTC | 1 cut(s) | 541 |
| Ecl136II | GAGCTC | 1 cut(s) | 439 |
| Eco24I | GRGCYC | 2 cut(s) | 441, 708 |
| Eco47I | GGWCC | 1 cut(s) | 488 |
| Eco53kI | GAGCTC | 1 cut(s) | 439 |
| EcoICRI | GAGCTC | 1 cut(s) | 439 |
| EcoT38I | GRGCYC | 2 cut(s) | 441, 708 |
| EgeI | GGCGCC | 1 cut(s) | 601 |
| EheI | GGCGCC | 1 cut(s) | 601 |
| Esp3I | CGTCTC | 1 cut(s) | 373 |
| FaeI | CATG | 3 cut(s) | 91, 593, 727 |
| FatI | CATG | 3 cut(s) | 87, 589, 723 |
| FauNDI | CATATG | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 149, 197, 482 |
| FriOI | GRGCYC | 2 cut(s) | 441, 708 |
| FspBI | CTAG | 3 cut(s) | 59, 78, 808 |
| GlaI | GCGC | 2 cut(s) | 601, 642 |
| GsuI | CTGGAG | 2 cut(s) | 179, 208 |
| HaeII | RGCGCY | 2 cut(s) | 603, 644 |
| HaeIII | GGCC | 2 cut(s) | 47, 588 |
| HgaI | GACGC | 1 cut(s) | 638 |
| HhaI | GCGC | 2 cut(s) | 602, 643 |
| Hin1I | GRCGYC | 1 cut(s) | 600 |
| Hin1II | CATG | 3 cut(s) | 91, 593, 727 |
| Hin6I | GCGC | 2 cut(s) | 600, 641 |
| HinP1I | GCGC | 2 cut(s) | 600, 641 |
| HincII | GTYRAC | 1 cut(s) | 554 |
| HindII | GTYRAC | 1 cut(s) | 554 |
| HinfI | GANTC | 8 cut(s) | 54, 67, 172, 188, 221, 349, 399, 616 |
| HphI | GGTGA | 1 cut(s) | 729 |
| Hpy166II | GTNNAC | 1 cut(s) | 554 |
| Hpy188I | TCNGA | 2 cut(s) | 277, 661 |
| Hpy188III | TCNNGA | 6 cut(s) | 225, 263, 372, 477, 680, 724 |
| Hpy8I | GTNNAC | 1 cut(s) | 554 |
| HpyAV | CCTTC | 1 cut(s) | 222 |
| HpyCH4III | ACNGT | 1 cut(s) | 97 |
| HpyCH4IV | ACGT | 2 cut(s) | 481, 556 |
| HpyCH4V | TGCA | 2 cut(s) | 37, 413 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 638, 748, 769 |
| HpyF3I | CTNAG | 3 cut(s) | 136, 612, 660 |
| HpySE526I | ACGT | 2 cut(s) | 481, 556 |
| Hsp92I | GRCGYC | 1 cut(s) | 600 |
| Hsp92II | CATG | 3 cut(s) | 91, 593, 727 |
| HspAI | GCGC | 2 cut(s) | 600, 641 |
| KasI | GGCGCC | 1 cut(s) | 599 |
| Kzo9I | GATC | 2 cut(s) | 321, 804 |
| LmnI | GCTCC | 4 cut(s) | 34, 198, 237, 446 |
| LweI | GCATC | 3 cut(s) | 46, 319, 460 |
| MaeI | CTAG | 3 cut(s) | 59, 78, 808 |
| MaeII | ACGT | 2 cut(s) | 481, 556 |
| MaeIII | GTNAC | 4 cut(s) | 5, 406, 515, 735 |
| MalI | GATC | 2 cut(s) | 323, 806 |
| MboI | GATC | 2 cut(s) | 321, 804 |
| MboII | GAAGA | 5 cut(s) | 227, 230, 358, 558, 739 |
| MhlI | GDGCHC | 2 cut(s) | 441, 708 |
| MlsI | TGGCCA | 1 cut(s) | 588 |
| MluCI | AATT | 3 cut(s) | 17, 305, 731 |
| MluNI | TGGCCA | 1 cut(s) | 588 |
| Mly113I | GGCGCC | 1 cut(s) | 600 |
| MlyI | GAGTC | 4 cut(s) | 166, 215, 343, 625 |
| MmeI | TCCRAC | 1 cut(s) | 424 |
| MnlI | CCTC | 5 cut(s) | 245, 542, 566, 592, 654 |
| Mox20I | TGGCCA | 1 cut(s) | 588 |
