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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 501 |
| AccB1I | GGYRCC | 2 cut(s) | 620, 1055 |
| AccBSI | CCGCTC | 1 cut(s) | 466 |
| AccII | CGCG | 1 cut(s) | 651 |
| AciI | CCGC | 6 cut(s) | 466, 535, 954, 957, 981, 991 |
| AcoI | YGGCCR | 1 cut(s) | 853 |
| AcsI | RAATTY | 2 cut(s) | 205, 1111 |
| AcyI | GRCGYC | 2 cut(s) | 621, 1056 |
| AfaI | GTAC | 2 cut(s) | 13, 125 |
| AfeI | AGCGCT | 1 cut(s) | 1129 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 452, 523, 1000 |
| AflII | CTTAAG | 1 cut(s) | 473 |
| AflIII | ACRYGT | 1 cut(s) | 571 |
| AgsI | TTSAA | 2 cut(s) | 850, 1122 |
| AluBI | AGCT | 4 cut(s) | 50, 151, 334, 356 |
| AluI | AGCT | 4 cut(s) | 50, 151, 334, 356 |
| Alw26I | GTCTC | 2 cut(s) | 268, 854 |
| Ama87I | CYCGRG | 1 cut(s) | 164 |
| Aor51HI | AGCGCT | 1 cut(s) | 1129 |
| AoxI | GGCC | 4 cut(s) | 725, 853, 933, 995 |
| ApeKI | GCWGC | 2 cut(s) | 977, 1004 |
| ApoI | RAATTY | 2 cut(s) | 205, 1111 |
| AspA2I | CCTAGG | 1 cut(s) | 998 |
| AspLEI | GCGC | 6 cut(s) | 459, 623, 653, 664, 1058, 1130 |
| AspS9I | GGNCC | 5 cut(s) | 139, 503, 725, 933, 1079 |
| AsuHPI | GGTGA | 1 cut(s) | 1109 |
| AvaI | CYCGRG | 1 cut(s) | 164 |
| AvaII | GGWCC | 3 cut(s) | 139, 503, 1079 |
| AvrII | CCTAGG | 1 cut(s) | 998 |
| AxyI | CCTNAGG | 1 cut(s) | 447 |
| BalI | TGGCCA | 1 cut(s) | 855 |
| BanI | GGYRCC | 2 cut(s) | 620, 1055 |
| BbsI | GAAGAC | 4 cut(s) | 248, 691, 816, 849 |
| BbvI | GCAGC | 2 cut(s) | 964, 991 |
| BccI | CCATC | 4 cut(s) | 86, 920, 974, 1087 |
| BceAI | ACGGC | 1 cut(s) | 944 |
| BclI | TGATCA | 1 cut(s) | 874 |
| BcoDI | GTCTC | 2 cut(s) | 268, 854 |
| BfaI | CTAG | 4 cut(s) | 321, 396, 672, 999 |
| BfmI | CTRYAG | 1 cut(s) | 433 |
| BfoI | RGCGCY | 4 cut(s) | 624, 665, 1059, 1131 |
| BfrI | CTTAAG | 1 cut(s) | 473 |
| BglII | AGATCT | 1 cut(s) | 384 |
| BisI | GCNGC | 4 cut(s) | 957, 978, 981, 1005 |
| BlnI | CCTAGG | 1 cut(s) | 998 |
| BlsI | GCNGC | 4 cut(s) | 958, 979, 982, 1006 |
| Bme18I | GGWCC | 3 cut(s) | 139, 503, 1079 |
| BmeT110I | CYCGRG | 1 cut(s) | 164 |
| BmgT120I | GGNCC | 5 cut(s) | 139, 503, 725, 933, 1079 |
| BmiI | GGNNCC | 8 cut(s) | 141, 343, 470, 557, 622, 677, 1057, 1081 |
| BmsI | GCATC | 3 cut(s) | 324, 681, 1054 |
| BpiI | GAAGAC | 4 cut(s) | 248, 691, 816, 849 |
| BsaAI | YACGTR | 1 cut(s) | 11 |
| BsaBI | GATNNNNATC | 2 cut(s) | 233, 873 |
| BsaHI | GRCGYC | 2 cut(s) | 621, 1056 |
| BsaJI | CCNNGG | 7 cut(s) | 402, 559, 627, 998, 1051, 1059, 1075 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 452, 523, 1000 |
| Bse118I | RCCGGY | 1 cut(s) | 993 |
| Bse1I | ACTGG | 1 cut(s) | 868 |
| Bse21I | CCTNAGG | 1 cut(s) | 447 |
