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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 560 |
| AccII | CGCG | 1 cut(s) | 81 |
| AciI | CCGC | 2 cut(s) | 193, 475 |
| AcoI | YGGCCR | 1 cut(s) | 16 |
| AcsI | RAATTY | 2 cut(s) | 216, 542 |
| AcuI | CTGAAG | 1 cut(s) | 128 |
| AfaI | GTAC | 1 cut(s) | 362 |
| AgsI | TTSAA | 2 cut(s) | 89, 490 |
| AjnI | CCWGG | 2 cut(s) | 243, 706 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 402, 434, 632, 664 |
| AluBI | AGCT | 4 cut(s) | 92, 106, 275, 611 |
| AluI | AGCT | 4 cut(s) | 92, 106, 275, 611 |
| Alw26I | GTCTC | 2 cut(s) | 406, 696 |
| Ama87I | CYCGRG | 1 cut(s) | 233 |
| AoxI | GGCC | 4 cut(s) | 8, 16, 603, 626 |
| ApeKI | GCWGC | 1 cut(s) | 293 |
| ApoI | RAATTY | 2 cut(s) | 216, 542 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 519 |
| AspLEI | GCGC | 2 cut(s) | 81, 83 |
| AspS9I | GGNCC | 2 cut(s) | 604, 627 |
| AsuII | TTCGAA | 1 cut(s) | 638 |
| AvaI | CYCGRG | 1 cut(s) | 233 |
| BanI | GGYRCC | 1 cut(s) | 560 |
| BbsI | GAAGAC | 1 cut(s) | 387 |
| BbvI | GCAGC | 1 cut(s) | 305 |
| BccI | CCATC | 1 cut(s) | 456 |
| BciT130I | CCWGG | 2 cut(s) | 245, 708 |
| BciVI | GTATCC | 1 cut(s) | 217 |
| BclI | TGATCA | 2 cut(s) | 60, 669 |
| BcoDI | GTCTC | 2 cut(s) | 406, 696 |
| BfaI | CTAG | 2 cut(s) | 240, 452 |
| BfuI | GTATCC | 1 cut(s) | 217 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 302 |
| BisI | GCNGC | 1 cut(s) | 294 |
| BlsI | GCNGC | 1 cut(s) | 295 |
| Bme1390I | CCNGG | 2 cut(s) | 245, 708 |
| BmeT110I | CYCGRG | 1 cut(s) | 233 |
| BmgT120I | GGNCC | 2 cut(s) | 604, 627 |
| BmiI | GGNNCC | 2 cut(s) | 562, 606 |
| BmrFI | CCNGG | 2 cut(s) | 245, 708 |
| BmsI | GCATC | 2 cut(s) | 208, 606 |
| BpiI | GAAGAC | 1 cut(s) | 387 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 568, 600 |
| BpmI | CTGGAG | 1 cut(s) | 341 |
| Bpu14I | TTCGAA | 1 cut(s) | 638 |
| BpuEI | CTTGAG | 2 cut(s) | 188, 255 |
| BsaBI | GATNNNNATC | 1 cut(s) | 42 |
| BsaI | GGTCTC | 1 cut(s) | 406 |
| BsaJI | CCNNGG | 1 cut(s) | 600 |
| Bse1I | ACTGG | 3 cut(s) | 163, 358, 364 |
| Bse8I | GATNNNNATC | 1 cut(s) | 42 |
| BseBI | CCWGG | 2 cut(s) | 245, 708 |
| BseDI | CCNNGG | 1 cut(s) | 600 |
| BseGI | GGATG | 3 cut(s) | 120, 324, 352 |
| BseJI | GATNNNNATC | 1 cut(s) | 42 |
| BseNI | ACTGG | 3 cut(s) | 163, 358, 364 |
| BsePI | GCGCGC | 1 cut(s) | 79 |
| BseRI | GAGGAG | 1 cut(s) | 83 |
| BseXI | GCAGC | 1 cut(s) | 305 |
| BseYI | CCCAGC | 1 cut(s) | 607 |
| BsgI | GTGCAG | 1 cut(s) | 50 |
| Bsh1236I | CGCG | 1 cut(s) | 81 |
