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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 707 |
| AciI | CCGC | 2 cut(s) | 128, 280 |
| AcoI | YGGCCR | 1 cut(s) | 8 |
| AcsI | RAATTY | 1 cut(s) | 868 |
| AcyI | GRCGYC | 2 cut(s) | 609, 783 |
| AfaI | GTAC | 1 cut(s) | 449 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 571, 575, 745, 749 |
| AgsI | TTSAA | 5 cut(s) | 32, 359, 662, 674, 836 |
| AjiI | CACGTC | 3 cut(s) | 158, 184, 337 |
| AjnI | CCWGG | 1 cut(s) | 330 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 489, 521 |
| AluBI | AGCT | 2 cut(s) | 22, 362 |
| AluI | AGCT | 2 cut(s) | 22, 362 |
| Alw26I | GTCTC | 1 cut(s) | 493 |
| AoxI | GGCC | 8 cut(s) | 8, 93, 222, 294, 627, 683, 801, 857 |
| ApaI | GGGCCC | 2 cut(s) | 631, 805 |
| ApeKI | GCWGC | 5 cut(s) | 19, 22, 380, 641, 815 |
| ApoI | RAATTY | 1 cut(s) | 868 |
| AspA2I | CCTAGG | 4 cut(s) | 569, 631, 743, 805 |
| AspLEI | GCGC | 2 cut(s) | 581, 755 |
| AspS9I | GGNCC | 5 cut(s) | 171, 627, 628, 801, 802 |
| AsuHPI | GGTGA | 4 cut(s) | 640, 647, 814, 821 |
| AvaII | GGWCC | 1 cut(s) | 171 |
| AvrII | CCTAGG | 4 cut(s) | 569, 631, 743, 805 |
| BaeGI | GKGCMC | 2 cut(s) | 631, 805 |
| BanII | GRGCYC | 2 cut(s) | 631, 805 |
| BbsI | GAAGAC | 1 cut(s) | 474 |
| BbvI | GCAGC | 5 cut(s) | 9, 31, 392, 628, 802 |
| BccI | CCATC | 6 cut(s) | 293, 416, 599, 621, 773, 795 |
| BciT130I | CCWGG | 1 cut(s) | 332 |
| BciVI | GTATCC | 1 cut(s) | 304 |
| BcoDI | GTCTC | 1 cut(s) | 493 |
| BfaI | CTAG | 6 cut(s) | 327, 539, 570, 632, 744, 806 |
| BfuI | GTATCC | 1 cut(s) | 304 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 92, 389 |
| BisI | GCNGC | 5 cut(s) | 20, 23, 381, 642, 816 |
| BlnI | CCTAGG | 4 cut(s) | 569, 631, 743, 805 |
| BlsI | GCNGC | 5 cut(s) | 21, 24, 382, 643, 817 |
| Bme1390I | CCNGG | 1 cut(s) | 332 |
| Bme18I | GGWCC | 1 cut(s) | 171 |
| BmgBI | CACGTC | 3 cut(s) | 158, 184, 337 |
| BmgT120I | GGNCC | 5 cut(s) | 171, 627, 628, 801, 802 |
| BmiI | GGNNCC | 6 cut(s) | 172, 173, 628, 629, 802, 803 |
| BmrFI | CCNGG | 1 cut(s) | 332 |
| BmsI | GCATC | 6 cut(s) | 34, 295, 586, 628, 760, 802 |
| BpiI | GAAGAC | 1 cut(s) | 474 |
| BpmI | CTGGAG | 1 cut(s) | 428 |
| Bpu10I | CCTNAGC | 3 cut(s) | 15, 680, 854 |
| BpuEI | CTTGAG | 2 cut(s) | 275, 341 |