| Bse8I | GATNNNNATC | 2 cut(s) | 233, 873 |
| BseDI | CCNNGG | 7 cut(s) | 402, 559, 627, 998, 1051, 1059, 1075 |
| BseGI | GGATG | 2 cut(s) | 1041, 1069 |
| BseJI | GATNNNNATC | 2 cut(s) | 233, 873 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 452, 523, 1000 |
| BseNI | ACTGG | 1 cut(s) | 868 |
| BseRI | GAGGAG | 1 cut(s) | 6 |
| BseXI | GCAGC | 2 cut(s) | 964, 991 |
| BseYI | CCCAGC | 1 cut(s) | 930 |
| Bsh1236I | CGCG | 1 cut(s) | 651 |
| BshFI | GGCC | 4 cut(s) | 727, 855, 935, 997 |
| BshNI | GGYRCC | 2 cut(s) | 620, 1055 |
| BsiHKCI | CYCGRG | 1 cut(s) | 164 |
| BsiSI | CCGG | 2 cut(s) | 606, 994 |
| BslFI | GGGAC | 3 cut(s) | 497, 627, 1065 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 452, 523, 1000 |
| BsmAI | GTCTC | 2 cut(s) | 268, 854 |
| BsmBI | CGTCTC | 1 cut(s) | 268 |
| BsmFI | GGGAC | 3 cut(s) | 497, 627, 1065 |
| BsmI | GAATGC | 1 cut(s) | 712 |
| BsnI | GGCC | 4 cut(s) | 727, 855, 935, 997 |
| BsoBI | CYCGRG | 1 cut(s) | 164 |
| Bsp143I | GATC | 5 cut(s) | 234, 384, 668, 823, 874 |
| Bsp19I | CCATGG | 4 cut(s) | 402, 1051, 1059, 1075 |
| BspACI | CCGC | 6 cut(s) | 466, 535, 954, 957, 981, 991 |
| BspANI | GGCC | 4 cut(s) | 727, 855, 935, 997 |
| BspFNI | CGCG | 1 cut(s) | 651 |
| BspHI | TCATGA | 2 cut(s) | 87, 328 |
| BspLI | GGNNCC | 8 cut(s) | 141, 343, 470, 557, 622, 677, 1057, 1081 |
| BspT107I | GGYRCC | 2 cut(s) | 620, 1055 |
| BspTI | CTTAAG | 1 cut(s) | 473 |
| BsrBI | CCGCTC | 1 cut(s) | 466 |
| BsrFI | RCCGGY | 1 cut(s) | 993 |
| BsrI | ACTGG | 1 cut(s) | 868 |
| BssAI | RCCGGY | 1 cut(s) | 993 |
| BssECI | CCNNGG | 7 cut(s) | 402, 559, 627, 998, 1051, 1059, 1075 |
| BssMI | GATC | 5 cut(s) | 234, 384, 668, 823, 874 |
| BssNI | GRCGYC | 2 cut(s) | 621, 1056 |
| BssT1I | CCWWGG | 6 cut(s) | 402, 627, 998, 1051, 1059, 1075 |
| Bst4CI | ACNGT | 1 cut(s) | 560 |
| BstACI | GRCGYC | 2 cut(s) | 621, 1056 |
| BstAFI | CTTAAG | 1 cut(s) | 473 |
| BstBAI | YACGTR | 1 cut(s) | 11 |
| BstC8I | GCNNGC | 2 cut(s) | 549, 995 |
| BstDEI | CTNAG | 6 cut(s) | 282, 411, 447, 833, 944, 1140 |
| BstDSI | CCRYGG | 5 cut(s) | 402, 559, 1051, 1059, 1075 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 450 |
| BstF5I | GGATG | 2 cut(s) | 1041, 1069 |
| BstFNI | CGCG | 1 cut(s) | 651 |
| BstH2I | RGCGCY | 4 cut(s) | 624, 665, 1059, 1131 |
| BstHHI | GCGC | 6 cut(s) | 459, 623, 653, 664, 1058, 1130 |
| BstKTI | GATC | 5 cut(s) | 237, 387, 671, 826, 877 |
| BstMAI | GTCTC | 2 cut(s) | 268, 854 |
| BstMBI | GATC | 5 cut(s) | 234, 384, 668, 823, 874 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 463, 659, 788, 962, 1064 |
| BstNSI | RCATGY | 2 cut(s) | 376, 737 |
| BstSFI | CTRYAG | 1 cut(s) | 433 |
| BstSNI | TACGTA | 1 cut(s) | 11 |