| BshFI | GGCC | 4 cut(s) | 10, 18, 605, 628 |
| BshNI | GGYRCC | 1 cut(s) | 560 |
| BsiHKCI | CYCGRG | 1 cut(s) | 233 |
| BsiSI | CCGG | 1 cut(s) | 15 |
| BsmAI | GTCTC | 2 cut(s) | 406, 696 |
| BsnI | GGCC | 4 cut(s) | 10, 18, 605, 628 |
| Bso31I | GGTCTC | 1 cut(s) | 406 |
| BsoBI | CYCGRG | 1 cut(s) | 233 |
| Bsp119I | TTCGAA | 1 cut(s) | 638 |
| Bsp143I | GATC | 3 cut(s) | 43, 60, 669 |
| Bsp19I | CCATGG | 1 cut(s) | 600 |
| BspACI | CCGC | 2 cut(s) | 193, 475 |
| BspANI | GGCC | 4 cut(s) | 10, 18, 605, 628 |
| BspFNI | CGCG | 1 cut(s) | 81 |
| BspHI | TCATGA | 1 cut(s) | 694 |
| BspLI | GGNNCC | 2 cut(s) | 562, 606 |
| BspT104I | TTCGAA | 1 cut(s) | 638 |
| BspT107I | GGYRCC | 1 cut(s) | 560 |
| BspTNI | GGTCTC | 1 cut(s) | 406 |
| BsrI | ACTGG | 3 cut(s) | 163, 358, 364 |
| BssECI | CCNNGG | 1 cut(s) | 600 |
| BssHII | GCGCGC | 1 cut(s) | 79 |
| BssMI | GATC | 3 cut(s) | 43, 60, 669 |
| BssT1I | CCWWGG | 1 cut(s) | 600 |
| Bst2UI | CCWGG | 2 cut(s) | 245, 708 |
| Bst4CI | ACNGT | 1 cut(s) | 28 |
| Bst6I | CTCTTC | 1 cut(s) | 104 |
| BstBI | TTCGAA | 1 cut(s) | 638 |
| BstC8I | GCNNGC | 2 cut(s) | 81, 197 |
| BstDEI | CTNAG | 2 cut(s) | 298, 612 |
| BstDSI | CCRYGG | 1 cut(s) | 600 |
| BstF5I | GGATG | 3 cut(s) | 120, 324, 352 |
| BstFNI | CGCG | 1 cut(s) | 81 |
| BstHHI | GCGC | 2 cut(s) | 81, 83 |
| BstKTI | GATC | 3 cut(s) | 46, 63, 672 |
| BstMAI | GTCTC | 2 cut(s) | 406, 696 |
| BstMBI | GATC | 3 cut(s) | 43, 60, 669 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 89, 281, 290, 302, 311, 625 |
| BstNI | CCWGG | 2 cut(s) | 245, 708 |
| BstNSI | RCATGY | 1 cut(s) | 253 |
| BstSCI | CCNGG | 2 cut(s) | 243, 706 |
| BstUI | CGCG | 1 cut(s) | 81 |
| BstV1I | GCAGC | 1 cut(s) | 305 |
| BstV2I | GAAGAC | 1 cut(s) | 387 |
| BsuI | GTATCC | 1 cut(s) | 217 |
| BsuRI | GGCC | 4 cut(s) | 10, 18, 605, 628 |
| BtgI | CCRYGG | 1 cut(s) | 600 |
| BtsCI | GGATG | 3 cut(s) | 120, 324, 352 |
| BtsIMutI | CAGTG | 1 cut(s) | 371 |
| Cac8I | GCNNGC | 2 cut(s) | 81, 197 |
| CciI | TCATGA | 1 cut(s) | 694 |
| CfoI | GCGC | 2 cut(s) | 81, 83 |
| Cfr13I | GGNCC | 2 cut(s) | 604, 627 |
| Csp6I | GTAC | 1 cut(s) | 361 |
| CviAII | CATG | 4 cut(s) | 250, 557, 601, 695 |
| CviQI | GTAC | 1 cut(s) | 361 |
| DdeI | CTNAG | 2 cut(s) | 298, 612 |
| DpnI | GATC | 3 cut(s) | 45, 62, 671 |
| DpnII | GATC | 3 cut(s) | 43, 60, 669 |
| EaeI | YGGCCR | 1 cut(s) | 16 |
| Eam1104I | CTCTTC | 1 cut(s) | 104 |
| EarI | CTCTTC | 1 cut(s) | 104 |
| EciI | GGCGGA | 1 cut(s) | 182 |
| Eco130I | CCWWGG | 1 cut(s) | 600 |
| Eco31I | GGTCTC | 1 cut(s) | 406 |