| BsaHI | GRCGYC | 2 cut(s) | 609, 783 |
| BsaI | GGTCTC | 1 cut(s) | 493 |
| BsaJI | CCNNGG | 6 cut(s) | 569, 600, 631, 743, 774, 805 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 571, 575, 745, 749 |
| Bse118I | RCCGGY | 1 cut(s) | 6 |
| Bse1I | ACTGG | 2 cut(s) | 250, 445 |
| BseBI | CCWGG | 1 cut(s) | 332 |
| BseDI | CCNNGG | 6 cut(s) | 569, 600, 631, 743, 774, 805 |
| BseGI | GGATG | 4 cut(s) | 411, 439, 610, 784 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 571, 575, 745, 749 |
| BseMII | CTCAG | 3 cut(s) | 6, 694, 868 |
| BseNI | ACTGG | 2 cut(s) | 250, 445 |
| BseSI | GKGCMC | 2 cut(s) | 631, 805 |
| BseXI | GCAGC | 5 cut(s) | 9, 31, 392, 628, 802 |
| BshFI | GGCC | 8 cut(s) | 10, 95, 224, 296, 629, 685, 803, 859 |
| BsiSI | CCGG | 1 cut(s) | 7 |
| BslFI | GGGAC | 3 cut(s) | 184, 569, 743 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 571, 575, 745, 749 |
| BsmAI | GTCTC | 1 cut(s) | 493 |
| BsmFI | GGGAC | 3 cut(s) | 184, 569, 743 |
| BsnI | GGCC | 8 cut(s) | 10, 95, 224, 296, 629, 685, 803, 859 |
| Bso31I | GGTCTC | 1 cut(s) | 493 |
| Bsp120I | GGGCCC | 2 cut(s) | 627, 801 |
| Bsp1286I | GDGCHC | 2 cut(s) | 631, 805 |
| Bsp19I | CCATGG | 2 cut(s) | 600, 774 |
| BspACI | CCGC | 2 cut(s) | 128, 280 |
| BspANI | GGCC | 8 cut(s) | 10, 95, 224, 296, 629, 685, 803, 859 |
| BspCNI | CTCAG | 3 cut(s) | 7, 693, 867 |
| BspHI | TCATGA | 1 cut(s) | 271 |
| BspLI | GGNNCC | 6 cut(s) | 172, 173, 628, 629, 802, 803 |
| BspTNI | GGTCTC | 1 cut(s) | 493 |
| BsrFI | RCCGGY | 1 cut(s) | 6 |
| BsrI | ACTGG | 2 cut(s) | 250, 445 |
| BssAI | RCCGGY | 1 cut(s) | 6 |
| BssECI | CCNNGG | 6 cut(s) | 569, 600, 631, 743, 774, 805 |
| BssNI | GRCGYC | 2 cut(s) | 609, 783 |
| BssT1I | CCWWGG | 6 cut(s) | 569, 600, 631, 743, 774, 805 |
| Bst2UI | CCWGG | 1 cut(s) | 332 |
| Bst4CI | ACNGT | 1 cut(s) | 346 |
| Bst6I | CTCTTC | 1 cut(s) | 36 |
| BstACI | GRCGYC | 2 cut(s) | 609, 783 |
| BstC8I | GCNNGC | 2 cut(s) | 284, 527 |
| BstDEI | CTNAG | 4 cut(s) | 15, 385, 680, 854 |
| BstDSI | CCRYGG | 2 cut(s) | 600, 774 |
| BstF5I | GGATG | 4 cut(s) | 411, 439, 610, 784 |
| BstHHI | GCGC | 2 cut(s) | 581, 755 |
| BstMAI | GTCTC | 1 cut(s) | 493 |
| BstNI | CCWGG | 1 cut(s) | 332 |
| BstSCI | CCNGG | 1 cut(s) | 330 |