| BstUI | CGCG | 1 cut(s) | 651 |
| BstV1I | GCAGC | 2 cut(s) | 964, 991 |
| BstV2I | GAAGAC | 4 cut(s) | 248, 691, 816, 849 |
| BstX2I | RGATCY | 1 cut(s) | 384 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 863, 1052 |
| BstYI | RGATCY | 1 cut(s) | 384 |
| Bsu36I | CCTNAGG | 1 cut(s) | 447 |
| BsuRI | GGCC | 4 cut(s) | 727, 855, 935, 997 |
| BtgI | CCRYGG | 5 cut(s) | 402, 559, 1051, 1059, 1075 |
| BtsCI | GGATG | 2 cut(s) | 1041, 1069 |
| Cac8I | GCNNGC | 2 cut(s) | 549, 995 |
| CciI | TCATGA | 2 cut(s) | 87, 328 |
| CfoI | GCGC | 6 cut(s) | 459, 623, 653, 664, 1058, 1130 |
| Cfr10I | RCCGGY | 1 cut(s) | 993 |
| Cfr13I | GGNCC | 5 cut(s) | 139, 503, 725, 933, 1079 |
| CseI | GACGC | 1 cut(s) | 321 |
| Csp6I | GTAC | 2 cut(s) | 12, 124 |
| CviQI | GTAC | 2 cut(s) | 12, 124 |
| DdeI | CTNAG | 6 cut(s) | 282, 411, 447, 833, 944, 1140 |
| DinI | GGCGCC | 2 cut(s) | 622, 1057 |
| DpnI | GATC | 5 cut(s) | 236, 386, 670, 825, 876 |
| DpnII | GATC | 5 cut(s) | 234, 384, 668, 823, 874 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 501 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 501 |
| EaeI | YGGCCR | 1 cut(s) | 853 |
| Eco105I | TACGTA | 1 cut(s) | 11 |
| Eco130I | CCWWGG | 6 cut(s) | 402, 627, 998, 1051, 1059, 1075 |
| Eco47I | GGWCC | 3 cut(s) | 139, 503, 1079 |
| Eco47III | AGCGCT | 1 cut(s) | 1129 |
| Eco81I | CCTNAGG | 1 cut(s) | 447 |
| Eco88I | CYCGRG | 1 cut(s) | 164 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 450 |
| EcoO109I | RGGNCCY | 1 cut(s) | 139 |
| EcoT14I | CCWWGG | 6 cut(s) | 402, 627, 998, 1051, 1059, 1075 |
| EgeI | GGCGCC | 2 cut(s) | 622, 1057 |
| EheI | GGCGCC | 2 cut(s) | 622, 1057 |
| ErhI | CCWWGG | 6 cut(s) | 402, 627, 998, 1051, 1059, 1075 |
| Esp3I | CGTCTC | 1 cut(s) | 268 |
| FaqI | GGGAC | 3 cut(s) | 497, 627, 1065 |
| FbaI | TGATCA | 1 cut(s) | 874 |
| Fnu4HI | GCNGC | 4 cut(s) | 957, 978, 981, 1005 |
| FokI | GGATG | 2 cut(s) | 1028, 1076 |
| Fsp4HI | GCNGC | 4 cut(s) | 957, 978, 981, 1005 |
| FspBI | CTAG | 4 cut(s) | 321, 396, 672, 999 |
| GlaI | GCGC | 6 cut(s) | 458, 622, 652, 663, 1057, 1129 |
| GluI | GCNGC | 4 cut(s) | 957, 978, 981, 1005 |
| GsaI | CCCAGC | 1 cut(s) | 934 |
| HaeII | RGCGCY | 4 cut(s) | 624, 665, 1059, 1131 |
| HaeIII | GGCC | 4 cut(s) | 727, 855, 935, 997 |
| HapII | CCGG | 2 cut(s) | 606, 994 |
| HgaI | GACGC | 1 cut(s) | 321 |
| HhaI | GCGC | 6 cut(s) | 459, 623, 653, 664, 1058, 1130 |
| Hin1I | GRCGYC | 2 cut(s) | 621, 1056 |
| Hin6I | GCGC | 6 cut(s) | 457, 621, 651, 662, 1056, 1128 |
| HinP1I | GCGC | 6 cut(s) | 457, 621, 651, 662, 1056, 1128 |
| HincII | GTYRAC | 1 cut(s) | 569 |
| HindII | GTYRAC | 1 cut(s) | 569 |
| HinfI | GANTC | 4 cut(s) | 191, 244, 425, 1038 |