| Eco32I | GATATC | 1 cut(s) | 190 |
| Eco57I | CTGAAG | 1 cut(s) | 128 |
| Eco88I | CYCGRG | 1 cut(s) | 233 |
| EcoRI | GAATTC | 1 cut(s) | 542 |
| EcoRII | CCWGG | 2 cut(s) | 243, 706 |
| EcoRV | GATATC | 1 cut(s) | 190 |
| EcoT14I | CCWWGG | 1 cut(s) | 600 |
| ErhI | CCWWGG | 1 cut(s) | 600 |
| FaeI | CATG | 4 cut(s) | 253, 560, 604, 698 |
| FaiI | YATR | 8 cut(s) | 251, 342, 344, 371, 468, 558, 602, 696 |
| FatI | CATG | 4 cut(s) | 249, 556, 600, 694 |
| FauNDI | CATATG | 1 cut(s) | 342 |
| FbaI | TGATCA | 2 cut(s) | 60, 669 |
| Fnu4HI | GCNGC | 1 cut(s) | 294 |
| FokI | GGATG | 3 cut(s) | 127, 311, 359 |
| Fsp4HI | GCNGC | 1 cut(s) | 294 |
| FspBI | CTAG | 2 cut(s) | 240, 452 |
| GlaI | GCGC | 2 cut(s) | 80, 82 |
| GluI | GCNGC | 1 cut(s) | 294 |
| GsaI | CCCAGC | 1 cut(s) | 611 |
| GsuI | CTGGAG | 1 cut(s) | 341 |
| HaeIII | GGCC | 4 cut(s) | 10, 18, 605, 628 |
| HapII | CCGG | 1 cut(s) | 15 |
| HhaI | GCGC | 2 cut(s) | 81, 83 |
| Hin1II | CATG | 4 cut(s) | 253, 560, 604, 698 |
| Hin6I | GCGC | 2 cut(s) | 79, 81 |
| HinP1I | GCGC | 2 cut(s) | 79, 81 |
| HindIII | AAGCTT | 2 cut(s) | 90, 273 |
| HinfI | GANTC | 6 cut(s) | 229, 334, 350, 434, 679, 700 |
| HpaII | CCGG | 1 cut(s) | 15 |
| Hpy188I | TCNGA | 2 cut(s) | 166, 514 |
| Hpy188III | TCNNGA | 7 cut(s) | 47, 185, 233, 446, 500, 676, 695 |
| HpyAV | CCTTC | 3 cut(s) | 331, 384, 634 |
| HpyCH4III | ACNGT | 1 cut(s) | 28 |
| HpyCH4IV | ACGT | 1 cut(s) | 426 |
| HpyCH4V | TGCA | 1 cut(s) | 31 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 89, 281, 290, 302, 311, 625 |
| HpyF3I | CTNAG | 2 cut(s) | 298, 612 |
| HpySE526I | ACGT | 1 cut(s) | 426 |
| Hsp92II | CATG | 4 cut(s) | 253, 560, 604, 698 |
| HspAI | GCGC | 2 cut(s) | 79, 81 |
| Ksp22I | TGATCA | 2 cut(s) | 60, 669 |
| Kzo9I | GATC | 3 cut(s) | 43, 60, 669 |
| LmnI | GCTCC | 2 cut(s) | 148, 360 |
| Lsp1109I | GCAGC | 1 cut(s) | 305 |
| LweI | GCATC | 2 cut(s) | 208, 606 |
| MaeI | CTAG | 2 cut(s) | 240, 452 |
| MaeII | ACGT | 1 cut(s) | 426 |
| MaeIII | GTNAC | 3 cut(s) | 119, 431, 591 |
| MalI | GATC | 3 cut(s) | 45, 62, 671 |
| MboI | GATC | 3 cut(s) | 43, 60, 669 |
| MboII | GAAGA | 7 cut(s) | 16, 47, 121, 389, 392, 422, 695 |
| MluCI | AATT | 3 cut(s) | 131, 216, 542 |
| MlyI | GAGTC | 3 cut(s) | 328, 428, 673 |
| MnlI | CCTC | 6 cut(s) | 43, 61, 105, 295, 482, 618 |
| MroXI | GAANNNNTTC | 1 cut(s) | 519 |
| MseI | TTAA | 3 cut(s) | 210, 528, 536 |
| MslI | CAYNNNNRTG | 2 cut(s) | 329, 345 |
| MspI | CCGG | 1 cut(s) | 15 |
| MspR9I | CCNGG | 2 cut(s) | 245, 708 |
| MvaI | CCWGG | 2 cut(s) | 245, 708 |