| MroXI | GAANNNNTTC | 1 cut(s) | 282 |
| MscI | TGGCCA | 1 cut(s) | 588 |
| MseI | TTAA | 4 cut(s) | 291, 299, 432, 795 |
| MslI | CAYNNNNRTG | 4 cut(s) | 167, 183, 594, 624 |
| Msp20I | TGGCCA | 1 cut(s) | 588 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 638, 748, 769 |
| NarI | GGCGCC | 1 cut(s) | 600 |
| NdeI | CATATG | 1 cut(s) | 180 |
| NdeII | GATC | 2 cut(s) | 321, 804 |
| NlaIII | CATG | 3 cut(s) | 91, 593, 727 |
| NlaIV | GGNNCC | 3 cut(s) | 233, 542, 601 |
| NmuCI | GTSAC | 1 cut(s) | 735 |
| NspI | RCATGY | 1 cut(s) | 91 |
| PagI | TCATGA | 1 cut(s) | 723 |
| PdmI | GAANNNNTTC | 1 cut(s) | 282 |
| PfeI | GAWTC | 4 cut(s) | 54, 67, 188, 399 |
| PleI | GAGTC | 4 cut(s) | 166, 215, 343, 624 |
| PluTI | GGCGCC | 1 cut(s) | 603 |
| PpsI | GAGTC | 4 cut(s) | 166, 215, 343, 624 |
| Psp124BI | GAGCTC | 1 cut(s) | 441 |
| PspN4I | GGNNCC | 3 cut(s) | 233, 542, 601 |
| PspPI | GGNCC | 1 cut(s) | 488 |
| PstI | CTGCAG | 1 cut(s) | 415 |
| RsaI | GTAC | 2 cut(s) | 200, 720 |
| RsaNI | GTAC | 2 cut(s) | 199, 719 |
| RseI | CAYNNNNRTG | 4 cut(s) | 167, 183, 594, 624 |
| SacI | GAGCTC | 1 cut(s) | 441 |
| SaqAI | TTAA | 4 cut(s) | 291, 299, 432, 795 |
| Sau3AI | GATC | 2 cut(s) | 321, 804 |
| Sau96I | GGNCC | 1 cut(s) | 488 |
| ScaI | AGTACT | 1 cut(s) | 720 |
| SchI | GAGTC | 4 cut(s) | 166, 215, 343, 625 |
| SduI | GDGCHC | 2 cut(s) | 441, 708 |
| SfaNI | GCATC | 3 cut(s) | 46, 319, 460 |
| SfcI | CTRYAG | 1 cut(s) | 411 |
| SfoI | GGCGCC | 1 cut(s) | 601 |
| SinI | GGWCC | 1 cut(s) | 488 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 167, 183, 594, 624 |
| SmlI | CTYRAG | 2 cut(s) | 41, 71 |
| SmoI | CTYRAG | 2 cut(s) | 41, 71 |
| Sse9I | AATT | 3 cut(s) | 17, 305, 731 |
| SsiI | CCGC | 2 cut(s) | 238, 740 |
| SspDI | GGCGCC | 1 cut(s) | 599 |
| SspMI | CTAG | 3 cut(s) | 59, 78, 808 |
| SstI | GAGCTC | 1 cut(s) | 441 |
| TaaI | ACNGT | 1 cut(s) | 97 |
| TaiI | ACGT | 2 cut(s) | 484, 559 |
| TaqI | TCGA | 3 cut(s) | 397, 402, 681 |
| TasI | AATT | 3 cut(s) | 17, 305, 731 |
| TatI | WGTACW | 1 cut(s) | 718 |
| TfiI | GAWTC | 4 cut(s) | 54, 67, 188, 399 |
| Tru1I | TTAA | 4 cut(s) | 291, 299, 432, 795 |
| Tru9I | TTAA | 4 cut(s) | 291, 299, 432, 795 |
| TseFI | GTSAC | 1 cut(s) | 735 |
| Tsp45I | GTSAC | 1 cut(s) | 735 |
| TspDTI | ATGAA | 6 cut(s) | 224, 228, 317, 404, 467, 740 |
| TspGWI | ACGGA | 1 cut(s) | 553 |
| VpaK11BI | GGWCC | 1 cut(s) | 488 |
| XceI | RCATGY | 1 cut(s) | 91 |
| XmnI | GAANNNNTTC | 1 cut(s) | 282 |
| XspI | CTAG | 3 cut(s) | 59, 78, 808 |
| ZrmI | AGTACT | 1 cut(s) | 720 |