| BstSLI | GKGCMC | 2 cut(s) | 631, 805 |
| BstV1I | GCAGC | 5 cut(s) | 9, 31, 392, 628, 802 |
| BstV2I | GAAGAC | 1 cut(s) | 474 |
| BsuI | GTATCC | 1 cut(s) | 304 |
| BsuRI | GGCC | 8 cut(s) | 10, 95, 224, 296, 629, 685, 803, 859 |
| BtgI | CCRYGG | 2 cut(s) | 600, 774 |
| BtrI | CACGTC | 3 cut(s) | 158, 184, 337 |
| BtsCI | GGATG | 4 cut(s) | 411, 439, 610, 784 |
| BtsI | GCAGTG | 4 cut(s) | 149, 175, 546, 720 |
| BtsIMutI | CAGTG | 5 cut(s) | 110, 149, 175, 546, 720 |
| Cac8I | GCNNGC | 2 cut(s) | 284, 527 |
| CciI | TCATGA | 1 cut(s) | 271 |
| CfoI | GCGC | 2 cut(s) | 581, 755 |
| Cfr10I | RCCGGY | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 5 cut(s) | 171, 627, 628, 801, 802 |
| CseI | GACGC | 4 cut(s) | 124, 598, 772, 859 |
| Csp6I | GTAC | 1 cut(s) | 448 |
| CviAII | CATG | 7 cut(s) | 272, 593, 601, 617, 767, 775, 791 |
| CviQI | GTAC | 1 cut(s) | 448 |
| DdeI | CTNAG | 4 cut(s) | 15, 385, 680, 854 |
| EaeI | YGGCCR | 1 cut(s) | 8 |
| Eam1104I | CTCTTC | 1 cut(s) | 36 |
| EarI | CTCTTC | 1 cut(s) | 36 |
| EciI | GGCGGA | 1 cut(s) | 269 |
| Eco130I | CCWWGG | 6 cut(s) | 569, 600, 631, 743, 774, 805 |
| Eco147I | AGGCCT | 2 cut(s) | 685, 859 |
| Eco24I | GRGCYC | 2 cut(s) | 631, 805 |
| Eco31I | GGTCTC | 1 cut(s) | 493 |
| Eco32I | GATATC | 1 cut(s) | 277 |
| Eco47I | GGWCC | 1 cut(s) | 171 |
| EcoO109I | RGGNCCY | 5 cut(s) | 171, 627, 628, 801, 802 |
| EcoRII | CCWGG | 1 cut(s) | 330 |
| EcoRV | GATATC | 1 cut(s) | 277 |
| EcoT14I | CCWWGG | 6 cut(s) | 569, 600, 631, 743, 774, 805 |
| EcoT38I | GRGCYC | 2 cut(s) | 631, 805 |
| ErhI | CCWWGG | 6 cut(s) | 569, 600, 631, 743, 774, 805 |
| FaeI | CATG | 7 cut(s) | 275, 596, 604, 620, 770, 778, 794 |
| FaqI | GGGAC | 3 cut(s) | 184, 569, 743 |
| FatI | CATG | 7 cut(s) | 271, 592, 600, 616, 766, 774, 790 |
| FauNDI | CATATG | 1 cut(s) | 429 |
| Fnu4HI | GCNGC | 5 cut(s) | 20, 23, 381, 642, 816 |
| FokI | GGATG | 4 cut(s) | 398, 446, 617, 791 |
| FriOI | GRGCYC | 2 cut(s) | 631, 805 |
| Fsp4HI | GCNGC | 5 cut(s) | 20, 23, 381, 642, 816 |
| FspBI | CTAG | 6 cut(s) | 327, 539, 570, 632, 744, 806 |
| GlaI | GCGC | 2 cut(s) | 580, 754 |
| GluI | GCNGC | 5 cut(s) | 20, 23, 381, 642, 816 |
| GsuI | CTGGAG | 1 cut(s) | 428 |
| HaeIII | GGCC | 8 cut(s) | 10, 95, 224, 296, 629, 685, 803, 859 |