| MvnI | CGCG | 1 cut(s) | 81 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 89, 281, 290, 302, 311, 625 |
| NcoI | CCATGG | 1 cut(s) | 600 |
| NdeI | CATATG | 1 cut(s) | 342 |
| NdeII | GATC | 3 cut(s) | 43, 60, 669 |
| NlaIII | CATG | 4 cut(s) | 253, 560, 604, 698 |
| NlaIV | GGNNCC | 2 cut(s) | 562, 606 |
| NmuCI | GTSAC | 1 cut(s) | 431 |
| NspI | RCATGY | 1 cut(s) | 253 |
| NspV | TTCGAA | 1 cut(s) | 638 |
| PaeR7I | CTCGAG | 1 cut(s) | 233 |
| PagI | TCATGA | 1 cut(s) | 694 |
| PauI | GCGCGC | 1 cut(s) | 79 |
| PdmI | GAANNNNTTC | 1 cut(s) | 519 |
| PfeI | GAWTC | 3 cut(s) | 229, 350, 700 |
| PkrI | GCNGC | 1 cut(s) | 295 |
| PleI | GAGTC | 3 cut(s) | 328, 428, 673 |
| PpsI | GAGTC | 3 cut(s) | 328, 428, 673 |
| Psp6I | CCWGG | 2 cut(s) | 243, 706 |
| PspFI | CCCAGC | 1 cut(s) | 607 |
| PspGI | CCWGG | 2 cut(s) | 243, 706 |
| PspN4I | GGNNCC | 2 cut(s) | 562, 606 |
| PspPI | GGNCC | 2 cut(s) | 604, 627 |
| PteI | GCGCGC | 1 cut(s) | 79 |
| RsaI | GTAC | 1 cut(s) | 362 |
| RsaNI | GTAC | 1 cut(s) | 361 |
| RseI | CAYNNNNRTG | 2 cut(s) | 329, 345 |
| SaqAI | TTAA | 3 cut(s) | 210, 528, 536 |
| SatI | GCNGC | 1 cut(s) | 294 |
| Sau3AI | GATC | 3 cut(s) | 43, 60, 669 |
| Sau96I | GGNCC | 2 cut(s) | 604, 627 |
| SchI | GAGTC | 3 cut(s) | 328, 428, 673 |
| ScrFI | CCNGG | 2 cut(s) | 245, 708 |
| SfaNI | GCATC | 2 cut(s) | 208, 606 |
| Sfr274I | CTCGAG | 1 cut(s) | 233 |
| SfuI | TTCGAA | 1 cut(s) | 638 |
| SlaI | CTCGAG | 1 cut(s) | 233 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 329, 345 |
| SmlI | CTYRAG | 3 cut(s) | 203, 233, 270 |
| SmoI | CTYRAG | 3 cut(s) | 203, 233, 270 |
| Sse9I | AATT | 3 cut(s) | 131, 216, 542 |
| SsiI | CCGC | 2 cut(s) | 193, 475 |
| SspI | AATATT | 1 cut(s) | 259 |
| SspMI | CTAG | 2 cut(s) | 240, 452 |
| StyD4I | CCNGG | 2 cut(s) | 243, 706 |
| StyI | CCWWGG | 1 cut(s) | 600 |
| TaaI | ACNGT | 1 cut(s) | 28 |
| TaiI | ACGT | 1 cut(s) | 429 |
| TaqI | TCGA | 4 cut(s) | 42, 234, 408, 638 |
| TasI | AATT | 3 cut(s) | 131, 216, 542 |
| TfiI | GAWTC | 3 cut(s) | 229, 350, 700 |
| Tru1I | TTAA | 3 cut(s) | 210, 528, 536 |
| Tru9I | TTAA | 3 cut(s) | 210, 528, 536 |
| TscAI | CASTG | 1 cut(s) | 371 |
| TseFI | GTSAC | 1 cut(s) | 431 |
| TseI | GCWGC | 1 cut(s) | 293 |
| Tsp45I | GTSAC | 1 cut(s) | 431 |
| TspDTI | ATGAA | 5 cut(s) | 17, 85, 313, 386, 390 |
| TspRI | CASTG | 1 cut(s) | 371 |
| XapI | RAATTY | 2 cut(s) | 216, 542 |
| XceI | RCATGY | 1 cut(s) | 253 |
| XhoI | CTCGAG | 1 cut(s) | 233 |
| XmnI | GAANNNNTTC | 1 cut(s) | 519 |
| XspI | CTAG | 2 cut(s) | 240, 452 |