| HpaII | CCGG | 2 cut(s) | 606, 994 |
| HphI | GGTGA | 1 cut(s) | 1109 |
| Hpy166II | GTNNAC | 1 cut(s) | 569 |
| Hpy188I | TCNGA | 3 cut(s) | 204, 294, 718 |
| Hpy188III | TCNNGA | 8 cut(s) | 88, 188, 238, 329, 396, 422, 492, 776 |
| Hpy8I | GTNNAC | 1 cut(s) | 569 |
| Hpy99I | CGWCG | 1 cut(s) | 824 |
| HpyAV | CCTTC | 1 cut(s) | 521 |
| HpyCH4III | ACNGT | 1 cut(s) | 560 |
| HpyCH4IV | ACGT | 3 cut(s) | 10, 496, 571 |
| HpyCH4V | TGCA | 3 cut(s) | 269, 551, 755 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 463, 659, 788, 962, 1064 |
| HpyF3I | CTNAG | 6 cut(s) | 282, 411, 447, 833, 944, 1140 |
| HpySE526I | ACGT | 3 cut(s) | 10, 496, 571 |
| Hsp92I | GRCGYC | 2 cut(s) | 621, 1056 |
| HspAI | GCGC | 6 cut(s) | 457, 621, 651, 662, 1056, 1128 |
| KasI | GGCGCC | 2 cut(s) | 620, 1055 |
| KroI | GCCGGC | 1 cut(s) | 993 |
| KroNI | GCCGGC | 1 cut(s) | 995 |
| Ksp22I | TGATCA | 1 cut(s) | 874 |
| Kzo9I | GATC | 5 cut(s) | 234, 384, 668, 823, 874 |
| LmnI | GCTCC | 6 cut(s) | 117, 341, 463, 675, 709, 802 |
| Lsp1109I | GCAGC | 2 cut(s) | 964, 991 |
| LweI | GCATC | 3 cut(s) | 324, 681, 1054 |
| MaeI | CTAG | 4 cut(s) | 321, 396, 672, 999 |
| MaeII | ACGT | 3 cut(s) | 10, 496, 571 |
| MaeIII | GTNAC | 6 cut(s) | 188, 437, 736, 917, 949, 1105 |
| MalI | GATC | 5 cut(s) | 236, 386, 670, 825, 876 |
| MbiI | CCGCTC | 1 cut(s) | 466 |
| MboI | GATC | 5 cut(s) | 234, 384, 668, 823, 874 |
| MboII | GAAGA | 5 cut(s) | 253, 394, 691, 821, 854 |
| MflI | RGATCY | 1 cut(s) | 384 |
| MlsI | TGGCCA | 1 cut(s) | 855 |
| MluCI | AATT | 5 cut(s) | 205, 487, 793, 882, 1111 |
| MluNI | TGGCCA | 1 cut(s) | 855 |
| Mly113I | GGCGCC | 2 cut(s) | 621, 1056 |
| MlyI | GAGTC | 3 cut(s) | 185, 238, 434 |
| Mox20I | TGGCCA | 1 cut(s) | 855 |
| MroNI | GCCGGC | 1 cut(s) | 993 |
| MscI | TGGCCA | 1 cut(s) | 855 |
| MseI | TTAA | 1 cut(s) | 474 |
| MslI | CAYNNNNRTG | 6 cut(s) | 86, 102, 224, 377, 689, 1050 |
| Msp20I | TGGCCA | 1 cut(s) | 855 |
| MspCI | CTTAAG | 1 cut(s) | 473 |
| MspI | CCGG | 2 cut(s) | 606, 994 |
| Mva1269I | GAATGC | 1 cut(s) | 712 |
| MvnI | CGCG | 1 cut(s) | 651 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 463, 659, 788, 962, 1064 |
| NaeI | GCCGGC | 1 cut(s) | 995 |
| NarI | GGCGCC | 2 cut(s) | 621, 1056 |
| NcoI | CCATGG | 4 cut(s) | 402, 1051, 1059, 1075 |
| NdeII | GATC | 5 cut(s) | 234, 384, 668, 823, 874 |
| NgoMIV | GCCGGC | 1 cut(s) | 993 |
| NlaIV | GGNNCC | 8 cut(s) | 141, 343, 470, 557, 622, 677, 1057, 1081 |
| NmuCI | GTSAC | 5 cut(s) | 188, 437, 917, 949, 1105 |
| NspI | RCATGY | 2 cut(s) | 376, 737 |
| PaeR7I | CTCGAG | 1 cut(s) | 164 |
| PagI | TCATGA | 2 cut(s) | 87, 328 |
| PctI | GAATGC | 1 cut(s) | 712 |