| HapII | CCGG | 1 cut(s) | 7 |
| HgaI | GACGC | 4 cut(s) | 124, 598, 772, 859 |
| HhaI | GCGC | 2 cut(s) | 581, 755 |
| Hin1I | GRCGYC | 2 cut(s) | 609, 783 |
| Hin1II | CATG | 7 cut(s) | 275, 596, 604, 620, 770, 778, 794 |
| Hin6I | GCGC | 2 cut(s) | 579, 753 |
| HinP1I | GCGC | 2 cut(s) | 579, 753 |
| HincII | GTYRAC | 1 cut(s) | 197 |
| HindII | GTYRAC | 1 cut(s) | 197 |
| HindIII | AAGCTT | 1 cut(s) | 360 |
| HinfI | GANTC | 4 cut(s) | 303, 316, 421, 437 |
| HpaII | CCGG | 1 cut(s) | 7 |
| HphI | GGTGA | 4 cut(s) | 640, 647, 814, 821 |
| Hpy166II | GTNNAC | 3 cut(s) | 197, 559, 733 |
| Hpy188I | TCNGA | 2 cut(s) | 253, 849 |
| Hpy188III | TCNNGA | 4 cut(s) | 29, 272, 320, 533 |
| Hpy8I | GTNNAC | 3 cut(s) | 197, 559, 733 |
| HpyAV | CCTTC | 3 cut(s) | 85, 471, 536 |
| HpyCH4III | ACNGT | 1 cut(s) | 346 |
| HpyCH4IV | ACGT | 4 cut(s) | 157, 183, 336, 513 |
| HpyCH4V | TGCA | 3 cut(s) | 25, 644, 818 |
| HpyF3I | CTNAG | 4 cut(s) | 15, 385, 680, 854 |
| HpySE526I | ACGT | 4 cut(s) | 157, 183, 336, 513 |
| Hsp92I | GRCGYC | 2 cut(s) | 609, 783 |
| Hsp92II | CATG | 7 cut(s) | 275, 596, 604, 620, 770, 778, 794 |
| HspAI | GCGC | 2 cut(s) | 579, 753 |
| KflI | GGGWCCC | 1 cut(s) | 171 |
| LmnI | GCTCC | 2 cut(s) | 235, 447 |
| Lsp1109I | GCAGC | 5 cut(s) | 9, 31, 392, 628, 802 |
| LweI | GCATC | 6 cut(s) | 34, 295, 586, 628, 760, 802 |
| MaeI | CTAG | 6 cut(s) | 327, 539, 570, 632, 744, 806 |
| MaeII | ACGT | 4 cut(s) | 157, 183, 336, 513 |
| MaeIII | GTNAC | 2 cut(s) | 206, 518 |
| MboII | GAAGA | 6 cut(s) | 53, 58, 61, 476, 479, 509 |
| MhlI | GDGCHC | 2 cut(s) | 631, 805 |
| MluCI | AATT | 3 cut(s) | 218, 694, 868 |
| MlyI | GAGTC | 1 cut(s) | 415 |
| MnlI | CCTC | 5 cut(s) | 382, 562, 723, 736, 903 |
| MslI | CAYNNNNRTG | 4 cut(s) | 416, 432, 621, 795 |
| MspA1I | CMGCKG | 1 cut(s) | 22 |
| MspI | CCGG | 1 cut(s) | 7 |
| MspR9I | CCNGG | 1 cut(s) | 332 |
| MvaI | CCWGG | 1 cut(s) | 332 |
| NcoI | CCATGG | 2 cut(s) | 600, 774 |
| NdeI | CATATG | 1 cut(s) | 429 |
| NlaIII | CATG | 7 cut(s) | 275, 596, 604, 620, 770, 778, 794 |
| NlaIV | GGNNCC | 6 cut(s) | 172, 173, 628, 629, 802, 803 |
| NmeAIII | GCCGAG | 1 cut(s) | 696 |
| NmuCI | GTSAC | 1 cut(s) | 518 |
| PagI | TCATGA | 1 cut(s) | 271 |
| PceI | AGGCCT | 2 cut(s) | 685, 859 |
| PfeI | GAWTC | 3 cut(s) | 303, 316, 437 |
| PkrI | GCNGC | 5 cut(s) | 21, 24, 382, 643, 817 |
| PleI | GAGTC | 1 cut(s) | 415 |
| PpsI | GAGTC | 1 cut(s) | 415 |
| PpuMI | RGGWCCY | 1 cut(s) | 171 |
| PsiI | TTATAA | 1 cut(s) | 707 |
| Psp5II | RGGWCCY | 1 cut(s) | 171 |
| Psp6I | CCWGG | 1 cut(s) | 330 |
| PspGI | CCWGG | 1 cut(s) | 330 |
| PspN4I | GGNNCC | 6 cut(s) | 172, 173, 628, 629, 802, 803 |
| PspOMI | GGGCCC | 2 cut(s) | 627, 801 |
| PspPI | GGNCC | 5 cut(s) | 171, 627, 628, 801, 802 |
| PspPPI | RGGWCCY | 1 cut(s) | 171 |
| PvuII | CAGCTG | 1 cut(s) | 22 |
| RsaI | GTAC | 1 cut(s) | 449 |
| RsaNI | GTAC | 1 cut(s) | 448 |
| RseI | CAYNNNNRTG | 4 cut(s) | 416, 432, 621, 795 |
| SatI | GCNGC | 5 cut(s) | 20, 23, 381, 642, 816 |
| Sau96I | GGNCC | 5 cut(s) | 171, 627, 628, 801, 802 |
| SchI | GAGTC | 1 cut(s) | 415 |
| ScrFI | CCNGG | 1 cut(s) | 332 |
| SduI | GDGCHC | 2 cut(s) | 631, 805 |
| SfaNI | GCATC | 6 cut(s) | 34, 295, 586, 628, 760, 802 |
| SinI | GGWCC | 1 cut(s) | 171 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 416, 432, 621, 795 |
| SmlI | CTYRAG | 2 cut(s) | 290, 320 |
| SmoI | CTYRAG | 2 cut(s) | 290, 320 |
| Sse9I | AATT | 3 cut(s) | 218, 694, 868 |
| SseBI | AGGCCT | 2 cut(s) | 685, 859 |
| SsiI | CCGC | 2 cut(s) | 128, 280 |
| SspMI | CTAG | 6 cut(s) | 327, 539, 570, 632, 744, 806 |
| StuI | AGGCCT | 2 cut(s) | 685, 859 |
| StyD4I | CCNGG | 1 cut(s) | 330 |
| StyI | CCWWGG | 6 cut(s) | 569, 600, 631, 743, 774, 805 |
| TaaI | ACNGT | 1 cut(s) | 346 |
| TaiI | ACGT | 4 cut(s) | 160, 186, 339, 516 |
| TaqI | TCGA | 1 cut(s) | 495 |
| TasI | AATT | 3 cut(s) | 218, 694, 868 |
| TfiI | GAWTC | 3 cut(s) | 303, 316, 437 |
| TscAI | CASTG | 5 cut(s) | 117, 156, 182, 553, 727 |
| TseFI | GTSAC | 1 cut(s) | 518 |
| TseI | GCWGC | 5 cut(s) | 19, 22, 380, 641, 815 |
| Tsp45I | GTSAC | 1 cut(s) | 518 |
| TspDTI | ATGAA | 5 cut(s) | 17, 260, 473, 477, 908 |
| TspGWI | ACGGA | 3 cut(s) | 506, 544, 718 |
| TspRI | CASTG | 5 cut(s) | 117, 156, 182, 553, 727 |
| VpaK11BI | GGWCC | 1 cut(s) | 171 |
| XapI | RAATTY | 1 cut(s) | 868 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 572, 620, 746, 794 |
| XmaJI | CCTAGG | 4 cut(s) | 569, 631, 743, 805 |
| XspI | CTAG | 6 cut(s) | 327, 539, 570, 632, 744, 806 |