| PdiI | GCCGGC | 1 cut(s) | 995 |
| PfeI | GAWTC | 1 cut(s) | 1038 |
| PkrI | GCNGC | 4 cut(s) | 958, 979, 982, 1006 |
| PleI | GAGTC | 3 cut(s) | 185, 238, 433 |
| PluTI | GGCGCC | 2 cut(s) | 624, 1059 |
| PpsI | GAGTC | 3 cut(s) | 185, 238, 433 |
| Ppu21I | YACGTR | 1 cut(s) | 11 |
| PpuMI | RGGWCCY | 1 cut(s) | 139 |
| Psp5II | RGGWCCY | 1 cut(s) | 139 |
| PspFI | CCCAGC | 1 cut(s) | 930 |
| PspN4I | GGNNCC | 8 cut(s) | 141, 343, 470, 557, 622, 677, 1057, 1081 |
| PspPI | GGNCC | 5 cut(s) | 139, 503, 725, 933, 1079 |
| PspPPI | RGGWCCY | 1 cut(s) | 139 |
| PspXI | VCTCGAGB | 1 cut(s) | 164 |
| PsuI | RGATCY | 1 cut(s) | 384 |
| RsaI | GTAC | 2 cut(s) | 13, 125 |
| RsaNI | GTAC | 2 cut(s) | 12, 124 |
| RseI | CAYNNNNRTG | 6 cut(s) | 86, 102, 224, 377, 689, 1050 |
| SaqAI | TTAA | 1 cut(s) | 474 |
| SatI | GCNGC | 4 cut(s) | 957, 978, 981, 1005 |
| Sau3AI | GATC | 5 cut(s) | 234, 384, 668, 823, 874 |
| Sau96I | GGNCC | 5 cut(s) | 139, 503, 725, 933, 1079 |
| SchI | GAGTC | 3 cut(s) | 185, 238, 434 |
| SfaNI | GCATC | 3 cut(s) | 324, 681, 1054 |
| SfcI | CTRYAG | 1 cut(s) | 433 |
| SfoI | GGCGCC | 2 cut(s) | 622, 1057 |
| Sfr274I | CTCGAG | 1 cut(s) | 164 |
| SinI | GGWCC | 3 cut(s) | 139, 503, 1079 |
| SlaI | CTCGAG | 1 cut(s) | 164 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 86, 102, 224, 377, 689, 1050 |
| SmlI | CTYRAG | 2 cut(s) | 164, 473 |
| SmoI | CTYRAG | 2 cut(s) | 164, 473 |
| SnaBI | TACGTA | 1 cut(s) | 11 |
| Sse9I | AATT | 5 cut(s) | 205, 487, 793, 882, 1111 |
| SsiI | CCGC | 6 cut(s) | 466, 535, 954, 957, 981, 991 |
| SspDI | GGCGCC | 2 cut(s) | 620, 1055 |
| SspMI | CTAG | 4 cut(s) | 321, 396, 672, 999 |
| StyI | CCWWGG | 6 cut(s) | 402, 627, 998, 1051, 1059, 1075 |
| TaaI | ACNGT | 1 cut(s) | 560 |
| TaiI | ACGT | 3 cut(s) | 13, 499, 574 |
| TaqI | TCGA | 4 cut(s) | 165, 237, 667, 702 |
| TasI | AATT | 5 cut(s) | 205, 487, 793, 882, 1111 |
| TauI | GCSGC | 2 cut(s) | 959, 983 |
| TfiI | GAWTC | 1 cut(s) | 1038 |
| Tru1I | TTAA | 1 cut(s) | 474 |
| Tru9I | TTAA | 1 cut(s) | 474 |
| TseFI | GTSAC | 5 cut(s) | 188, 437, 917, 949, 1105 |
| TseI | GCWGC | 2 cut(s) | 977, 1004 |
| Tsp45I | GTSAC | 5 cut(s) | 188, 437, 917, 949, 1105 |
| TspDTI | ATGAA | 2 cut(s) | 116, 317 |
| TspGWI | ACGGA | 1 cut(s) | 1050 |
| Vha464I | CTTAAG | 1 cut(s) | 473 |
| VpaK11BI | GGWCC | 3 cut(s) | 139, 503, 1079 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 450 |
| XapI | RAATTY | 2 cut(s) | 205, 1111 |
| XbaI | TCTAGA | 1 cut(s) | 395 |
| XceI | RCATGY | 2 cut(s) | 376, 737 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 150, 1090 |
| XhoI | CTCGAG | 1 cut(s) | 164 |
| XmaJI | CCTAGG | 1 cut(s) | 998 |
| XspI | CTAG | 4 cut(s) | 321, 396, 672, 999 |